Wall clock time and date at job start Tue Mar 31 2020 14:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.62444 * 2 1 4 4 C 1.53241 * 109.63016 * 239.61634 * 2 1 3 5 5 N 1.46900 * 109.34038 * 186.26465 * 4 2 1 6 6 C 1.46896 * 111.00087 * 187.25510 * 5 4 2 7 7 C 1.50693 * 109.47224 * 169.99901 * 6 5 4 8 8 C 1.35351 * 126.37983 * 94.97423 * 7 6 5 9 9 C 1.41543 * 105.50473 * 180.02562 * 8 7 6 10 10 C 1.47585 * 126.52804 * 180.02562 * 9 8 7 11 11 O 1.21497 * 119.99660 * 359.97251 * 10 9 8 12 12 O 1.34722 * 120.00188 * 179.97438 * 10 9 8 13 13 N 1.31860 * 106.95276 * 359.97438 * 9 8 7 14 14 N 1.28471 * 110.06255 * 0.02562 * 13 9 8 15 15 C 1.46491 * 124.88241 * 179.97438 * 14 13 9 16 16 C 1.46897 * 111.26770 * 63.10084 * 5 4 2 17 17 C 1.53239 * 109.34320 * 296.89677 * 16 5 4 18 18 H 1.08994 * 109.62780 * 173.53713 * 17 16 5 19 19 C 1.53002 * 109.78919 * 294.02448 * 17 16 5 20 20 N 1.47078 * 108.52096 * 53.83042 * 17 16 5 21 21 C 1.36941 * 120.88162 * 128.79269 * 20 17 16 22 22 H 1.08005 * 119.99732 * 206.54544 * 21 20 17 23 23 C 1.38805 * 119.99834 * 26.54321 * 21 20 17 24 24 N 1.31619 * 120.00281 * 17.65704 * 23 21 20 25 25 Si 1.86803 * 119.99812 * 197.65798 * 23 21 20 26 26 H 1.48497 * 109.47133 * 94.11517 * 25 23 21 27 27 H 1.48499 * 109.47024 * 214.11201 * 25 23 21 28 28 H 1.48497 * 109.47089 * 334.11458 * 25 23 21 29 29 H 1.09000 * 109.46988 * 180.38484 * 1 2 3 30 30 H 1.08997 * 109.47421 * 300.38551 * 1 2 3 31 31 H 1.09000 * 109.46989 * 60.38579 * 1 2 3 32 32 H 1.09000 * 109.49251 * 66.30626 * 4 2 1 33 33 H 1.08996 * 109.51168 * 306.23845 * 4 2 1 34 34 H 1.09007 * 109.46967 * 49.99720 * 6 5 4 35 35 H 1.09007 * 109.47044 * 290.00038 * 6 5 4 36 36 H 1.07997 * 127.24753 * 359.97438 * 8 7 6 37 37 H 0.96705 * 116.99695 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.47781 * 90.02052 * 15 14 13 39 39 H 1.08999 * 109.47067 * 210.02253 * 15 14 13 40 40 H 1.08999 * 109.46881 * 330.02026 * 15 14 13 41 41 H 1.09002 * 109.49016 * 56.86157 * 16 5 4 42 42 H 1.09004 * 109.49169 * 176.93703 * 16 5 4 43 43 H 1.08995 * 109.46854 * 179.12417 * 19 17 16 44 44 H 1.08996 * 109.46836 * 299.12562 * 19 17 16 45 45 H 1.08998 * 109.46591 * 59.12820 * 19 17 16 46 46 H 0.97006 * 120.00073 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7300 -1.2451 5 7 3.5060 -0.8582 -1.1646 6 6 4.0568 -1.3975 -2.4150 7 6 5.5595 -1.2863 -2.3911 8 6 6.4299 -2.2505 -2.0108 9 6 7.7163 -1.6789 -2.1594 10 6 9.0071 -2.3340 -1.8718 11 8 9.0301 -3.4781 -1.4635 12 8 10.1600 -1.6633 -2.0619 13 7 7.5419 -0.4502 -2.6049 14 7 6.2885 -0.2059 -2.7451 15 6 5.7301 1.0623 -3.2203 16 6 3.9062 -1.6804 -0.0150 17 6 3.4677 -0.9893 1.2805 18 1 3.6588 -1.6465 2.1288 19 6 4.2427 0.3179 1.4582 20 7 2.0279 -0.7021 1.1926 21 6 1.1736 -1.0789 2.1943 22 1 0.1329 -1.2663 1.9745 23 6 1.6452 -1.2199 3.4922 24 7 2.7912 -0.6733 3.8391 25 14 0.6533 -2.1854 4.7465 26 1 1.1299 -3.5914 4.7783 27 1 0.8242 -1.5744 6.0892 28 1 -0.7827 -2.1580 4.3693 29 1 -0.3633 -1.0277 0.0069 30 1 -0.3634 0.5198 0.8865 31 1 -0.3633 0.5078 -0.8934 32 1 1.7781 -0.1618 -2.1362 33 1 1.5951 -1.7215 -1.2978 34 1 3.6639 -0.8311 -3.2593 35 1 3.7716 -2.4448 -2.5158 36 1 6.1929 -3.2460 -1.6656 37 1 10.9802 -2.1339 -1.8593 38 1 5.6323 1.0324 -4.3055 39 1 4.7492 1.2183 -2.7713 40 1 6.3933 1.8798 -2.9377 41 1 3.4306 -2.6587 -0.0844 42 1 4.9895 -1.8014 -0.0140 43 1 3.9158 0.8126 2.3728 44 1 5.3091 0.1021 1.5231 45 1 4.0551 0.9702 0.6054 46 1 3.1205 -0.7715 4.7462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589399046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:15 Heat of formation + Delta-G solvation = 6.503577 kcal Electronic energy + Delta-G solvation = -28692.049670 eV Core-core repulsion = 24811.822754 eV Total energy + Delta-G solvation = -3880.226915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.78987 -40.92731 -40.06902 -37.13162 -36.62989 -34.49292 -34.29309 -33.37903 -32.09653 -29.64411 -28.75348 -27.62208 -27.51946 -25.80605 -25.01231 -23.61257 -22.42915 -22.17425 -20.99219 -20.30636 -18.83072 -18.13850 -17.92240 -17.56049 -17.16382 -17.05078 -16.46257 -16.03706 -15.85853 -15.65239 -15.60141 -14.95947 -14.91762 -14.51601 -14.42719 -13.91869 -13.61733 -13.51744 -13.37318 -13.32315 -13.02562 -12.85628 -12.79819 -12.63756 -12.58871 -12.25752 -12.22200 -12.17663 -12.02328 -11.92424 -11.78586 -11.60720 -11.22488 -11.01071 -10.44314 -10.21480 -10.05783 -9.23789 -8.52056 -7.75983 -5.17401 0.23549 0.94994 1.45400 1.47004 1.50121 1.56635 2.05172 2.15253 2.56053 3.08457 3.38063 3.39921 3.57890 3.65522 4.09848 4.27927 4.31930 4.36339 4.38345 4.44594 4.54829 4.57269 4.65004 4.67769 4.70109 4.76952 4.82332 4.88090 4.93857 4.94843 4.99166 5.10052 5.24362 5.25607 5.32678 5.45351 5.50404 5.60409 5.71935 5.76496 5.78739 5.99763 6.17468 6.27343 6.50471 6.74598 7.01586 7.27218 7.99751 8.51216 9.28890 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.003803 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.443180 B = 7360.292302 C = 8437.424746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.163 3.837 3 H 0.021 0.979 4 C 0.059 3.941 5 N -0.528 5.528 6 C 0.121 3.879 7 C 0.040 3.960 8 C -0.187 4.187 9 C -0.039 4.039 10 C 0.581 3.419 11 O -0.538 6.538 12 O -0.498 6.498 13 N -0.246 5.246 14 N -0.255 5.255 15 C 0.074 3.926 16 C 0.058 3.942 17 C 0.198 3.802 18 H 0.049 0.951 19 C -0.111 4.111 20 N -0.600 5.600 21 C -0.246 4.246 22 H 0.074 0.926 23 C -0.050 4.050 24 N -0.924 5.924 25 Si 0.951 3.049 26 H -0.295 1.295 27 H -0.301 1.301 28 H -0.269 1.269 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.028 0.972 34 H 0.122 0.878 35 H 0.066 0.934 36 H 0.159 0.841 37 H 0.434 0.566 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.017 0.983 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.018 0.982 45 H 0.042 0.958 46 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.165 2.284 -18.835 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.058 3.942 3 H 0.039 0.961 4 C -0.070 4.070 5 N -0.253 5.253 6 C -0.007 4.007 7 C -0.085 4.085 8 C -0.215 4.215 9 C -0.194 4.194 10 C 0.424 3.576 11 O -0.427 6.427 12 O -0.311 6.311 13 N -0.085 5.085 14 N -0.045 5.045 15 C -0.065 4.065 16 C -0.072 4.072 17 C 0.092 3.908 18 H 0.067 0.933 19 C -0.170 4.170 20 N -0.324 5.324 21 C -0.377 4.377 22 H 0.092 0.908 23 C -0.245 4.245 24 N -0.571 5.571 25 Si 0.781 3.219 26 H -0.222 1.222 27 H -0.229 1.229 28 H -0.194 1.194 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.046 0.954 34 H 0.140 0.860 35 H 0.084 0.916 36 H 0.177 0.823 37 H 0.297 0.703 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.036 0.964 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.061 0.939 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.589 3.727 -18.964 20.119 hybrid contribution -0.226 -2.375 1.860 3.025 sum 5.363 1.352 -17.103 17.976 Atomic orbital electron populations 1.21712 0.94606 1.01177 1.01235 1.20696 0.93536 0.93619 0.86392 0.96112 1.22589 0.85727 0.99429 0.99264 1.61878 1.11408 1.50345 1.01675 1.20686 0.85095 1.01030 0.93895 1.21385 0.96047 0.87372 1.03707 1.21610 0.89867 1.02067 1.07948 1.20693 0.92553 0.93324 1.12839 1.19266 0.83350 0.82431 0.72575 1.90900 1.88100 1.19218 1.44480 1.84601 1.17213 1.48960 1.80302 1.73614 1.00816 1.16580 1.17533 1.45780 1.02087 1.13257 1.43359 1.22646 1.01300 0.79943 1.02580 1.22507 0.98939 0.93730 0.91984 1.20188 0.83057 0.94526 0.93078 0.93314 1.21671 0.96334 0.99262 0.99733 1.44525 1.03336 1.65774 1.18757 1.19487 0.93451 1.37674 0.87065 0.90820 1.25601 0.98781 1.01693 0.98458 1.70184 1.22930 1.46399 1.17607 0.85487 0.79085 0.78396 0.78893 1.22229 1.22878 1.19363 0.93495 0.94288 0.90132 0.87632 0.95414 0.86041 0.91561 0.82314 0.70332 0.86734 0.86765 0.87942 0.96433 0.91836 0.94515 0.96249 0.93888 0.94828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 7.94 71.98 0.57 -3.62 16 2 C 0.16 5.95 3.25 44.96 0.15 6.10 16 3 H 0.02 0.82 7.63 -2.38 -0.02 0.80 16 4 C 0.06 1.62 4.91 86.38 0.42 2.05 16 5 N -0.53 -14.98 4.12 -899.82 -3.71 -18.69 16 6 C 0.12 2.53 4.85 85.56 0.41 2.95 16 7 C 0.04 0.97 5.66 41.39 0.23 1.21 16 8 C -0.19 -5.29 9.52 22.42 0.21 -5.08 16 9 C -0.04 -1.16 7.17 42.42 0.30 -0.86 16 10 C 0.58 16.47 8.34 70.29 0.59 17.06 16 11 O -0.54 -17.69 17.71 19.85 0.35 -17.33 16 12 O -0.50 -10.57 13.44 -56.32 -0.76 -11.33 16 13 N -0.25 -6.84 11.99 -48.22 -0.58 -7.42 16 14 N -0.25 -5.87 3.70 -355.95 -1.32 -7.18 16 15 C 0.07 0.99 10.97 127.77 1.40 2.39 16 16 C 0.06 2.14 4.85 86.38 0.42 2.56 16 17 C 0.20 9.19 2.34 44.96 0.11 9.29 16 18 H 0.05 2.70 6.14 -2.39 -0.01 2.69 16 19 C -0.11 -5.08 8.97 71.98 0.65 -4.43 16 20 N -0.60 -28.01 2.73 -650.65 -1.78 -29.78 16 21 C -0.25 -12.84 8.73 84.03 0.73 -12.10 16 22 H 0.07 3.72 6.18 -2.91 -0.02 3.71 16 23 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 24 N -0.92 -53.59 9.80 21.65 0.21 -53.38 16 25 Si 0.95 44.83 29.59 68.60 2.03 46.86 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 H 0.05 1.56 7.55 -2.39 -0.02 1.54 16 30 H 0.04 1.43 7.58 -2.39 -0.02 1.41 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.11 2.06 7.99 -2.39 -0.02 2.04 16 33 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.12 1.66 7.72 -2.38 -0.02 1.64 16 35 H 0.07 1.36 8.13 -2.38 -0.02 1.34 16 36 H 0.16 4.45 8.06 -2.91 -0.02 4.42 16 37 H 0.43 4.40 9.11 -74.05 -0.67 3.73 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 1.44 7.66 -2.39 -0.02 1.42 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.06 2.36 6.16 -2.39 -0.01 2.35 16 43 H 0.04 1.93 6.87 -2.39 -0.02 1.92 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.04 1.81 7.10 -2.39 -0.02 1.79 16 46 H 0.24 13.95 8.31 -92.70 -0.77 13.18 16 Total: -1.00 -72.60 367.86 1.40 -71.20 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.33 Total: 11.85 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.62 Total: 15.20 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -7.17 Total: -116.45 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.41 Total: -28.67 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -72.60 1.40 -71.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589399046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.701 kcal (2) G-P(sol) polarization free energy of solvation -72.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds