Wall clock time and date at job start Tue Mar 31 2020 14:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.78207 * 2 1 4 4 C 1.53239 * 109.62819 * 239.51725 * 2 1 3 5 5 N 1.46900 * 109.33825 * 186.46081 * 4 2 1 6 6 C 1.46899 * 110.99741 * 187.24996 * 5 4 2 7 7 C 1.50707 * 109.47007 * 189.99819 * 6 5 4 8 8 C 1.35346 * 126.37673 * 94.68722 * 7 6 5 9 9 C 1.41545 * 105.49691 * 179.97438 * 8 7 6 10 10 C 1.47587 * 126.51931 * 180.13334 * 9 8 7 11 11 O 1.21487 * 120.00464 * 0.22827 * 10 9 8 12 12 O 1.34728 * 119.99890 * 180.23253 * 10 9 8 13 13 N 1.31853 * 106.95526 * 0.34771 * 9 8 7 14 14 N 1.28467 * 110.06074 * 359.77967 * 13 9 8 15 15 C 1.46503 * 124.87597 * 179.97438 * 14 13 9 16 16 C 1.46898 * 111.26914 * 63.10279 * 5 4 2 17 17 C 1.53238 * 109.33991 * 296.89502 * 16 5 4 18 18 H 1.09000 * 109.78843 * 294.02310 * 17 16 5 19 19 C 1.53002 * 109.62944 * 173.54035 * 17 16 5 20 20 N 1.47076 * 108.52059 * 53.83213 * 17 16 5 21 21 C 1.36943 * 120.88268 * 128.84041 * 20 17 16 22 22 H 1.08001 * 119.99236 * 306.46363 * 21 20 17 23 23 C 1.38810 * 120.00072 * 126.46755 * 21 20 17 24 24 N 1.31612 * 120.00001 * 338.08008 * 23 21 20 25 25 Si 1.86805 * 119.99723 * 158.07712 * 23 21 20 26 26 H 1.48501 * 109.46698 * 89.99988 * 25 23 21 27 27 H 1.48502 * 109.47029 * 209.99781 * 25 23 21 28 28 H 1.48495 * 109.47026 * 330.00174 * 25 23 21 29 29 H 1.08997 * 109.47363 * 307.36859 * 1 2 3 30 30 H 1.08997 * 109.47095 * 67.37393 * 1 2 3 31 31 H 1.08996 * 109.46880 * 187.36803 * 1 2 3 32 32 H 1.09003 * 109.49384 * 306.41809 * 4 2 1 33 33 H 1.09000 * 109.49382 * 66.46796 * 4 2 1 34 34 H 1.08999 * 109.47541 * 309.99709 * 6 5 4 35 35 H 1.08998 * 109.47028 * 70.00404 * 6 5 4 36 36 H 1.07994 * 127.25147 * 0.02562 * 8 7 6 37 37 H 0.96696 * 117.00362 * 179.97438 * 12 10 9 38 38 H 1.09007 * 109.46992 * 270.00493 * 15 14 13 39 39 H 1.09000 * 109.47052 * 30.00525 * 15 14 13 40 40 H 1.08998 * 109.46992 * 150.00817 * 15 14 13 41 41 H 1.09003 * 109.49306 * 176.93402 * 16 5 4 42 42 H 1.08998 * 109.49245 * 56.85364 * 16 5 4 43 43 H 1.09005 * 109.46907 * 300.97117 * 19 17 16 44 44 H 1.09001 * 109.46966 * 180.96964 * 19 17 16 45 45 H 1.09000 * 109.46835 * 60.96957 * 19 17 16 46 46 H 0.97006 * 119.99597 * 185.06108 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7322 -1.2438 5 7 3.5055 -0.8643 -1.1609 6 6 4.0568 -1.4061 -2.4100 7 6 5.5084 -1.7571 -2.2079 8 6 6.0016 -2.9732 -1.8762 9 6 7.4051 -2.8050 -1.8030 10 6 8.3985 -3.8461 -1.4757 11 8 8.0342 -4.9808 -1.2399 12 8 9.7096 -3.5382 -1.4383 13 7 7.6556 -1.5401 -2.0784 14 7 6.5587 -0.9154 -2.3169 15 6 6.4613 0.5061 -2.6577 16 6 3.9016 -1.6870 -0.0102 17 6 3.4629 -0.9940 1.2842 18 1 4.0174 -0.0642 1.4112 19 6 3.7267 -1.9164 2.4761 20 7 2.0241 -0.7028 1.1938 21 6 1.1672 -1.0757 2.1948 22 1 1.1429 -2.1020 2.5302 23 6 0.3300 -0.1347 2.7782 24 7 0.6286 1.1452 2.7079 25 14 -1.2205 -0.6850 3.6629 26 1 -0.9120 -0.9330 5.0942 27 1 -2.2544 0.3756 3.5558 28 1 -1.7274 -1.9351 3.0420 29 1 -0.3634 0.6237 0.8167 30 1 -0.3633 0.3953 -0.9485 31 1 -0.3633 -1.0192 0.1318 32 1 1.5924 -1.7225 -1.2962 33 1 1.7806 -0.1640 -2.1358 34 1 3.5028 -2.3009 -2.6938 35 1 3.9702 -0.6594 -3.1994 36 1 5.4421 -3.8808 -1.7044 37 1 10.3225 -4.2533 -1.2189 38 1 6.3532 1.0920 -1.7448 39 1 7.3642 0.8164 -3.1838 40 1 5.5941 0.6677 -3.2979 41 1 4.9846 -1.8111 -0.0073 42 1 3.4233 -2.6640 -0.0797 43 1 3.1766 -2.8480 2.3432 44 1 3.3980 -1.4279 3.3933 45 1 4.7935 -2.1305 2.5406 46 1 0.0842 1.7966 3.1773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589399052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:19 Heat of formation + Delta-G solvation = 29.741655 kcal Electronic energy + Delta-G solvation = -28601.095268 eV Core-core repulsion = 24721.876031 eV Total energy + Delta-G solvation = -3879.219237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.88374 -39.93411 -38.50375 -36.17168 -35.24733 -33.62372 -32.73379 -32.05297 -30.59999 -27.94501 -27.75664 -26.58817 -25.77435 -24.45110 -24.04364 -21.81952 -21.18849 -20.43522 -19.93466 -19.08946 -17.85865 -17.00880 -16.69927 -16.25663 -16.21814 -15.51191 -15.12472 -14.68402 -14.60483 -14.37878 -14.16971 -13.82781 -13.48438 -13.44329 -12.96666 -12.79489 -12.69420 -12.48737 -12.05936 -11.81943 -11.67809 -11.56498 -11.38144 -11.09558 -10.97812 -10.91715 -10.87482 -10.63423 -10.48573 -10.40968 -10.15750 -9.86072 -9.78265 -9.49623 -9.28107 -9.02930 -8.18748 -7.93181 -6.30091 -5.75599 -3.49903 1.24855 1.91983 2.27189 2.98401 3.09831 3.30265 3.39193 3.42816 4.26233 4.31832 4.42574 4.49265 4.95049 4.99539 5.05344 5.23234 5.29834 5.31719 5.41123 5.49868 5.55534 5.74023 5.85998 5.90201 6.03801 6.17308 6.23142 6.25619 6.29120 6.30392 6.46048 6.48831 6.60094 6.61603 6.67335 6.77724 6.91630 7.17387 7.20135 7.41373 7.49184 7.57846 7.64772 7.68119 7.89578 7.92789 8.64221 9.22188 9.75632 10.55786 11.17893 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.003441 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.596846 B = 8135.789033 C = 8845.066406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.200 3.800 3 H 0.035 0.965 4 C 0.043 3.957 5 N -0.529 5.529 6 C 0.117 3.883 7 C 0.033 3.967 8 C -0.169 4.169 9 C -0.015 4.015 10 C 0.578 3.422 11 O -0.509 6.509 12 O -0.504 6.504 13 N -0.235 5.235 14 N -0.261 5.261 15 C 0.087 3.913 16 C 0.046 3.954 17 C 0.174 3.826 18 H 0.028 0.972 19 C -0.129 4.129 20 N -0.578 5.578 21 C -0.268 4.268 22 H 0.050 0.950 23 C 0.041 3.959 24 N -0.875 5.875 25 Si 0.880 3.120 26 H -0.284 1.284 27 H -0.288 1.288 28 H -0.274 1.274 29 H 0.084 0.916 30 H 0.023 0.977 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.413 0.587 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.030 0.970 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.033 0.967 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.017 -2.942 -12.287 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.093 3.907 3 H 0.053 0.947 4 C -0.086 4.086 5 N -0.254 5.254 6 C -0.012 4.012 7 C -0.091 4.091 8 C -0.198 4.198 9 C -0.171 4.171 10 C 0.419 3.581 11 O -0.395 6.395 12 O -0.314 6.314 13 N -0.073 5.073 14 N -0.050 5.050 15 C -0.053 4.053 16 C -0.083 4.083 17 C 0.068 3.932 18 H 0.046 0.954 19 C -0.187 4.187 20 N -0.303 5.303 21 C -0.398 4.398 22 H 0.068 0.932 23 C -0.162 4.162 24 N -0.514 5.514 25 Si 0.708 3.292 26 H -0.210 1.210 27 H -0.213 1.213 28 H -0.199 1.199 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.180 0.820 37 H 0.271 0.729 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.052 0.948 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.582 -1.414 -12.362 16.999 hybrid contribution -1.363 -1.920 0.622 2.435 sum 10.220 -3.333 -11.740 15.918 Atomic orbital electron populations 1.21919 0.95765 1.02143 0.99987 1.20275 0.92686 0.93829 0.83883 0.94727 1.22903 0.85278 0.99740 1.00666 1.62145 1.12177 1.49964 1.01115 1.20682 0.86273 0.99562 0.94677 1.21298 0.91991 0.89888 1.05905 1.21464 0.91944 0.98701 1.07649 1.20476 0.92379 0.90998 1.13244 1.19262 0.80716 0.85479 0.72603 1.90919 1.81032 1.21327 1.46218 1.84650 1.17645 1.46347 1.82752 1.73663 1.11248 1.06149 1.16237 1.45418 1.02701 1.10276 1.46636 1.22243 1.04769 0.74695 1.03558 1.22799 0.98961 0.94623 0.91914 1.20507 0.87377 0.94850 0.90455 0.95446 1.21685 0.97943 0.99597 0.99522 1.44030 1.00587 1.68239 1.17402 1.18581 1.15274 0.92070 1.13860 0.93224 1.25544 0.99541 0.95366 0.95719 1.70077 1.38088 1.00772 1.42449 0.86694 0.84144 0.78398 0.79934 1.21017 1.21338 1.19939 0.89754 0.95794 0.93257 0.95111 0.92139 0.92376 0.89826 0.81986 0.72916 0.88749 0.88758 0.88303 0.91920 0.95193 0.93275 0.91536 0.94791 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 7.98 37.16 0.30 -2.72 16 2 C 0.20 4.34 3.21 -67.49 -0.22 4.12 16 3 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.04 0.75 4.87 -3.70 -0.02 0.74 16 5 N -0.53 -8.55 4.77 -235.76 -1.13 -9.67 16 6 C 0.12 1.47 5.42 -4.97 -0.03 1.44 16 7 C 0.03 0.44 4.86 -82.21 -0.40 0.04 16 8 C -0.17 -2.37 9.45 -39.35 -0.37 -2.74 16 9 C -0.01 -0.22 7.17 -82.78 -0.59 -0.81 16 10 C 0.58 7.85 8.34 34.54 0.29 8.14 16 11 O -0.51 -7.91 17.71 -19.26 -0.34 -8.25 16 12 O -0.50 -5.28 13.44 -40.57 -0.55 -5.83 16 13 N -0.23 -3.31 11.99 33.41 0.40 -2.91 16 14 N -0.26 -3.26 3.70 -63.85 -0.24 -3.49 16 15 C 0.09 0.75 11.11 59.85 0.66 1.41 16 16 C 0.05 0.83 4.33 -3.70 -0.02 0.82 16 17 C 0.17 3.74 3.66 -67.49 -0.25 3.49 16 18 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 19 C -0.13 -2.62 8.19 37.16 0.30 -2.32 16 20 N -0.58 -13.76 2.81 -157.01 -0.44 -14.20 16 21 C -0.27 -6.94 6.69 -15.06 -0.10 -7.04 16 22 H 0.05 1.33 7.22 -52.49 -0.38 0.95 16 23 C 0.04 1.07 3.21 -17.43 -0.06 1.02 16 24 N -0.87 -24.14 12.11 55.49 0.67 -23.47 16 25 Si 0.88 20.54 29.61 -169.99 -5.03 15.50 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.08 2.06 5.15 -51.93 -0.27 1.79 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.08 7.69 -51.93 -0.40 0.68 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 34 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 35 H 0.08 0.86 7.16 -51.93 -0.37 0.49 16 36 H 0.16 2.17 8.06 -52.49 -0.42 1.74 16 37 H 0.41 2.10 9.11 45.56 0.42 2.52 16 38 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.66 7.05 -51.93 -0.37 0.30 16 41 H 0.06 1.11 5.75 -51.93 -0.30 0.81 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.99 7.63 -51.93 -0.40 0.59 16 44 H 0.07 1.47 7.65 -51.93 -0.40 1.07 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -31.93 368.04 -7.84 -39.77 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.24 Total: 1.41 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.49 Total: 5.59 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.73 Total: -53.75 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.89 Total: -14.08 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.93 -7.84 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589399052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.511 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds