Wall clock time and date at job start Tue Mar 31 2020 14:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.78207 * 2 1 4 4 C 1.53239 * 109.62819 * 239.51725 * 2 1 3 5 5 N 1.46900 * 109.33825 * 186.46081 * 4 2 1 6 6 C 1.46899 * 110.99741 * 187.24996 * 5 4 2 7 7 C 1.50707 * 109.47007 * 189.99819 * 6 5 4 8 8 C 1.35346 * 126.37673 * 94.68722 * 7 6 5 9 9 C 1.41545 * 105.49691 * 179.97438 * 8 7 6 10 10 C 1.47587 * 126.51931 * 180.13334 * 9 8 7 11 11 O 1.21487 * 120.00464 * 0.22827 * 10 9 8 12 12 O 1.34728 * 119.99890 * 180.23253 * 10 9 8 13 13 N 1.31853 * 106.95526 * 0.34771 * 9 8 7 14 14 N 1.28467 * 110.06074 * 359.77967 * 13 9 8 15 15 C 1.46503 * 124.87597 * 179.97438 * 14 13 9 16 16 C 1.46898 * 111.26914 * 63.10279 * 5 4 2 17 17 C 1.53238 * 109.33991 * 296.89502 * 16 5 4 18 18 H 1.09000 * 109.78843 * 294.02310 * 17 16 5 19 19 C 1.53002 * 109.62944 * 173.54035 * 17 16 5 20 20 N 1.47076 * 108.52059 * 53.83213 * 17 16 5 21 21 C 1.36943 * 120.88268 * 128.84041 * 20 17 16 22 22 H 1.08001 * 119.99236 * 306.46363 * 21 20 17 23 23 C 1.38810 * 120.00072 * 126.46755 * 21 20 17 24 24 N 1.31612 * 120.00001 * 338.08008 * 23 21 20 25 25 Si 1.86805 * 119.99723 * 158.07712 * 23 21 20 26 26 H 1.48501 * 109.46698 * 89.99988 * 25 23 21 27 27 H 1.48502 * 109.47029 * 209.99781 * 25 23 21 28 28 H 1.48495 * 109.47026 * 330.00174 * 25 23 21 29 29 H 1.08997 * 109.47363 * 307.36859 * 1 2 3 30 30 H 1.08997 * 109.47095 * 67.37393 * 1 2 3 31 31 H 1.08996 * 109.46880 * 187.36803 * 1 2 3 32 32 H 1.09003 * 109.49384 * 306.41809 * 4 2 1 33 33 H 1.09000 * 109.49382 * 66.46796 * 4 2 1 34 34 H 1.08999 * 109.47541 * 309.99709 * 6 5 4 35 35 H 1.08998 * 109.47028 * 70.00404 * 6 5 4 36 36 H 1.07994 * 127.25147 * 0.02562 * 8 7 6 37 37 H 0.96696 * 117.00362 * 179.97438 * 12 10 9 38 38 H 1.09007 * 109.46992 * 270.00493 * 15 14 13 39 39 H 1.09000 * 109.47052 * 30.00525 * 15 14 13 40 40 H 1.08998 * 109.46992 * 150.00817 * 15 14 13 41 41 H 1.09003 * 109.49306 * 176.93402 * 16 5 4 42 42 H 1.08998 * 109.49245 * 56.85364 * 16 5 4 43 43 H 1.09005 * 109.46907 * 300.97117 * 19 17 16 44 44 H 1.09001 * 109.46966 * 180.96964 * 19 17 16 45 45 H 1.09000 * 109.46835 * 60.96957 * 19 17 16 46 46 H 0.97006 * 119.99597 * 185.06108 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7322 -1.2438 5 7 3.5055 -0.8643 -1.1609 6 6 4.0568 -1.4061 -2.4100 7 6 5.5084 -1.7571 -2.2079 8 6 6.0016 -2.9732 -1.8762 9 6 7.4051 -2.8050 -1.8030 10 6 8.3985 -3.8461 -1.4757 11 8 8.0342 -4.9808 -1.2399 12 8 9.7096 -3.5382 -1.4383 13 7 7.6556 -1.5401 -2.0784 14 7 6.5587 -0.9154 -2.3169 15 6 6.4613 0.5061 -2.6577 16 6 3.9016 -1.6870 -0.0102 17 6 3.4629 -0.9940 1.2842 18 1 4.0174 -0.0642 1.4112 19 6 3.7267 -1.9164 2.4761 20 7 2.0241 -0.7028 1.1938 21 6 1.1672 -1.0757 2.1948 22 1 1.1429 -2.1020 2.5302 23 6 0.3300 -0.1347 2.7782 24 7 0.6286 1.1452 2.7079 25 14 -1.2205 -0.6850 3.6629 26 1 -0.9120 -0.9330 5.0942 27 1 -2.2544 0.3756 3.5558 28 1 -1.7274 -1.9351 3.0420 29 1 -0.3634 0.6237 0.8167 30 1 -0.3633 0.3953 -0.9485 31 1 -0.3633 -1.0192 0.1318 32 1 1.5924 -1.7225 -1.2962 33 1 1.7806 -0.1640 -2.1358 34 1 3.5028 -2.3009 -2.6938 35 1 3.9702 -0.6594 -3.1994 36 1 5.4421 -3.8808 -1.7044 37 1 10.3225 -4.2533 -1.2189 38 1 6.3532 1.0920 -1.7448 39 1 7.3642 0.8164 -3.1838 40 1 5.5941 0.6677 -3.2979 41 1 4.9846 -1.8111 -0.0073 42 1 3.4233 -2.6640 -0.0797 43 1 3.1766 -2.8480 2.3432 44 1 3.3980 -1.4279 3.3933 45 1 4.7935 -2.1305 2.5406 46 1 0.0842 1.7966 3.1773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589399052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:18 Heat of formation + Delta-G solvation = 6.775198 kcal Electronic energy + Delta-G solvation = -28602.091168 eV Core-core repulsion = 24721.876031 eV Total energy + Delta-G solvation = -3880.215137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.87264 -40.92843 -40.01412 -37.12810 -36.78306 -34.59145 -34.36814 -33.65607 -32.01324 -29.48236 -28.77882 -28.00004 -27.27228 -26.14681 -25.02640 -23.27319 -22.19354 -22.03163 -21.05602 -20.74855 -18.82669 -18.14071 -18.06144 -17.63030 -17.17788 -16.91887 -16.50556 -16.10718 -16.01397 -15.95212 -15.51682 -15.03860 -14.90240 -14.64943 -14.43586 -13.85215 -13.66691 -13.51122 -13.39361 -13.32731 -13.26920 -12.97057 -12.69973 -12.64153 -12.61804 -12.37112 -12.29343 -12.09161 -12.06146 -11.97697 -11.90091 -11.53085 -11.50234 -11.18798 -10.28442 -10.16840 -10.06730 -9.23223 -8.27415 -7.70211 -5.52469 0.22418 0.90368 1.41238 1.42580 1.47786 1.55288 2.04428 2.12877 2.49263 3.05920 3.25003 3.36722 3.48036 3.60929 4.08293 4.24308 4.25980 4.31513 4.33161 4.41076 4.53002 4.56602 4.64145 4.64681 4.66473 4.75366 4.76727 4.81431 4.89726 4.90247 4.96553 5.01436 5.05776 5.22347 5.27503 5.45304 5.45979 5.50369 5.70656 5.73727 5.78256 5.86887 6.15208 6.22160 6.61704 6.72370 7.01077 7.29535 7.86274 8.60834 9.16779 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.003441 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.596846 B = 8135.789033 C = 8845.066406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.195 3.805 3 H 0.004 0.996 4 C 0.057 3.943 5 N -0.535 5.535 6 C 0.122 3.878 7 C 0.032 3.968 8 C -0.181 4.181 9 C -0.036 4.036 10 C 0.582 3.418 11 O -0.536 6.536 12 O -0.498 6.498 13 N -0.245 5.245 14 N -0.256 5.256 15 C 0.077 3.923 16 C 0.067 3.933 17 C 0.167 3.833 18 H 0.000 1.000 19 C -0.120 4.120 20 N -0.593 5.593 21 C -0.269 4.269 22 H 0.040 0.960 23 C 0.006 3.994 24 N -0.907 5.907 25 Si 0.932 3.068 26 H -0.285 1.285 27 H -0.288 1.288 28 H -0.269 1.269 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.028 0.972 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.163 0.837 37 H 0.435 0.565 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.047 0.953 44 H 0.039 0.961 45 H 0.058 0.942 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.328 -3.225 -14.337 18.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.089 3.911 3 H 0.022 0.978 4 C -0.072 4.072 5 N -0.259 5.259 6 C -0.006 4.006 7 C -0.093 4.093 8 C -0.209 4.209 9 C -0.191 4.191 10 C 0.425 3.575 11 O -0.425 6.425 12 O -0.311 6.311 13 N -0.084 5.084 14 N -0.046 5.046 15 C -0.061 4.061 16 C -0.063 4.063 17 C 0.061 3.939 18 H 0.018 0.982 19 C -0.178 4.178 20 N -0.319 5.319 21 C -0.399 4.399 22 H 0.057 0.943 23 C -0.194 4.194 24 N -0.548 5.548 25 Si 0.760 3.240 26 H -0.212 1.212 27 H -0.214 1.214 28 H -0.193 1.193 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.180 0.820 37 H 0.297 0.703 38 H 0.108 0.892 39 H 0.132 0.868 40 H 0.141 0.859 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.931 -1.706 -14.430 18.801 hybrid contribution -1.347 -1.774 1.247 2.553 sum 10.584 -3.480 -13.183 17.261 Atomic orbital electron populations 1.21790 0.95739 1.00989 1.00539 1.20276 0.92880 0.92672 0.85228 0.97809 1.22624 0.85852 0.99337 0.99338 1.62048 1.11533 1.50190 1.02167 1.20769 0.85544 1.01027 0.93265 1.21345 0.92360 0.89767 1.05803 1.21612 0.92046 0.99314 1.07949 1.20707 0.92946 0.91433 1.14033 1.19215 0.81443 0.84887 0.71986 1.90902 1.81632 1.22251 1.47678 1.84601 1.16832 1.47529 1.82155 1.73638 1.12058 1.06155 1.16562 1.45793 1.02111 1.11324 1.45395 1.22598 1.06968 0.72571 1.03993 1.22428 0.98950 0.93857 0.91049 1.20605 0.86079 0.94228 0.92945 0.98193 1.21568 0.99445 0.98849 0.97899 1.44300 1.01321 1.68302 1.17930 1.18653 1.15494 0.91575 1.14185 0.94274 1.26011 1.01556 0.95268 0.96561 1.70174 1.39109 1.01635 1.43836 0.85872 0.81339 0.78019 0.78797 1.21195 1.21439 1.19343 0.92892 0.92488 0.94092 0.95341 0.88772 0.91229 0.86556 0.81955 0.70282 0.89212 0.86819 0.85930 0.91376 0.95741 0.93418 0.94221 0.92308 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.61 7.98 71.98 0.57 -5.03 16 2 C 0.20 8.39 3.21 44.96 0.14 8.53 16 3 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 4 C 0.06 1.85 4.87 86.38 0.42 2.27 16 5 N -0.53 -15.95 4.77 -899.81 -4.29 -20.24 16 6 C 0.12 2.62 5.42 85.56 0.46 3.08 16 7 C 0.03 0.76 4.86 41.40 0.20 0.96 16 8 C -0.18 -4.78 9.45 22.42 0.21 -4.57 16 9 C -0.04 -1.00 7.17 42.42 0.30 -0.70 16 10 C 0.58 15.29 8.34 70.29 0.59 15.87 16 11 O -0.54 -16.39 17.71 19.88 0.35 -16.03 16 12 O -0.50 -9.72 13.44 -56.38 -0.76 -10.47 16 13 N -0.24 -6.50 11.99 -48.22 -0.58 -7.07 16 14 N -0.26 -5.78 3.70 -355.92 -1.32 -7.09 16 15 C 0.08 1.09 11.11 127.77 1.42 2.51 16 16 C 0.07 2.31 4.33 86.38 0.37 2.69 16 17 C 0.17 7.22 3.66 44.96 0.16 7.39 16 18 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 19 C -0.12 -4.89 8.19 71.98 0.59 -4.30 16 20 N -0.59 -28.49 2.81 -650.65 -1.83 -30.32 16 21 C -0.27 -14.12 6.69 84.03 0.56 -13.56 16 22 H 0.04 2.13 7.22 -2.91 -0.02 2.11 16 23 C 0.01 0.31 3.21 84.86 0.27 0.59 16 24 N -0.91 -51.25 12.11 21.65 0.26 -50.99 16 25 Si 0.93 42.73 29.61 68.60 2.03 44.76 16 26 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 27 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 29 H 0.05 2.59 5.15 -2.39 -0.01 2.58 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.76 7.69 -2.39 -0.02 1.74 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 2.44 8.11 -2.39 -0.02 2.42 16 34 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 35 H 0.12 1.79 7.16 -2.39 -0.02 1.78 16 36 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.43 3.68 9.11 -74.06 -0.67 3.01 16 38 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.12 1.15 7.05 -2.39 -0.02 1.13 16 41 H 0.07 2.31 5.75 -2.39 -0.01 2.29 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.05 1.93 7.63 -2.38 -0.02 1.91 16 44 H 0.04 1.79 7.65 -2.39 -0.02 1.77 16 45 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.25 13.83 8.32 -92.70 -0.77 13.06 16 Total: -1.00 -70.44 368.04 0.48 -69.95 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.32 Total: 11.76 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.29 Total: 15.74 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -7.75 Total: -115.72 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.41 Total: -26.51 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -70.44 0.48 -69.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589399052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.730 kcal (2) G-P(sol) polarization free energy of solvation -70.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds