Wall clock time and date at job start Tue Mar 31 2020 14:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09008 * 109.77982 * 2 1 4 4 C 1.53234 * 109.62764 * 120.48197 * 2 1 3 5 5 N 1.46907 * 109.33821 * 173.53924 * 4 2 1 6 6 C 1.46894 * 110.99917 * 172.74862 * 5 4 2 7 7 C 1.50708 * 109.47410 * 314.30538 * 6 5 4 8 8 C 1.35340 * 126.37950 * 94.68731 * 7 6 5 9 9 C 1.41555 * 105.50134 * 179.86853 * 8 7 6 10 10 C 1.47575 * 126.52303 * 180.18761 * 9 8 7 11 11 O 1.21492 * 120.00210 * 0.27431 * 10 9 8 12 12 O 1.34725 * 120.00083 * 180.27830 * 10 9 8 13 13 N 1.31851 * 106.94756 * 0.39967 * 9 8 7 14 14 N 1.28462 * 110.06756 * 359.74841 * 13 9 8 15 15 C 1.46508 * 124.88279 * 179.97438 * 14 13 9 16 16 C 1.46891 * 111.27063 * 296.90097 * 5 4 2 17 17 C 1.53242 * 109.34365 * 63.10072 * 16 5 4 18 18 H 1.08995 * 109.62878 * 186.46158 * 17 16 5 19 19 C 1.53007 * 109.78377 * 65.97330 * 17 16 5 20 20 N 1.47076 * 108.52224 * 306.17329 * 17 16 5 21 21 C 1.36938 * 120.88109 * 230.90800 * 20 17 16 22 22 H 1.08004 * 119.99539 * 53.82978 * 21 20 17 23 23 C 1.38806 * 119.99944 * 233.82353 * 21 20 17 24 24 N 1.31623 * 120.00356 * 209.73416 * 23 21 20 25 25 Si 1.86804 * 119.99910 * 29.74318 * 23 21 20 26 26 H 1.48497 * 109.47459 * 92.69355 * 25 23 21 27 27 H 1.48504 * 109.46772 * 212.69034 * 25 23 21 28 28 H 1.48495 * 109.46981 * 332.68745 * 25 23 21 29 29 H 1.08998 * 109.46571 * 172.79337 * 1 2 3 30 30 H 1.09004 * 109.46901 * 292.79658 * 1 2 3 31 31 H 1.08998 * 109.46911 * 52.79782 * 1 2 3 32 32 H 1.09005 * 109.49003 * 53.58456 * 4 2 1 33 33 H 1.08998 * 109.51999 * 293.51294 * 4 2 1 34 34 H 1.08997 * 109.47432 * 74.30284 * 6 5 4 35 35 H 1.08995 * 109.47429 * 194.30456 * 6 5 4 36 36 H 1.08001 * 127.25010 * 359.97438 * 8 7 6 37 37 H 0.96705 * 117.00572 * 179.97438 * 12 10 9 38 38 H 1.08997 * 109.46858 * 270.02456 * 15 14 13 39 39 H 1.09002 * 109.46725 * 30.02363 * 15 14 13 40 40 H 1.08991 * 109.47149 * 150.02719 * 15 14 13 41 41 H 1.09000 * 109.49494 * 303.14070 * 16 5 4 42 42 H 1.09000 * 109.49282 * 183.06771 * 16 5 4 43 43 H 1.08993 * 109.47287 * 300.87910 * 19 17 16 44 44 H 1.09005 * 109.46576 * 60.87634 * 19 17 16 45 45 H 1.09001 * 109.46660 * 180.87347 * 19 17 16 46 46 H 0.96994 * 120.00142 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8990 1.0258 0.0000 4 6 2.0448 -0.7321 1.2438 5 7 3.5056 -0.8643 1.1609 6 6 4.0569 -1.4060 2.4100 7 6 3.4374 -0.6921 3.5838 8 6 2.3610 -1.1010 4.2951 9 6 2.1648 -0.1107 5.2874 10 6 1.1122 -0.1002 6.3216 11 8 0.3076 -1.0087 6.3788 12 8 1.0434 0.9170 7.2024 13 7 3.0988 0.8027 5.1087 14 7 3.8495 0.4777 4.1183 15 6 4.9885 1.2634 3.6371 16 6 3.9017 -1.6869 0.0102 17 6 3.4630 -0.9939 -1.2843 18 1 3.6509 -1.6510 -2.1333 19 6 4.2413 0.3114 -1.4623 20 7 2.0242 -0.7027 -1.1939 21 6 1.1681 -1.0711 -2.1972 22 1 1.1404 -2.0970 -2.5338 23 6 0.3360 -0.1262 -2.7814 24 7 -0.8300 -0.4895 -3.2722 25 14 0.8711 1.6613 -2.8714 26 1 1.5539 1.9091 -4.1666 27 1 -0.3207 2.5408 -2.7640 28 1 1.8053 1.9551 -1.7551 29 1 -0.3632 -1.0196 -0.1289 30 1 -0.3633 0.3982 0.9474 31 1 -0.3633 0.6214 -0.8185 32 1 1.5924 -1.7225 1.2961 33 1 1.7811 -0.1642 2.1360 34 1 3.8341 -2.4711 2.4738 35 1 5.1368 -1.2593 2.4243 36 1 1.7760 -1.9954 4.1395 37 1 0.3365 0.8802 7.8613 38 1 4.6488 1.9691 2.8790 39 1 5.4307 1.8099 4.4701 40 1 5.7334 0.5959 3.2041 41 1 3.4235 -2.6640 0.0797 42 1 4.9846 -1.8110 0.0074 43 1 4.0570 0.9636 -0.6088 44 1 5.3071 0.0926 -1.5290 45 1 3.9143 0.8075 -2.3761 46 1 -1.4112 0.1708 -3.6808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589399054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:22 Heat of formation + Delta-G solvation = 32.196651 kcal Electronic energy + Delta-G solvation = -28938.941641 eV Core-core repulsion = 25059.828861 eV Total energy + Delta-G solvation = -3879.112780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.92705 -39.94469 -38.78094 -36.17972 -35.31689 -33.66488 -32.94135 -31.79479 -30.98049 -28.35973 -27.97344 -26.59754 -26.06865 -24.22741 -23.91467 -22.16300 -21.28776 -20.99681 -20.08635 -18.51374 -17.86968 -17.17069 -16.76993 -16.51079 -16.29147 -15.61636 -15.27008 -14.78614 -14.71192 -14.39858 -14.13342 -13.99561 -13.51231 -13.41174 -12.98310 -12.83092 -12.74446 -12.63829 -12.25837 -12.09864 -12.06683 -11.68454 -11.47981 -11.17543 -11.09629 -11.03336 -10.94322 -10.71597 -10.60770 -10.53283 -10.00989 -9.93507 -9.80429 -9.47321 -9.33305 -9.07438 -8.29103 -8.02159 -6.45125 -6.09652 -3.57934 1.22399 1.87390 2.22712 2.96055 3.07743 3.37005 3.47982 3.56007 4.18693 4.23980 4.41858 4.53561 4.88199 4.93486 4.93862 4.99369 5.20765 5.23172 5.36122 5.42691 5.51171 5.59921 5.71374 5.78414 5.90141 5.93393 6.08401 6.19364 6.21929 6.22303 6.28661 6.38605 6.40515 6.53359 6.55920 6.58495 6.74638 6.83803 7.00729 7.14724 7.33157 7.36023 7.52053 7.61919 7.90235 8.06779 8.53294 9.05243 9.67910 10.27959 11.04204 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.004165 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.348451 B = 6721.258482 C = 7512.104152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.173 3.827 3 H 0.033 0.967 4 C 0.045 3.955 5 N -0.528 5.528 6 C 0.118 3.882 7 C 0.031 3.969 8 C -0.167 4.167 9 C -0.014 4.014 10 C 0.577 3.423 11 O -0.507 6.507 12 O -0.504 6.504 13 N -0.235 5.235 14 N -0.262 5.262 15 C 0.088 3.912 16 C 0.051 3.949 17 C 0.165 3.835 18 H 0.072 0.928 19 C -0.153 4.153 20 N -0.591 5.591 21 C -0.283 4.283 22 H 0.066 0.934 23 C 0.068 3.932 24 N -0.880 5.880 25 Si 0.850 3.150 26 H -0.290 1.290 27 H -0.298 1.298 28 H -0.254 1.254 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.164 0.836 37 H 0.413 0.587 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.035 0.965 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.036 0.964 45 H 0.044 0.956 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.991 1.562 15.922 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.068 3.932 3 H 0.050 0.950 4 C -0.084 4.084 5 N -0.254 5.254 6 C -0.011 4.011 7 C -0.093 4.093 8 C -0.196 4.196 9 C -0.170 4.170 10 C 0.419 3.581 11 O -0.393 6.393 12 O -0.314 6.314 13 N -0.073 5.073 14 N -0.051 5.051 15 C -0.052 4.052 16 C -0.078 4.078 17 C 0.059 3.941 18 H 0.090 0.910 19 C -0.212 4.212 20 N -0.315 5.315 21 C -0.412 4.412 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.518 5.518 25 Si 0.677 3.323 26 H -0.217 1.217 27 H -0.225 1.225 28 H -0.179 1.179 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.181 0.819 37 H 0.271 0.729 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.571 2.881 15.858 20.440 hybrid contribution -0.897 -0.334 0.010 0.957 sum 11.673 2.547 15.868 19.863 Atomic orbital electron populations 1.21822 0.94876 1.03405 0.98966 1.20747 0.93258 0.94029 0.85212 0.94956 1.22800 0.85798 1.00000 0.99779 1.62133 1.12395 1.49974 1.00857 1.20656 0.98716 0.95997 0.85682 1.21272 0.98631 0.89796 0.99618 1.21494 0.99176 1.02277 0.96623 1.20488 0.98970 0.96920 1.00593 1.19254 0.81483 0.78734 0.78676 1.90927 1.40052 1.36777 1.71565 1.84645 1.56087 1.47138 1.43553 1.73662 1.03924 1.23662 1.06048 1.45406 1.22855 1.16119 1.20743 1.22223 0.85165 0.96517 1.01302 1.22617 0.98872 0.94672 0.91660 1.20784 0.85633 0.94234 0.93494 0.91007 1.22151 0.97759 1.00054 1.01252 1.44392 1.01193 1.68623 1.17322 1.18392 1.16127 0.93572 1.13079 0.91672 1.25829 0.95266 0.97621 0.94848 1.70016 1.07315 1.35116 1.39319 0.87304 0.78760 0.87378 0.78894 1.21747 1.22501 1.17856 0.91267 0.95061 0.91985 0.94596 0.91755 0.92202 0.89770 0.81880 0.72868 0.88921 0.88750 0.88320 0.94702 0.91668 0.92666 0.94450 0.93699 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 7.93 37.16 0.29 -2.65 16 2 C 0.17 3.65 2.11 -67.49 -0.14 3.50 16 3 H 0.03 0.73 6.34 -51.92 -0.33 0.40 16 4 C 0.05 0.79 4.33 -3.70 -0.02 0.78 16 5 N -0.53 -7.72 4.28 -235.77 -1.01 -8.73 16 6 C 0.12 1.35 5.42 -4.98 -0.03 1.32 16 7 C 0.03 0.38 4.86 -82.21 -0.40 -0.01 16 8 C -0.17 -2.29 9.45 -39.35 -0.37 -2.66 16 9 C -0.01 -0.19 7.17 -82.79 -0.59 -0.79 16 10 C 0.58 7.84 8.34 34.54 0.29 8.13 16 11 O -0.51 -7.93 17.71 -19.26 -0.34 -8.27 16 12 O -0.50 -5.30 13.44 -40.56 -0.55 -5.84 16 13 N -0.23 -3.24 11.99 33.41 0.40 -2.84 16 14 N -0.26 -3.12 3.70 -63.85 -0.24 -3.36 16 15 C 0.09 0.69 11.11 59.85 0.66 1.36 16 16 C 0.05 0.77 4.98 -3.70 -0.02 0.75 16 17 C 0.17 3.09 3.31 -67.49 -0.22 2.86 16 18 H 0.07 1.38 7.95 -51.93 -0.41 0.97 16 19 C -0.15 -2.67 9.22 37.16 0.34 -2.33 16 20 N -0.59 -13.26 1.93 -157.00 -0.30 -13.56 16 21 C -0.28 -7.52 8.60 -15.06 -0.13 -7.65 16 22 H 0.07 1.91 8.06 -52.48 -0.42 1.48 16 23 C 0.07 1.87 3.56 -17.43 -0.06 1.81 16 24 N -0.88 -25.59 13.97 55.49 0.78 -24.81 16 25 Si 0.85 21.31 25.54 -169.99 -4.34 16.97 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.25 -6.18 5.66 56.52 0.32 -5.86 16 29 H 0.07 1.65 7.70 -51.93 -0.40 1.25 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.51 4.35 -51.93 -0.23 1.29 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.12 5.74 -51.93 -0.30 0.82 16 34 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.08 0.76 7.16 -51.93 -0.37 0.39 16 36 H 0.16 2.15 8.06 -52.49 -0.42 1.72 16 37 H 0.41 2.14 9.11 45.56 0.42 2.55 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.57 7.04 -51.93 -0.37 0.21 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 43 H 0.05 0.99 7.10 -51.93 -0.37 0.62 16 44 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.04 0.87 7.66 -51.93 -0.40 0.48 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -32.94 362.42 -6.72 -39.67 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.19 Total: 0.89 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.39 Total: 4.42 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.37 Total: -53.30 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.89 Total: -14.12 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.34 Total: 16.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.94 -6.72 -39.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589399054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.864 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds