Wall clock time and date at job start Tue Mar 31 2020 14:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09008 * 109.77982 * 2 1 4 4 C 1.53234 * 109.62764 * 120.48197 * 2 1 3 5 5 N 1.46907 * 109.33821 * 173.53924 * 4 2 1 6 6 C 1.46894 * 110.99917 * 172.74862 * 5 4 2 7 7 C 1.50708 * 109.47410 * 314.30538 * 6 5 4 8 8 C 1.35340 * 126.37950 * 94.68731 * 7 6 5 9 9 C 1.41555 * 105.50134 * 179.86853 * 8 7 6 10 10 C 1.47575 * 126.52303 * 180.18761 * 9 8 7 11 11 O 1.21492 * 120.00210 * 0.27431 * 10 9 8 12 12 O 1.34725 * 120.00083 * 180.27830 * 10 9 8 13 13 N 1.31851 * 106.94756 * 0.39967 * 9 8 7 14 14 N 1.28462 * 110.06756 * 359.74841 * 13 9 8 15 15 C 1.46508 * 124.88279 * 179.97438 * 14 13 9 16 16 C 1.46891 * 111.27063 * 296.90097 * 5 4 2 17 17 C 1.53242 * 109.34365 * 63.10072 * 16 5 4 18 18 H 1.08995 * 109.62878 * 186.46158 * 17 16 5 19 19 C 1.53007 * 109.78377 * 65.97330 * 17 16 5 20 20 N 1.47076 * 108.52224 * 306.17329 * 17 16 5 21 21 C 1.36938 * 120.88109 * 230.90800 * 20 17 16 22 22 H 1.08004 * 119.99539 * 53.82978 * 21 20 17 23 23 C 1.38806 * 119.99944 * 233.82353 * 21 20 17 24 24 N 1.31623 * 120.00356 * 209.73416 * 23 21 20 25 25 Si 1.86804 * 119.99910 * 29.74318 * 23 21 20 26 26 H 1.48497 * 109.47459 * 92.69355 * 25 23 21 27 27 H 1.48504 * 109.46772 * 212.69034 * 25 23 21 28 28 H 1.48495 * 109.46981 * 332.68745 * 25 23 21 29 29 H 1.08998 * 109.46571 * 172.79337 * 1 2 3 30 30 H 1.09004 * 109.46901 * 292.79658 * 1 2 3 31 31 H 1.08998 * 109.46911 * 52.79782 * 1 2 3 32 32 H 1.09005 * 109.49003 * 53.58456 * 4 2 1 33 33 H 1.08998 * 109.51999 * 293.51294 * 4 2 1 34 34 H 1.08997 * 109.47432 * 74.30284 * 6 5 4 35 35 H 1.08995 * 109.47429 * 194.30456 * 6 5 4 36 36 H 1.08001 * 127.25010 * 359.97438 * 8 7 6 37 37 H 0.96705 * 117.00572 * 179.97438 * 12 10 9 38 38 H 1.08997 * 109.46858 * 270.02456 * 15 14 13 39 39 H 1.09002 * 109.46725 * 30.02363 * 15 14 13 40 40 H 1.08991 * 109.47149 * 150.02719 * 15 14 13 41 41 H 1.09000 * 109.49494 * 303.14070 * 16 5 4 42 42 H 1.09000 * 109.49282 * 183.06771 * 16 5 4 43 43 H 1.08993 * 109.47287 * 300.87910 * 19 17 16 44 44 H 1.09005 * 109.46576 * 60.87634 * 19 17 16 45 45 H 1.09001 * 109.46660 * 180.87347 * 19 17 16 46 46 H 0.96994 * 120.00142 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8990 1.0258 0.0000 4 6 2.0448 -0.7321 1.2438 5 7 3.5056 -0.8643 1.1609 6 6 4.0569 -1.4060 2.4100 7 6 3.4374 -0.6921 3.5838 8 6 2.3610 -1.1010 4.2951 9 6 2.1648 -0.1107 5.2874 10 6 1.1122 -0.1002 6.3216 11 8 0.3076 -1.0087 6.3788 12 8 1.0434 0.9170 7.2024 13 7 3.0988 0.8027 5.1087 14 7 3.8495 0.4777 4.1183 15 6 4.9885 1.2634 3.6371 16 6 3.9017 -1.6869 0.0102 17 6 3.4630 -0.9939 -1.2843 18 1 3.6509 -1.6510 -2.1333 19 6 4.2413 0.3114 -1.4623 20 7 2.0242 -0.7027 -1.1939 21 6 1.1681 -1.0711 -2.1972 22 1 1.1404 -2.0970 -2.5338 23 6 0.3360 -0.1262 -2.7814 24 7 -0.8300 -0.4895 -3.2722 25 14 0.8711 1.6613 -2.8714 26 1 1.5539 1.9091 -4.1666 27 1 -0.3207 2.5408 -2.7640 28 1 1.8053 1.9551 -1.7551 29 1 -0.3632 -1.0196 -0.1289 30 1 -0.3633 0.3982 0.9474 31 1 -0.3633 0.6214 -0.8185 32 1 1.5924 -1.7225 1.2961 33 1 1.7811 -0.1642 2.1360 34 1 3.8341 -2.4711 2.4738 35 1 5.1368 -1.2593 2.4243 36 1 1.7760 -1.9954 4.1395 37 1 0.3365 0.8802 7.8613 38 1 4.6488 1.9691 2.8790 39 1 5.4307 1.8099 4.4701 40 1 5.7334 0.5959 3.2041 41 1 3.4235 -2.6640 0.0797 42 1 4.9846 -1.8110 0.0074 43 1 4.0570 0.9636 -0.6088 44 1 5.3071 0.0926 -1.5290 45 1 3.9143 0.8075 -2.3761 46 1 -1.4112 0.1708 -3.6808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589399054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:21 Heat of formation + Delta-G solvation = 7.602368 kcal Electronic energy + Delta-G solvation = -28940.008129 eV Core-core repulsion = 25059.828861 eV Total energy + Delta-G solvation = -3880.179268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.86839 -40.93884 -40.20813 -37.13802 -36.78675 -34.56798 -34.46689 -33.62446 -32.21863 -30.01686 -28.76880 -27.94881 -27.38601 -25.76924 -25.01649 -23.56878 -22.67155 -22.17811 -21.02497 -20.20657 -18.83311 -18.56152 -18.00239 -17.72027 -17.17788 -17.05866 -16.48670 -16.25904 -15.93072 -15.79735 -15.60057 -15.11710 -14.95731 -14.53019 -14.44602 -14.21453 -13.77764 -13.67085 -13.61648 -13.42555 -13.32638 -13.02493 -12.85378 -12.64356 -12.49455 -12.47291 -12.27900 -12.24829 -12.02960 -11.92271 -11.82100 -11.62550 -11.51522 -11.17056 -10.36050 -10.26707 -10.07062 -9.25304 -8.33160 -8.20494 -5.67976 0.21949 0.90886 1.33591 1.40962 1.42127 1.52486 2.03695 2.12991 2.44966 2.97916 3.03977 3.36570 3.45103 3.48808 4.09670 4.16862 4.25373 4.26806 4.33472 4.42726 4.50759 4.51597 4.57393 4.63055 4.65185 4.66225 4.76716 4.79146 4.88217 4.89148 4.92077 4.92797 5.09249 5.21056 5.22424 5.35918 5.40867 5.44982 5.55667 5.67013 5.72874 5.96794 6.11152 6.18445 6.36710 6.72071 7.00211 7.16263 7.67336 8.28675 8.94699 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.004165 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.348451 B = 6721.258482 C = 7512.104152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.172 3.828 3 H 0.026 0.974 4 C 0.064 3.936 5 N -0.525 5.525 6 C 0.123 3.877 7 C 0.033 3.967 8 C -0.184 4.184 9 C -0.037 4.037 10 C 0.580 3.420 11 O -0.537 6.537 12 O -0.498 6.498 13 N -0.245 5.245 14 N -0.255 5.255 15 C 0.076 3.924 16 C 0.061 3.939 17 C 0.154 3.846 18 H 0.061 0.939 19 C -0.142 4.142 20 N -0.603 5.603 21 C -0.269 4.269 22 H 0.026 0.974 23 C 0.030 3.970 24 N -0.925 5.925 25 Si 0.903 3.097 26 H -0.294 1.294 27 H -0.306 1.306 28 H -0.240 1.240 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.021 0.979 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.159 0.841 37 H 0.435 0.565 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.023 0.977 42 H 0.109 0.891 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.017 0.983 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.442 2.486 17.574 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.067 3.933 3 H 0.044 0.956 4 C -0.066 4.066 5 N -0.250 5.250 6 C -0.005 4.005 7 C -0.092 4.092 8 C -0.212 4.212 9 C -0.192 4.192 10 C 0.423 3.577 11 O -0.426 6.426 12 O -0.311 6.311 13 N -0.085 5.085 14 N -0.045 5.045 15 C -0.062 4.062 16 C -0.068 4.068 17 C 0.049 3.951 18 H 0.079 0.921 19 C -0.201 4.201 20 N -0.328 5.328 21 C -0.399 4.399 22 H 0.044 0.956 23 C -0.170 4.170 24 N -0.565 5.565 25 Si 0.730 3.270 26 H -0.222 1.222 27 H -0.233 1.233 28 H -0.163 1.163 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.177 0.823 37 H 0.297 0.703 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.042 0.958 42 H 0.127 0.873 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.036 0.964 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.069 3.831 17.558 24.107 hybrid contribution -1.922 -0.653 -0.442 2.078 sum 14.147 3.178 17.115 22.432 Atomic orbital electron populations 1.21735 0.96280 1.01270 0.99261 1.20727 0.92246 0.94010 0.86327 0.95603 1.22427 0.87981 0.98573 0.97631 1.62084 1.10062 1.50488 1.02357 1.20790 1.00499 0.96051 0.83202 1.21366 0.98188 0.89992 0.99629 1.21627 0.99974 1.02435 0.97206 1.20684 0.99668 0.97527 1.01324 1.19274 0.80982 0.78670 0.78790 1.90908 1.41203 1.37988 1.72511 1.84598 1.57099 1.45808 1.43615 1.73635 1.04193 1.23695 1.06946 1.45817 1.22935 1.15958 1.19764 1.22632 0.84405 0.97061 1.02098 1.22482 1.01241 0.93301 0.89752 1.20992 0.83284 0.95327 0.95516 0.92115 1.22017 0.99805 0.98537 0.99730 1.44491 1.02739 1.68706 1.16837 1.18184 1.16496 0.91857 1.13324 0.95634 1.26215 0.95120 1.00511 0.95157 1.70109 1.08601 1.36137 1.41682 0.86458 0.78074 0.83569 0.78916 1.22196 1.23331 1.16331 0.93878 0.92590 0.94473 0.96086 0.91328 0.91382 0.85815 0.82305 0.70314 0.88976 0.87083 0.85527 0.95846 0.87250 0.92816 0.90496 0.96366 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 7.93 71.98 0.57 -5.15 16 2 C 0.17 7.09 2.11 44.96 0.09 7.19 16 3 H 0.03 1.13 6.34 -2.38 -0.02 1.11 16 4 C 0.06 2.10 4.33 86.38 0.37 2.48 16 5 N -0.53 -13.32 4.28 -899.83 -3.85 -17.17 16 6 C 0.12 2.23 5.42 85.56 0.46 2.69 16 7 C 0.03 0.72 4.86 41.40 0.20 0.92 16 8 C -0.18 -4.77 9.45 22.42 0.21 -4.56 16 9 C -0.04 -1.02 7.17 42.42 0.30 -0.71 16 10 C 0.58 15.42 8.34 70.29 0.59 16.00 16 11 O -0.54 -16.82 17.71 19.86 0.35 -16.47 16 12 O -0.50 -9.82 13.44 -56.35 -0.76 -10.58 16 13 N -0.25 -6.25 11.99 -48.22 -0.58 -6.83 16 14 N -0.25 -5.22 3.70 -355.92 -1.32 -6.54 16 15 C 0.08 0.86 11.11 127.77 1.42 2.28 16 16 C 0.06 1.61 4.98 86.39 0.43 2.04 16 17 C 0.15 5.44 3.31 44.97 0.15 5.59 16 18 H 0.06 2.26 7.95 -2.39 -0.02 2.24 16 19 C -0.14 -4.47 9.22 71.98 0.66 -3.80 16 20 N -0.60 -26.82 1.93 -650.63 -1.25 -28.08 16 21 C -0.27 -14.68 8.60 84.03 0.72 -13.96 16 22 H 0.03 1.60 8.06 -2.91 -0.02 1.57 16 23 C 0.03 1.71 3.56 84.86 0.30 2.01 16 24 N -0.92 -55.91 13.97 21.65 0.30 -55.61 16 25 Si 0.90 44.85 25.54 68.60 1.75 46.60 16 26 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 27 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 28 H -0.24 -11.21 5.66 99.48 0.56 -10.64 16 29 H 0.04 2.11 7.70 -2.39 -0.02 2.09 16 30 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.04 1.83 4.35 -2.39 -0.01 1.82 16 32 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.07 2.25 5.74 -2.39 -0.01 2.23 16 34 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 35 H 0.12 1.37 7.16 -2.39 -0.02 1.36 16 36 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 37 H 0.43 3.86 9.11 -74.05 -0.67 3.18 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.13 0.72 7.04 -2.39 -0.02 0.70 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.11 2.02 8.11 -2.39 -0.02 2.01 16 43 H 0.05 1.71 7.10 -2.39 -0.02 1.69 16 44 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.02 0.64 7.66 -2.39 -0.02 0.63 16 46 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -74.74 362.42 1.33 -73.41 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.18 Total: 8.26 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 6.49 Total: 13.01 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -6.69 Total: -114.23 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.41 Total: -27.05 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.75 Total: 46.60 kcal Total: -74.74 1.33 -73.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589399054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.014 kcal (2) G-P(sol) polarization free energy of solvation -74.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds