Wall clock time and date at job start Tue Mar 31 2020 14:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.50271 * 2 1 4 4 C 1.53040 * 109.49889 * 239.92371 * 2 1 3 5 5 N 1.46839 * 109.52428 * 299.23271 * 4 2 1 6 6 C 1.38586 * 111.00151 * 174.16094 * 5 4 2 7 7 N 1.31219 * 126.47145 * 359.97438 * 6 5 4 8 8 N 1.28520 * 109.86197 * 179.97438 * 7 6 5 9 9 C 1.30294 * 110.05432 * 359.97438 * 8 7 6 10 10 C 1.50703 * 126.34897 * 179.73745 * 9 8 7 11 11 C 1.53006 * 109.46790 * 90.02729 * 10 9 8 12 12 C 1.50703 * 109.46790 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00253 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99682 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00135 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00028 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46879 * 60.00143 * 16 14 12 18 18 H 1.48499 * 109.47176 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47120 * 300.00588 * 16 14 12 20 20 N 1.36449 * 126.47520 * 179.97438 * 6 5 4 21 21 C 1.46495 * 127.13819 * 0.02562 * 20 6 5 22 22 C 1.46839 * 111.20306 * 298.26404 * 5 4 2 23 23 C 1.53041 * 109.52637 * 61.74068 * 22 5 4 24 24 C 1.53116 * 109.50262 * 120.11839 * 2 1 3 25 25 H 1.09003 * 109.51846 * 182.18669 * 24 2 1 26 26 C 1.50691 * 109.52658 * 302.38005 * 24 2 1 27 27 O 1.20830 * 119.99914 * 0.02562 * 26 24 2 28 28 O 1.34234 * 120.00194 * 179.97438 * 26 24 2 29 29 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47077 * 300.07844 * 1 2 3 31 31 H 1.09001 * 109.47447 * 60.07833 * 1 2 3 32 32 H 1.09001 * 109.45926 * 179.22161 * 4 2 1 33 33 H 1.08992 * 109.45434 * 59.25382 * 4 2 1 34 34 H 1.09002 * 109.47223 * 210.02534 * 10 9 8 35 35 H 1.08997 * 109.47102 * 330.03308 * 10 9 8 36 36 H 1.08993 * 109.47343 * 299.99855 * 11 10 9 37 37 H 1.08997 * 109.46825 * 60.00410 * 11 10 9 38 38 H 0.97000 * 119.99844 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.47123 * 270.02226 * 21 20 6 40 40 H 1.09000 * 109.47410 * 30.01490 * 21 20 6 41 41 H 1.08997 * 109.47813 * 150.01870 * 21 20 6 42 42 H 1.09002 * 109.46519 * 181.75433 * 22 5 4 43 43 H 1.09006 * 109.46248 * 301.72537 * 22 5 4 44 44 H 1.08995 * 109.50594 * 180.88045 * 23 22 5 45 45 H 1.08998 * 109.50446 * 60.76114 * 23 22 5 46 46 H 0.96700 * 116.99911 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0408 -0.7230 -1.2484 5 7 1.5675 -2.1130 -1.2387 6 6 1.9021 -2.7598 -2.4178 7 7 2.5521 -2.2429 -3.4337 8 7 2.6891 -3.1246 -4.3587 9 6 2.1398 -4.2473 -3.9907 10 6 2.0829 -5.5200 -4.7957 11 6 3.3150 -6.3735 -4.4880 12 6 3.2579 -7.6465 -5.2926 13 1 2.4258 -7.8288 -5.9566 14 6 4.2678 -8.5784 -5.1810 15 7 5.2808 -8.3566 -4.3720 16 14 4.1967 -10.1567 -6.1777 17 1 4.1711 -9.8270 -7.6255 18 1 5.3926 -10.9849 -5.8792 19 1 2.9696 -10.9128 -5.8205 20 7 1.6178 -4.0545 -2.7416 21 6 0.9026 -5.0349 -1.9209 22 6 2.0845 -2.8419 -0.0736 23 6 1.5749 -2.1823 1.2099 24 6 2.0412 -0.7242 1.2485 25 1 3.1305 -0.6906 1.2686 26 6 1.4924 -0.0524 2.4806 27 8 0.7662 0.9073 2.3728 28 8 1.8094 -0.5207 3.6980 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 3.1307 -0.7105 -1.2548 33 1 1.6667 -0.2180 -2.1389 34 1 1.1820 -6.0752 -4.5346 35 1 2.0652 -5.2773 -5.8582 36 1 4.2159 -5.8184 -4.7491 37 1 3.3327 -6.6161 -3.4256 38 1 5.9911 -9.0125 -4.2933 39 1 1.6152 -5.5775 -1.2997 40 1 0.1836 -4.5200 -1.2837 41 1 0.3770 -5.7366 -2.5685 42 1 1.7422 -3.8761 -0.1109 43 1 3.1743 -2.8195 -0.0854 44 1 1.9715 -2.7141 2.0747 45 1 0.4856 -2.2166 1.2290 46 1 1.4330 -0.0569 4.4585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589406584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:25 Heat of formation + Delta-G solvation = -12.758341 kcal Electronic energy + Delta-G solvation = -27840.782602 eV Core-core repulsion = 23959.720427 eV Total energy + Delta-G solvation = -3881.062175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.65818 -41.16134 -39.16388 -36.61349 -34.99012 -34.76682 -33.59914 -32.13318 -31.60940 -28.73738 -27.71094 -27.28624 -25.77150 -25.21523 -23.26198 -22.33512 -21.78581 -20.98129 -19.96936 -18.97816 -18.40949 -17.60030 -16.89412 -16.61910 -16.25112 -15.95686 -15.80508 -15.06905 -14.79060 -14.53871 -14.51175 -14.03990 -13.81361 -13.56564 -13.18661 -13.14950 -13.01813 -12.68202 -12.30532 -12.28443 -11.94938 -11.89817 -11.76984 -11.36073 -11.32694 -11.12722 -11.06915 -10.98219 -10.80886 -10.72122 -10.37041 -10.28207 -10.05440 -9.90646 -9.80185 -9.36987 -9.24106 -8.43135 -7.92158 -6.07756 -4.11978 1.80284 2.08963 2.50309 2.62311 3.23558 3.29177 3.34319 3.36663 3.65376 4.09225 4.20074 4.39183 4.47097 4.65047 4.78207 4.89060 4.90837 4.93837 5.03796 5.14860 5.17389 5.22415 5.25676 5.28333 5.37013 5.46159 5.49081 5.56732 5.60352 5.65611 5.79024 5.88647 5.95063 6.10652 6.16476 6.33796 6.36509 6.44278 6.62678 6.67908 6.91258 7.39208 7.51735 7.52648 7.66920 7.89607 8.27249 8.93997 9.20108 9.52748 11.03312 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.002541 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.795851 B =11017.726891 C =11554.666364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.072 4.072 3 H 0.090 0.910 4 C 0.078 3.922 5 N -0.445 5.445 6 C 0.334 3.666 7 N -0.323 5.323 8 N -0.295 5.295 9 C 0.213 3.787 10 C -0.031 4.031 11 C 0.033 3.967 12 C -0.525 4.525 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.483 5.483 21 C 0.076 3.924 22 C 0.048 3.952 23 C -0.106 4.106 24 C -0.081 4.081 25 H 0.110 0.890 26 C 0.485 3.515 27 O -0.506 6.506 28 O -0.516 6.516 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.025 0.975 37 H 0.013 0.987 38 H 0.262 0.738 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.952 13.628 16.910 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.091 4.091 3 H 0.108 0.892 4 C -0.048 4.048 5 N -0.169 5.169 6 C -0.022 4.022 7 N -0.168 5.168 8 N -0.133 5.133 9 C -0.055 4.055 10 C -0.071 4.071 11 C -0.005 4.005 12 C -0.563 4.563 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.178 5.178 21 C -0.067 4.067 22 C -0.079 4.079 23 C -0.144 4.144 24 C -0.100 4.100 25 H 0.128 0.872 26 C 0.328 3.672 27 O -0.394 6.394 28 O -0.328 6.328 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.043 0.957 37 H 0.032 0.968 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -9.601 14.641 15.821 23.597 hybrid contribution -0.072 -1.581 0.884 1.813 sum -9.673 13.060 16.704 23.306 Atomic orbital electron populations 1.22088 0.93464 1.02746 1.03114 1.21135 0.98162 0.98903 0.90904 0.89224 1.22067 0.98878 0.85040 0.98863 1.58585 1.57181 1.03243 0.97912 1.22408 1.00428 0.83552 0.95826 1.74498 1.17540 1.24938 0.99778 1.73994 1.20023 0.97714 1.21550 1.25541 0.96721 0.99167 0.84034 1.20440 1.02326 0.86727 0.97567 1.19054 0.91109 0.93435 0.96928 1.21111 1.07174 1.02723 1.25305 0.92334 1.25009 0.95286 0.98530 0.95406 1.69960 1.10312 1.35743 1.37140 0.86615 0.77397 0.83028 0.80720 1.20052 1.21284 1.20211 1.46046 1.45288 1.10424 1.16066 1.22085 0.97096 0.91693 0.95815 1.22380 0.98837 0.98353 0.88355 1.21628 1.02802 0.92449 0.97485 1.21227 1.02472 0.96580 0.89716 0.87161 1.23425 0.77564 0.81608 0.84611 1.90664 1.34718 1.27099 1.86923 1.84553 1.70929 1.60361 1.16962 0.91894 0.90469 0.92595 0.92651 0.88370 0.91252 0.89292 0.95662 0.96844 0.92806 0.90189 0.89430 0.88679 0.89270 0.92816 0.89286 0.89779 0.73194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.40 37.16 0.31 -1.17 16 2 C -0.07 -0.63 2.42 -90.54 -0.22 -0.85 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.08 0.86 4.32 -3.84 -0.02 0.85 16 5 N -0.45 -5.33 3.98 -174.56 -0.70 -6.03 16 6 C 0.33 5.40 7.22 -318.87 -2.30 3.10 16 7 N -0.32 -6.30 11.24 30.32 0.34 -5.96 16 8 N -0.29 -6.35 12.18 32.99 0.40 -5.95 16 9 C 0.21 4.17 7.32 -154.01 -1.13 3.04 16 10 C -0.03 -0.62 5.53 -27.88 -0.15 -0.77 16 11 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 12 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 16 Si 0.89 20.97 29.54 -169.99 -5.02 15.94 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 20 N -0.48 -7.81 3.21 -121.46 -0.39 -8.20 16 21 C 0.08 0.88 9.28 59.84 0.56 1.44 16 22 C 0.05 0.46 5.28 -3.84 -0.02 0.44 16 23 C -0.11 -0.76 4.96 -26.65 -0.13 -0.89 16 24 C -0.08 -0.61 2.48 -91.65 -0.23 -0.84 16 25 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 26 C 0.49 3.86 7.33 36.00 0.26 4.12 16 27 O -0.51 -5.33 14.27 -18.75 -0.27 -5.60 16 28 O -0.52 -3.00 13.36 -39.27 -0.52 -3.53 16 29 H 0.06 0.60 6.01 -51.93 -0.31 0.29 16 30 H 0.08 0.79 5.33 -51.93 -0.28 0.51 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 1.20 7.92 -51.93 -0.41 0.79 16 34 H 0.07 1.23 7.26 -51.93 -0.38 0.85 16 35 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 40 H 0.09 0.79 7.64 -51.93 -0.40 0.39 16 41 H 0.09 1.05 7.24 -51.93 -0.38 0.67 16 42 H 0.09 0.82 5.20 -51.93 -0.27 0.55 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.61 6.58 -51.93 -0.34 0.27 16 46 H 0.41 0.77 9.10 45.56 0.41 1.19 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -34.76 365.80 -9.62 -44.38 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.09 Total: -1.34 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.62 Total: -3.76 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.39 Total: -51.61 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.79 Total: -9.12 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.76 -9.62 -44.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589406584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.618 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds