Wall clock time and date at job start Tue Mar 31 2020 14:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.50271 * 2 1 4 4 C 1.53040 * 109.49889 * 239.92371 * 2 1 3 5 5 N 1.46839 * 109.52428 * 299.23271 * 4 2 1 6 6 C 1.38586 * 111.00151 * 174.16094 * 5 4 2 7 7 N 1.31219 * 126.47145 * 359.97438 * 6 5 4 8 8 N 1.28520 * 109.86197 * 179.97438 * 7 6 5 9 9 C 1.30294 * 110.05432 * 359.97438 * 8 7 6 10 10 C 1.50703 * 126.34897 * 179.73745 * 9 8 7 11 11 C 1.53006 * 109.46790 * 90.02729 * 10 9 8 12 12 C 1.50703 * 109.46790 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00253 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99682 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00135 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00028 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46879 * 60.00143 * 16 14 12 18 18 H 1.48499 * 109.47176 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47120 * 300.00588 * 16 14 12 20 20 N 1.36449 * 126.47520 * 179.97438 * 6 5 4 21 21 C 1.46495 * 127.13819 * 0.02562 * 20 6 5 22 22 C 1.46839 * 111.20306 * 298.26404 * 5 4 2 23 23 C 1.53041 * 109.52637 * 61.74068 * 22 5 4 24 24 C 1.53116 * 109.50262 * 120.11839 * 2 1 3 25 25 H 1.09003 * 109.51846 * 182.18669 * 24 2 1 26 26 C 1.50691 * 109.52658 * 302.38005 * 24 2 1 27 27 O 1.20830 * 119.99914 * 0.02562 * 26 24 2 28 28 O 1.34234 * 120.00194 * 179.97438 * 26 24 2 29 29 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47077 * 300.07844 * 1 2 3 31 31 H 1.09001 * 109.47447 * 60.07833 * 1 2 3 32 32 H 1.09001 * 109.45926 * 179.22161 * 4 2 1 33 33 H 1.08992 * 109.45434 * 59.25382 * 4 2 1 34 34 H 1.09002 * 109.47223 * 210.02534 * 10 9 8 35 35 H 1.08997 * 109.47102 * 330.03308 * 10 9 8 36 36 H 1.08993 * 109.47343 * 299.99855 * 11 10 9 37 37 H 1.08997 * 109.46825 * 60.00410 * 11 10 9 38 38 H 0.97000 * 119.99844 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.47123 * 270.02226 * 21 20 6 40 40 H 1.09000 * 109.47410 * 30.01490 * 21 20 6 41 41 H 1.08997 * 109.47813 * 150.01870 * 21 20 6 42 42 H 1.09002 * 109.46519 * 181.75433 * 22 5 4 43 43 H 1.09006 * 109.46248 * 301.72537 * 22 5 4 44 44 H 1.08995 * 109.50594 * 180.88045 * 23 22 5 45 45 H 1.08998 * 109.50446 * 60.76114 * 23 22 5 46 46 H 0.96700 * 116.99911 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0408 -0.7230 -1.2484 5 7 1.5675 -2.1130 -1.2387 6 6 1.9021 -2.7598 -2.4178 7 7 2.5521 -2.2429 -3.4337 8 7 2.6891 -3.1246 -4.3587 9 6 2.1398 -4.2473 -3.9907 10 6 2.0829 -5.5200 -4.7957 11 6 3.3150 -6.3735 -4.4880 12 6 3.2579 -7.6465 -5.2926 13 1 2.4258 -7.8288 -5.9566 14 6 4.2678 -8.5784 -5.1810 15 7 5.2808 -8.3566 -4.3720 16 14 4.1967 -10.1567 -6.1777 17 1 4.1711 -9.8270 -7.6255 18 1 5.3926 -10.9849 -5.8792 19 1 2.9696 -10.9128 -5.8205 20 7 1.6178 -4.0545 -2.7416 21 6 0.9026 -5.0349 -1.9209 22 6 2.0845 -2.8419 -0.0736 23 6 1.5749 -2.1823 1.2099 24 6 2.0412 -0.7242 1.2485 25 1 3.1305 -0.6906 1.2686 26 6 1.4924 -0.0524 2.4806 27 8 0.7662 0.9073 2.3728 28 8 1.8094 -0.5207 3.6980 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 3.1307 -0.7105 -1.2548 33 1 1.6667 -0.2180 -2.1389 34 1 1.1820 -6.0752 -4.5346 35 1 2.0652 -5.2773 -5.8582 36 1 4.2159 -5.8184 -4.7491 37 1 3.3327 -6.6161 -3.4256 38 1 5.9911 -9.0125 -4.2933 39 1 1.6152 -5.5775 -1.2997 40 1 0.1836 -4.5200 -1.2837 41 1 0.3770 -5.7366 -2.5685 42 1 1.7422 -3.8761 -0.1109 43 1 3.1743 -2.8195 -0.0854 44 1 1.9715 -2.7141 2.0747 45 1 0.4856 -2.2166 1.2290 46 1 1.4330 -0.0569 4.4585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589406584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:25 Heat of formation + Delta-G solvation = -33.704535 kcal Electronic energy + Delta-G solvation = -27841.690897 eV Core-core repulsion = 23959.720427 eV Total energy + Delta-G solvation = -3881.970470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.01083 -41.84119 -39.97595 -37.19939 -36.39246 -36.00925 -35.10800 -33.39552 -32.89119 -30.20078 -28.77048 -28.19729 -27.15594 -26.55701 -24.20883 -23.46524 -23.07939 -22.09473 -21.42850 -19.75587 -18.99308 -18.72748 -18.43245 -17.60555 -17.46747 -17.12965 -16.69236 -16.46836 -16.00955 -15.68576 -15.36195 -15.05572 -14.89656 -14.70686 -14.40337 -14.33763 -14.15605 -13.86861 -13.64371 -13.22434 -12.97819 -12.82627 -12.73065 -12.66350 -12.60954 -12.50027 -12.43710 -12.04399 -12.00645 -11.86768 -11.72548 -11.55898 -11.39092 -11.30698 -11.11059 -11.05514 -10.67584 -10.54754 -9.24365 -8.19029 -6.31094 0.77999 1.20775 1.28235 1.44540 1.47526 1.54951 1.80712 2.09856 2.43306 2.58112 3.15352 3.39681 3.46180 3.55510 3.74514 3.85454 3.91687 4.03240 4.10318 4.16544 4.26468 4.29459 4.37390 4.48462 4.51018 4.60100 4.64772 4.69979 4.71758 4.76780 4.81311 4.88074 4.92737 5.01149 5.07571 5.19824 5.23232 5.43925 5.45596 5.49923 5.61456 5.67874 5.77135 5.80068 6.15482 6.20167 6.84763 7.04030 7.38915 7.77674 8.92740 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.002541 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.795851 B =11017.726891 C =11554.666364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.064 4.064 3 H 0.093 0.907 4 C 0.081 3.919 5 N -0.436 5.436 6 C 0.352 3.648 7 N -0.360 5.360 8 N -0.333 5.333 9 C 0.196 3.804 10 C -0.014 4.014 11 C 0.045 3.955 12 C -0.540 4.540 13 H 0.072 0.928 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.288 1.288 19 H -0.260 1.260 20 N -0.480 5.480 21 C 0.066 3.934 22 C 0.045 3.955 23 C -0.095 4.095 24 C -0.082 4.082 25 H 0.123 0.877 26 C 0.494 3.506 27 O -0.535 6.535 28 O -0.511 6.511 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.085 0.915 36 H -0.019 1.019 37 H -0.003 1.003 38 H 0.263 0.737 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.046 0.954 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.495 12.683 18.558 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 H 0.112 0.888 4 C -0.046 4.046 5 N -0.160 5.160 6 C -0.006 4.006 7 N -0.205 5.205 8 N -0.172 5.172 9 C -0.073 4.073 10 C -0.054 4.054 11 C 0.006 3.994 12 C -0.578 4.578 13 H 0.090 0.910 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.194 1.194 18 H -0.213 1.213 19 H -0.185 1.185 20 N -0.174 5.174 21 C -0.075 4.075 22 C -0.081 4.081 23 C -0.132 4.132 24 C -0.101 4.101 25 H 0.141 0.859 26 C 0.338 3.662 27 O -0.426 6.426 28 O -0.324 6.324 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.104 0.896 36 H -0.001 1.001 37 H 0.015 0.985 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.064 0.936 44 H 0.129 0.871 45 H 0.107 0.893 46 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -11.170 13.693 17.510 24.877 hybrid contribution 0.402 -1.209 0.506 1.371 sum -10.767 12.483 18.016 24.421 Atomic orbital electron populations 1.22015 0.93693 1.02530 1.02544 1.21033 0.97784 0.98960 0.90501 0.88850 1.22058 0.98495 0.84538 0.99514 1.58765 1.56628 1.03588 0.97067 1.22822 0.98097 0.83416 0.96227 1.74394 1.19839 1.25444 1.00827 1.73877 1.21137 0.98891 1.23269 1.25268 0.97856 0.98581 0.85580 1.20135 1.01013 0.86606 0.97647 1.18814 0.91611 0.93339 0.95589 1.21580 1.07522 1.03266 1.25386 0.90990 1.25969 0.94843 1.02320 0.96483 1.70109 1.11231 1.37108 1.38983 0.85481 0.77822 0.78566 0.79070 1.19400 1.21349 1.18489 1.46189 1.44918 1.11026 1.15302 1.22474 0.97596 0.91468 0.95944 1.22540 0.98521 0.98927 0.88161 1.21595 1.03081 0.91986 0.96587 1.21209 1.03205 0.96581 0.89081 0.85942 1.23289 0.76776 0.80954 0.85172 1.90668 1.36096 1.28415 1.87391 1.84504 1.70678 1.60274 1.16976 0.91866 0.90883 0.93293 0.93259 0.90031 0.88394 0.89618 1.00077 0.98457 0.92814 0.89478 0.86333 0.87791 0.88369 0.93572 0.87105 0.89273 0.71049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.40 71.98 0.60 -2.05 16 2 C -0.06 -1.05 2.42 -10.74 -0.03 -1.07 16 3 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.08 1.75 4.32 86.33 0.37 2.12 16 5 N -0.44 -9.95 3.98 -706.18 -2.81 -12.76 16 6 C 0.35 11.27 7.22 260.11 1.88 13.14 16 7 N -0.36 -14.44 11.24 -58.00 -0.65 -15.10 16 8 N -0.33 -14.88 12.18 -49.53 -0.60 -15.48 16 9 C 0.20 7.80 7.32 137.64 1.01 8.81 16 10 C -0.01 -0.58 5.53 29.85 0.17 -0.41 16 11 C 0.04 2.30 4.96 29.85 0.15 2.44 16 12 C -0.54 -29.14 9.11 25.60 0.23 -28.91 16 13 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 14 C 0.00 0.10 5.46 84.65 0.46 0.57 16 15 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 16 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 18 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 20 N -0.48 -15.17 3.21 -538.19 -1.73 -16.89 16 21 C 0.07 1.39 9.28 127.77 1.19 2.58 16 22 C 0.04 0.77 5.28 86.33 0.46 1.23 16 23 C -0.09 -1.07 4.96 30.65 0.15 -0.92 16 24 C -0.08 -1.04 2.48 -11.46 -0.03 -1.07 16 25 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 26 C 0.49 6.66 7.33 71.23 0.52 7.18 16 27 O -0.54 -10.35 14.27 21.95 0.31 -10.03 16 28 O -0.51 -4.37 13.36 -51.45 -0.69 -5.06 16 29 H 0.06 1.09 6.01 -2.39 -0.01 1.08 16 30 H 0.07 1.40 5.33 -2.39 -0.01 1.39 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.08 2.04 7.92 -2.39 -0.02 2.03 16 34 H 0.10 3.33 7.26 -2.39 -0.02 3.31 16 35 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 36 H -0.02 -1.15 8.14 -2.39 -0.02 -1.16 16 37 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.09 1.74 7.75 -2.39 -0.02 1.72 16 40 H 0.12 1.74 7.64 -2.39 -0.02 1.72 16 41 H 0.10 2.03 7.24 -2.39 -0.02 2.01 16 42 H 0.10 1.53 5.20 -2.39 -0.01 1.52 16 43 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 0.98 6.58 -2.39 -0.02 0.97 16 46 H 0.43 0.35 9.10 -74.06 -0.67 -0.32 16 Total: -1.00 -77.27 365.80 3.61 -73.66 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.33 Total: 8.93 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 7.13 Total: 3.63 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -5.51 Total: -115.80 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.37 Total: -15.09 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -77.27 3.61 -73.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589406584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.954 kcal (2) G-P(sol) polarization free energy of solvation -77.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds