Wall clock time and date at job start Tue Mar 31 2020 14:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.50087 * 2 1 4 4 C 1.53037 * 109.53340 * 120.09842 * 2 1 3 5 5 N 1.46847 * 109.51946 * 179.13783 * 4 2 1 6 6 C 1.38579 * 110.99774 * 174.16163 * 5 4 2 7 7 N 1.31218 * 126.47268 * 62.14809 * 6 5 4 8 8 N 1.28530 * 109.85898 * 179.97438 * 7 6 5 9 9 C 1.30297 * 110.05251 * 359.97438 * 8 7 6 10 10 C 1.50703 * 126.34229 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47069 * 89.97940 * 10 9 8 12 12 C 1.50693 * 109.47097 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00092 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99966 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00245 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00018 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46837 * 90.00410 * 16 14 12 18 18 H 1.48500 * 109.47179 * 209.99952 * 16 14 12 19 19 H 1.48491 * 109.47264 * 330.00539 * 16 14 12 20 20 N 1.36449 * 126.47232 * 241.82582 * 6 5 4 21 21 C 1.46504 * 127.13705 * 0.04818 * 20 6 5 22 22 C 1.46850 * 111.23551 * 298.28012 * 5 4 2 23 23 C 1.53038 * 109.52158 * 61.67765 * 22 5 4 24 24 C 1.53114 * 109.50018 * 239.92390 * 2 1 3 25 25 H 1.09002 * 109.52606 * 302.27035 * 24 2 1 26 26 C 1.50701 * 109.57898 * 62.42627 * 24 2 1 27 27 O 1.20832 * 119.99984 * 359.71921 * 26 24 2 28 28 O 1.34225 * 120.00385 * 179.70900 * 26 24 2 29 29 H 1.08994 * 109.47465 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47138 * 300.07867 * 1 2 3 31 31 H 1.08999 * 109.47309 * 60.07364 * 1 2 3 32 32 H 1.08998 * 109.46654 * 299.15660 * 4 2 1 33 33 H 1.08999 * 109.45902 * 59.13565 * 4 2 1 34 34 H 1.08999 * 109.46842 * 209.97666 * 10 9 8 35 35 H 1.09001 * 109.47075 * 329.97849 * 10 9 8 36 36 H 1.08999 * 109.47065 * 299.99590 * 11 10 9 37 37 H 1.09004 * 109.46994 * 59.99567 * 11 10 9 38 38 H 0.96996 * 120.00769 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.47347 * 94.73056 * 21 20 6 40 40 H 1.09006 * 109.46780 * 214.72603 * 21 20 6 41 41 H 1.08993 * 109.46743 * 334.72094 * 21 20 6 42 42 H 1.09001 * 109.42625 * 301.69177 * 22 5 4 43 43 H 1.08999 * 109.50113 * 181.71863 * 22 5 4 44 44 H 1.08994 * 109.50120 * 180.91996 * 23 22 5 45 45 H 1.09007 * 109.49821 * 60.84948 * 23 22 5 46 46 H 0.96697 * 117.00631 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0417 -0.7233 1.2478 5 7 3.5100 -0.7412 1.2371 6 6 4.0088 -1.2729 2.4157 7 7 3.8165 -2.4907 2.8648 8 7 4.4250 -2.6435 3.9866 9 6 5.0369 -1.5415 4.3167 10 6 5.8604 -1.3148 5.5583 11 6 7.3185 -1.6835 5.2775 12 6 8.1421 -1.4562 6.5188 13 1 7.6725 -1.0861 7.4182 14 6 9.4952 -1.7206 6.5064 15 7 10.2140 -1.5227 7.5898 16 14 10.3074 -2.3613 4.9510 17 1 10.7759 -1.2163 4.1295 18 1 11.4657 -3.2168 5.3138 19 1 9.3265 -3.1599 4.1733 20 7 4.7976 -0.6308 3.3252 21 6 5.2846 0.7492 3.2556 22 6 4.0246 -1.4710 0.0714 23 6 3.5711 -0.7706 -1.2115 24 6 2.0411 -0.7233 -1.2490 25 1 1.6457 -1.7389 -1.2693 26 6 1.5902 0.0173 -2.4815 27 8 0.9230 1.0190 -2.3742 28 8 1.9298 -0.4356 -3.6986 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5150 0.8892 31 1 -0.3634 0.5127 -0.8906 32 1 1.6913 -0.2025 2.1389 33 1 1.6662 -1.7465 1.2540 34 1 5.8002 -0.2656 5.8475 35 1 5.4774 -1.9372 6.3670 36 1 7.3787 -2.7327 4.9882 37 1 7.7014 -1.0611 4.4687 38 1 11.1658 -1.7090 7.5813 39 1 4.6101 1.4010 3.8109 40 1 6.2828 0.8046 3.6900 41 1 5.3233 1.0687 2.2143 42 1 3.6402 -2.4909 0.0836 43 1 5.1138 -1.4931 0.1076 44 1 3.9395 -1.3218 -2.0767 45 1 3.9672 0.2447 -1.2313 46 1 1.6176 0.0733 -4.4593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589406585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:28 Heat of formation + Delta-G solvation = -17.704447 kcal Electronic energy + Delta-G solvation = -27650.779272 eV Core-core repulsion = 23769.502618 eV Total energy + Delta-G solvation = -3881.276654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.75989 -41.12397 -39.09306 -36.64433 -34.96670 -34.87296 -33.73311 -32.58966 -31.79170 -28.99640 -27.57257 -27.35598 -26.01006 -25.28253 -22.69611 -22.56032 -21.60666 -20.78341 -20.22222 -19.80417 -18.44951 -17.44649 -17.14697 -16.75516 -16.37557 -16.16899 -15.87692 -15.23571 -14.66729 -14.40536 -14.18221 -14.14317 -13.78187 -13.61181 -13.36081 -13.19454 -12.92676 -12.74054 -12.57255 -12.38468 -12.37392 -12.00525 -11.86927 -11.62958 -11.40346 -11.30464 -11.25025 -11.11586 -10.91131 -10.58089 -10.53812 -10.32310 -10.13491 -9.88921 -9.84718 -9.32773 -8.94799 -8.63173 -8.60693 -6.12483 -4.12218 1.77111 1.91982 2.36240 2.58252 3.09246 3.24770 3.34294 3.39626 3.57003 4.02835 4.21346 4.38630 4.44682 4.62301 4.76174 4.88042 4.88896 4.90572 4.95259 5.11375 5.19725 5.20462 5.22219 5.23552 5.28699 5.34416 5.42396 5.49904 5.54324 5.59972 5.69169 5.72875 5.86677 5.94150 6.14950 6.16950 6.18892 6.25684 6.45911 6.48024 6.77281 7.07875 7.23915 7.31951 7.47449 7.66143 8.41435 8.90660 8.99633 9.49035 11.00364 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023937 B = 0.002651 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.459307 B =10558.147524 C =11082.864181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.070 4.070 3 H 0.091 0.909 4 C 0.074 3.926 5 N -0.462 5.462 6 C 0.318 3.682 7 N -0.311 5.311 8 N -0.296 5.296 9 C 0.212 3.788 10 C -0.023 4.023 11 C -0.004 4.004 12 C -0.524 4.524 13 H 0.076 0.924 14 C 0.071 3.929 15 N -0.899 5.899 16 Si 0.876 3.124 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.265 1.265 20 N -0.466 5.466 21 C 0.078 3.922 22 C 0.067 3.933 23 C -0.106 4.106 24 C -0.079 4.079 25 H 0.111 0.889 26 C 0.486 3.514 27 O -0.509 6.509 28 O -0.516 6.516 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.025 0.975 37 H 0.009 0.991 38 H 0.265 0.735 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.522 5.665 -21.481 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.089 4.089 3 H 0.109 0.891 4 C -0.053 4.053 5 N -0.188 5.188 6 C -0.038 4.038 7 N -0.155 5.155 8 N -0.136 5.136 9 C -0.055 4.055 10 C -0.063 4.063 11 C -0.042 4.042 12 C -0.562 4.562 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.703 3.297 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.189 1.189 20 N -0.158 5.158 21 C -0.065 4.065 22 C -0.060 4.060 23 C -0.144 4.144 24 C -0.098 4.098 25 H 0.129 0.871 26 C 0.328 3.672 27 O -0.397 6.397 28 O -0.328 6.328 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.044 0.956 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -17.710 4.787 -21.007 27.890 hybrid contribution 0.618 0.684 -1.350 1.635 sum -17.092 5.472 -22.357 28.669 Atomic orbital electron populations 1.21996 0.93676 1.02146 1.03712 1.21072 0.96417 1.00387 0.91012 0.89112 1.22191 0.84022 1.00701 0.98380 1.58480 1.09439 1.52971 0.97899 1.22056 0.99408 0.89465 0.92865 1.74493 1.20576 1.13529 1.06906 1.74069 1.11377 1.20611 1.07507 1.25678 1.00170 0.85612 0.94039 1.20257 0.94887 1.02631 0.88537 1.19545 0.89747 0.97116 0.97804 1.21004 0.92855 1.44985 0.97309 0.90567 1.24964 0.97314 0.94763 0.96017 1.69892 1.07184 1.48777 1.27844 0.86833 0.79352 0.79474 0.84031 1.20333 1.21140 1.18947 1.46243 1.38357 1.13614 1.17622 1.22053 1.01436 0.78319 1.04672 1.22135 1.00789 0.95855 0.87223 1.21620 0.91950 1.02942 0.97857 1.21239 0.98257 1.00817 0.89514 0.87095 1.23436 0.76112 0.82970 0.84657 1.90691 1.36404 1.25487 1.87112 1.84547 1.73346 1.57911 1.16965 0.92767 0.92024 0.90304 0.89879 0.92486 0.90482 0.88584 0.95634 0.97315 0.92560 0.90380 0.88632 0.88942 0.92327 0.89732 0.89253 0.90197 0.73169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 8.91 37.16 0.33 -0.88 16 2 C -0.07 -0.57 2.02 -90.54 -0.18 -0.75 16 3 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 4 C 0.07 0.73 4.67 -3.83 -0.02 0.72 16 5 N -0.46 -5.29 4.65 -174.55 -0.81 -6.10 16 6 C 0.32 4.86 6.41 -318.88 -2.04 2.81 16 7 N -0.31 -5.70 12.19 30.31 0.37 -5.33 16 8 N -0.30 -6.00 12.18 32.99 0.40 -5.60 16 9 C 0.21 3.92 7.32 -154.02 -1.13 2.79 16 10 C -0.02 -0.44 5.45 -27.88 -0.15 -0.60 16 11 C 0.00 -0.08 4.02 -27.89 -0.11 -0.19 16 12 C -0.52 -14.25 9.66 -34.44 -0.33 -14.58 16 13 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 15 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 16 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 20 N -0.47 -7.22 3.21 -121.46 -0.39 -7.61 16 21 C 0.08 0.90 10.89 59.85 0.65 1.55 16 22 C 0.07 0.66 5.38 -3.83 -0.02 0.64 16 23 C -0.11 -0.76 5.30 -26.65 -0.14 -0.90 16 24 C -0.08 -0.57 2.20 -91.65 -0.20 -0.77 16 25 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 26 C 0.49 3.73 7.35 36.01 0.26 3.99 16 27 O -0.51 -5.22 14.58 -18.75 -0.27 -5.50 16 28 O -0.52 -2.88 13.35 -39.25 -0.52 -3.40 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.69 5.73 -51.93 -0.30 0.40 16 32 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.32 7.98 -51.93 -0.41 0.91 16 35 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 36 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 37 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 41 H 0.09 0.90 8.12 -51.93 -0.42 0.48 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.90 8.10 -51.93 -0.42 0.47 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.41 0.68 9.10 45.56 0.41 1.10 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -34.60 375.00 -9.21 -43.81 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.55 Total: -2.23 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -3.18 Total: -4.24 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.34 Total: -50.81 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.80 Total: -8.90 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.60 -9.21 -43.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589406585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.108 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds