Wall clock time and date at job start Tue Mar 31 2020 14:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.50087 * 2 1 4 4 C 1.53037 * 109.53340 * 120.09842 * 2 1 3 5 5 N 1.46847 * 109.51946 * 179.13783 * 4 2 1 6 6 C 1.38579 * 110.99774 * 174.16163 * 5 4 2 7 7 N 1.31218 * 126.47268 * 62.14809 * 6 5 4 8 8 N 1.28530 * 109.85898 * 179.97438 * 7 6 5 9 9 C 1.30297 * 110.05251 * 359.97438 * 8 7 6 10 10 C 1.50703 * 126.34229 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47069 * 89.97940 * 10 9 8 12 12 C 1.50693 * 109.47097 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00092 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99966 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00245 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00018 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46837 * 90.00410 * 16 14 12 18 18 H 1.48500 * 109.47179 * 209.99952 * 16 14 12 19 19 H 1.48491 * 109.47264 * 330.00539 * 16 14 12 20 20 N 1.36449 * 126.47232 * 241.82582 * 6 5 4 21 21 C 1.46504 * 127.13705 * 0.04818 * 20 6 5 22 22 C 1.46850 * 111.23551 * 298.28012 * 5 4 2 23 23 C 1.53038 * 109.52158 * 61.67765 * 22 5 4 24 24 C 1.53114 * 109.50018 * 239.92390 * 2 1 3 25 25 H 1.09002 * 109.52606 * 302.27035 * 24 2 1 26 26 C 1.50701 * 109.57898 * 62.42627 * 24 2 1 27 27 O 1.20832 * 119.99984 * 359.71921 * 26 24 2 28 28 O 1.34225 * 120.00385 * 179.70900 * 26 24 2 29 29 H 1.08994 * 109.47465 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47138 * 300.07867 * 1 2 3 31 31 H 1.08999 * 109.47309 * 60.07364 * 1 2 3 32 32 H 1.08998 * 109.46654 * 299.15660 * 4 2 1 33 33 H 1.08999 * 109.45902 * 59.13565 * 4 2 1 34 34 H 1.08999 * 109.46842 * 209.97666 * 10 9 8 35 35 H 1.09001 * 109.47075 * 329.97849 * 10 9 8 36 36 H 1.08999 * 109.47065 * 299.99590 * 11 10 9 37 37 H 1.09004 * 109.46994 * 59.99567 * 11 10 9 38 38 H 0.96996 * 120.00769 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.47347 * 94.73056 * 21 20 6 40 40 H 1.09006 * 109.46780 * 214.72603 * 21 20 6 41 41 H 1.08993 * 109.46743 * 334.72094 * 21 20 6 42 42 H 1.09001 * 109.42625 * 301.69177 * 22 5 4 43 43 H 1.08999 * 109.50113 * 181.71863 * 22 5 4 44 44 H 1.08994 * 109.50120 * 180.91996 * 23 22 5 45 45 H 1.09007 * 109.49821 * 60.84948 * 23 22 5 46 46 H 0.96697 * 117.00631 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0417 -0.7233 1.2478 5 7 3.5100 -0.7412 1.2371 6 6 4.0088 -1.2729 2.4157 7 7 3.8165 -2.4907 2.8648 8 7 4.4250 -2.6435 3.9866 9 6 5.0369 -1.5415 4.3167 10 6 5.8604 -1.3148 5.5583 11 6 7.3185 -1.6835 5.2775 12 6 8.1421 -1.4562 6.5188 13 1 7.6725 -1.0861 7.4182 14 6 9.4952 -1.7206 6.5064 15 7 10.2140 -1.5227 7.5898 16 14 10.3074 -2.3613 4.9510 17 1 10.7759 -1.2163 4.1295 18 1 11.4657 -3.2168 5.3138 19 1 9.3265 -3.1599 4.1733 20 7 4.7976 -0.6308 3.3252 21 6 5.2846 0.7492 3.2556 22 6 4.0246 -1.4710 0.0714 23 6 3.5711 -0.7706 -1.2115 24 6 2.0411 -0.7233 -1.2490 25 1 1.6457 -1.7389 -1.2693 26 6 1.5902 0.0173 -2.4815 27 8 0.9230 1.0190 -2.3742 28 8 1.9298 -0.4356 -3.6986 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5150 0.8892 31 1 -0.3634 0.5127 -0.8906 32 1 1.6913 -0.2025 2.1389 33 1 1.6662 -1.7465 1.2540 34 1 5.8002 -0.2656 5.8475 35 1 5.4774 -1.9372 6.3670 36 1 7.3787 -2.7327 4.9882 37 1 7.7014 -1.0611 4.4687 38 1 11.1658 -1.7090 7.5813 39 1 4.6101 1.4010 3.8109 40 1 6.2828 0.8046 3.6900 41 1 5.3233 1.0687 2.2143 42 1 3.6402 -2.4909 0.0836 43 1 5.1138 -1.4931 0.1076 44 1 3.9395 -1.3218 -2.0767 45 1 3.9672 0.2447 -1.2313 46 1 1.6176 0.0733 -4.4593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589406585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:27 Heat of formation + Delta-G solvation = -39.234626 kcal Electronic energy + Delta-G solvation = -27651.712891 eV Core-core repulsion = 23769.502618 eV Total energy + Delta-G solvation = -3882.210273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.04850 -41.74590 -39.85739 -37.19753 -36.42512 -35.89989 -35.19138 -33.72171 -33.20007 -30.47755 -28.57164 -28.12030 -27.39927 -26.48084 -23.55883 -23.34518 -23.13483 -21.80255 -21.58519 -20.62082 -19.05773 -19.00070 -18.25428 -17.79048 -17.48118 -17.18498 -16.66332 -16.35991 -16.02521 -15.55858 -15.25317 -15.09104 -14.86037 -14.74544 -14.65119 -14.28187 -14.23049 -13.71587 -13.57729 -13.38068 -13.06495 -13.02859 -12.97251 -12.80646 -12.65236 -12.45109 -12.25227 -12.05163 -11.96538 -11.92585 -11.81691 -11.57321 -11.52130 -11.41494 -11.19664 -11.07495 -10.77709 -10.01631 -9.94826 -8.30095 -6.34176 0.66731 1.20125 1.23285 1.32075 1.37292 1.47636 1.71554 2.09705 2.34119 2.59696 3.05209 3.39030 3.42502 3.57647 3.75397 3.83801 3.93093 4.06639 4.12318 4.20886 4.30479 4.36246 4.36697 4.52121 4.52876 4.56965 4.61112 4.63425 4.67929 4.71730 4.73612 4.79125 4.87928 5.02167 5.05826 5.11139 5.26743 5.27335 5.29728 5.41466 5.49178 5.62690 5.63331 5.70937 6.17557 6.24352 6.73206 7.02851 7.30528 7.65590 8.85887 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023937 B = 0.002651 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.459307 B =10558.147524 C =11082.864181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.060 4.060 3 H 0.084 0.916 4 C 0.078 3.922 5 N -0.456 5.456 6 C 0.338 3.662 7 N -0.341 5.341 8 N -0.330 5.330 9 C 0.200 3.800 10 C -0.011 4.011 11 C 0.005 3.995 12 C -0.527 4.527 13 H 0.047 0.953 14 C 0.014 3.986 15 N -0.944 5.944 16 Si 0.940 3.060 17 H -0.260 1.260 18 H -0.284 1.284 19 H -0.261 1.261 20 N -0.463 5.463 21 C 0.071 3.929 22 C 0.066 3.934 23 C -0.093 4.093 24 C -0.079 4.079 25 H 0.123 0.877 26 C 0.494 3.506 27 O -0.538 6.538 28 O -0.511 6.511 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.009 0.991 37 H 0.020 0.980 38 H 0.267 0.733 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.049 6.412 -24.434 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 H 0.103 0.897 4 C -0.049 4.049 5 N -0.182 5.182 6 C -0.019 4.019 7 N -0.186 5.186 8 N -0.170 5.170 9 C -0.069 4.069 10 C -0.051 4.051 11 C -0.033 4.033 12 C -0.565 4.565 13 H 0.066 0.934 14 C -0.184 4.184 15 N -0.584 5.584 16 Si 0.764 3.236 17 H -0.185 1.185 18 H -0.210 1.210 19 H -0.186 1.186 20 N -0.155 5.155 21 C -0.070 4.070 22 C -0.061 4.061 23 C -0.131 4.131 24 C -0.098 4.098 25 H 0.141 0.859 26 C 0.338 3.662 27 O -0.428 6.428 28 O -0.325 6.325 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.028 0.972 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.131 0.869 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.126 0.874 45 H 0.101 0.899 46 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -18.246 5.551 -23.994 30.651 hybrid contribution 0.701 0.492 -0.466 0.975 sum -17.545 6.043 -24.461 30.703 Atomic orbital electron populations 1.21948 0.93280 1.02534 1.03369 1.20947 0.96590 0.99783 0.90573 0.89726 1.22200 0.82916 1.00563 0.99247 1.58772 1.10265 1.52375 0.96836 1.22452 0.97683 0.88584 0.93203 1.74423 1.21822 1.15428 1.06879 1.73969 1.12369 1.21970 1.08686 1.25290 1.00852 0.86218 0.94523 1.19973 0.92568 1.03598 0.88942 1.19372 0.91719 0.96259 0.95991 1.21305 0.93341 1.43892 0.97939 0.93426 1.25821 0.98166 0.95207 0.99188 1.70026 1.07676 1.50545 1.30171 0.85809 0.78222 0.79337 0.80188 1.18517 1.20952 1.18578 1.46420 1.37859 1.14568 1.16665 1.22374 1.01693 0.76480 1.06477 1.22210 1.00444 0.95829 0.87594 1.21546 0.91792 1.02982 0.96797 1.21226 0.98278 1.01247 0.89084 0.85928 1.23343 0.75410 0.82272 0.85224 1.90695 1.37818 1.26745 1.87577 1.84501 1.72949 1.58014 1.17026 0.92028 0.91872 0.91105 0.90424 0.93060 0.88522 0.89408 0.97245 0.96129 0.92373 0.88238 0.88908 0.86874 0.92965 0.90341 0.87434 0.89937 0.71071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.91 71.98 0.64 -1.48 16 2 C -0.06 -0.85 2.02 -10.74 -0.02 -0.88 16 3 H 0.08 1.36 8.05 -2.39 -0.02 1.34 16 4 C 0.08 1.41 4.67 86.33 0.40 1.81 16 5 N -0.46 -9.57 4.65 -706.15 -3.28 -12.85 16 6 C 0.34 9.86 6.41 260.11 1.67 11.53 16 7 N -0.34 -12.37 12.19 -58.01 -0.71 -13.08 16 8 N -0.33 -13.38 12.18 -49.54 -0.60 -13.98 16 9 C 0.20 7.26 7.32 137.64 1.01 8.27 16 10 C -0.01 -0.42 5.45 29.85 0.16 -0.25 16 11 C 0.01 0.24 4.02 29.85 0.12 0.36 16 12 C -0.53 -29.00 9.66 25.60 0.25 -28.75 16 13 H 0.05 2.82 7.99 -2.91 -0.02 2.80 16 14 C 0.01 0.80 5.47 84.66 0.46 1.26 16 15 N -0.94 -57.52 13.96 21.45 0.30 -57.23 16 16 Si 0.94 43.81 27.47 68.60 1.88 45.69 16 17 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.26 -11.95 6.54 99.48 0.65 -11.29 16 20 N -0.46 -13.62 3.21 -538.18 -1.73 -15.35 16 21 C 0.07 1.44 10.89 127.77 1.39 2.84 16 22 C 0.07 1.16 5.38 86.33 0.46 1.63 16 23 C -0.09 -1.07 5.30 30.65 0.16 -0.90 16 24 C -0.08 -0.94 2.20 -11.46 -0.03 -0.96 16 25 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 26 C 0.49 6.35 7.35 71.24 0.52 6.87 16 27 O -0.54 -10.04 14.58 21.95 0.32 -9.72 16 28 O -0.51 -4.17 13.35 -51.37 -0.69 -4.85 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.14 5.73 -2.39 -0.01 1.13 16 32 H 0.08 1.51 8.10 -2.39 -0.02 1.49 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 3.22 7.98 -2.39 -0.02 3.20 16 35 H 0.09 3.43 8.14 -2.39 -0.02 3.42 16 36 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 37 H 0.02 0.89 7.57 -2.38 -0.02 0.87 16 38 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 40 H 0.09 1.98 8.05 -2.38 -0.02 1.96 16 41 H 0.11 1.84 8.12 -2.39 -0.02 1.82 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 44 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.43 0.19 9.10 -74.06 -0.67 -0.48 16 Total: -1.00 -75.22 375.00 2.96 -72.26 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.26 Total: 7.77 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 7.21 Total: 1.33 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -6.02 Total: -112.48 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.37 Total: -14.57 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -75.22 2.96 -72.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589406585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.026 kcal (2) G-P(sol) polarization free energy of solvation -75.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds