Wall clock time and date at job start Tue Mar 31 2020 14:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.50944 * 2 1 4 4 C 1.53036 * 109.50337 * 120.08335 * 2 1 3 5 5 N 1.46849 * 109.52274 * 60.75309 * 4 2 1 6 6 C 1.38579 * 110.99729 * 185.83981 * 5 4 2 7 7 N 1.31215 * 126.47464 * 359.43809 * 6 5 4 8 8 N 1.28533 * 109.86352 * 179.81887 * 7 6 5 9 9 C 1.30301 * 110.05121 * 0.45384 * 8 7 6 10 10 C 1.50694 * 126.34809 * 179.76429 * 9 8 7 11 11 C 1.52999 * 109.46893 * 269.95198 * 10 9 8 12 12 C 1.50704 * 109.46911 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00215 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99817 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00155 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00389 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46944 * 89.99798 * 16 14 12 18 18 H 1.48496 * 109.47435 * 210.00146 * 16 14 12 19 19 H 1.48505 * 109.46813 * 330.00472 * 16 14 12 20 20 N 1.36459 * 126.46945 * 179.74450 * 6 5 4 21 21 C 1.46490 * 127.13851 * 0.02562 * 20 6 5 22 22 C 1.46842 * 111.20050 * 61.74759 * 5 4 2 23 23 C 1.53039 * 109.52266 * 298.25785 * 22 5 4 24 24 C 1.53123 * 109.31189 * 59.15550 * 23 22 5 25 25 H 1.09000 * 109.52057 * 62.27355 * 24 23 22 26 26 C 1.50697 * 109.52399 * 182.46470 * 24 23 22 27 27 O 1.20821 * 120.00200 * 120.00058 * 26 24 23 28 28 O 1.34227 * 119.99776 * 299.99879 * 26 24 23 29 29 H 1.09001 * 109.46859 * 299.92608 * 1 2 3 30 30 H 1.09004 * 109.46868 * 59.91353 * 1 2 3 31 31 H 1.08995 * 109.48081 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.45883 * 300.74199 * 4 2 1 33 33 H 1.08995 * 109.46584 * 180.77272 * 4 2 1 34 34 H 1.08997 * 109.47061 * 29.95586 * 10 9 8 35 35 H 1.09003 * 109.47401 * 149.95648 * 10 9 8 36 36 H 1.08997 * 109.47583 * 300.00068 * 11 10 9 37 37 H 1.09000 * 109.46997 * 60.00489 * 11 10 9 38 38 H 0.96999 * 120.00449 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.47509 * 90.00285 * 21 20 6 40 40 H 1.09007 * 109.47275 * 209.99879 * 21 20 6 41 41 H 1.08999 * 109.47518 * 329.99971 * 21 20 6 42 42 H 1.08995 * 109.46659 * 178.23678 * 22 5 4 43 43 H 1.09009 * 109.46400 * 58.26507 * 22 5 4 44 44 H 1.09002 * 109.50563 * 179.11883 * 23 22 5 45 45 H 1.09003 * 109.50107 * 299.19864 * 23 22 5 46 46 H 0.96702 * 117.00270 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0409 -0.7231 1.2482 5 7 1.5673 -2.1131 1.2385 6 6 1.9020 -2.7600 2.4175 7 7 2.5616 -2.2464 3.4289 8 7 2.6917 -3.1258 4.3572 9 6 2.1358 -4.2463 3.9922 10 6 2.0788 -5.5189 4.7972 11 6 3.3054 -6.3773 4.4817 12 6 3.2488 -7.6497 5.2873 13 1 2.4206 -7.8285 5.9569 14 6 4.2543 -8.5856 5.1693 15 7 4.2052 -9.6958 5.8727 16 14 5.6866 -8.2768 4.0106 17 1 6.7697 -7.5695 4.7399 18 1 6.1987 -9.5737 3.4999 19 1 5.2299 -7.4414 2.8708 20 7 1.6129 -4.0531 2.7435 21 6 0.8924 -5.0315 1.9252 22 6 2.0843 -2.8421 0.0734 23 6 1.5747 -2.1823 -1.2100 24 6 2.0403 -0.7241 -1.2491 25 1 3.1296 -0.6899 -1.2697 26 6 1.4906 -0.0527 -2.4812 27 8 0.7691 0.9104 -2.3734 28 8 1.8028 -0.5246 -3.6984 29 1 -0.3633 0.5127 0.8907 30 1 -0.3633 0.5152 -0.8893 31 1 -0.3635 -1.0276 -0.0005 32 1 1.6669 -0.2182 2.1390 33 1 3.1308 -0.7108 1.2546 34 1 2.0685 -5.2765 5.8598 35 1 1.1740 -6.0705 4.5416 36 1 3.3157 -6.6197 3.4191 37 1 4.2102 -5.8259 4.7374 38 1 4.9124 -10.3544 5.7895 39 1 1.6016 -5.5783 1.3038 40 1 0.3646 -5.7301 2.5747 41 1 0.1746 -4.5145 1.2884 42 1 1.7419 -3.8762 0.1107 43 1 3.1741 -2.8198 0.0851 44 1 1.9713 -2.7142 -2.0749 45 1 0.4854 -2.2171 -1.2294 46 1 1.4260 -0.0611 -4.4588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589406586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:31 Heat of formation + Delta-G solvation = -9.237658 kcal Electronic energy + Delta-G solvation = -27945.152909 eV Core-core repulsion = 24064.243403 eV Total energy + Delta-G solvation = -3880.909506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.77555 -41.22128 -39.23935 -36.66689 -35.09592 -34.88127 -33.65114 -32.20780 -31.78870 -29.01996 -27.86245 -27.37226 -25.90947 -25.41807 -23.31547 -22.40410 -21.51203 -21.07282 -20.03408 -19.05093 -18.46166 -17.70791 -17.02109 -16.86479 -16.44322 -16.07124 -15.91604 -15.14381 -14.88366 -14.61607 -14.30728 -14.11543 -13.86562 -13.61854 -13.33305 -13.28209 -13.14933 -12.82939 -12.63541 -12.35043 -12.02083 -11.96150 -11.84774 -11.62110 -11.42535 -11.24323 -11.18213 -11.08685 -10.87701 -10.50398 -10.42594 -10.33711 -10.12603 -9.91335 -9.88917 -9.51511 -9.32901 -8.62079 -8.04900 -6.12802 -4.12357 1.75184 1.97192 2.38680 2.56733 3.11685 3.25868 3.33326 3.35538 3.54952 4.02469 4.12759 4.37744 4.39369 4.57229 4.69627 4.81868 4.82596 4.86963 4.90318 5.06173 5.07745 5.13428 5.17085 5.21258 5.29278 5.37547 5.41734 5.47742 5.51375 5.58234 5.70708 5.82273 5.89308 6.05134 6.06362 6.18846 6.27051 6.31148 6.46222 6.55337 6.77590 7.09906 7.22382 7.29602 7.46671 7.66115 8.41420 8.90552 9.07783 9.48810 11.00114 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.002816 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.525593 B = 9939.284289 C =10553.249675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.072 4.072 3 H 0.090 0.910 4 C 0.079 3.921 5 N -0.445 5.445 6 C 0.336 3.664 7 N -0.323 5.323 8 N -0.293 5.293 9 C 0.207 3.793 10 C -0.022 4.022 11 C -0.003 4.003 12 C -0.523 4.523 13 H 0.076 0.924 14 C 0.071 3.929 15 N -0.899 5.899 16 Si 0.878 3.122 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.269 1.269 20 N -0.483 5.483 21 C 0.075 3.925 22 C 0.048 3.952 23 C -0.106 4.106 24 C -0.081 4.081 25 H 0.110 0.890 26 C 0.485 3.515 27 O -0.506 6.506 28 O -0.516 6.516 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.012 0.988 37 H 0.020 0.980 38 H 0.264 0.736 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.775 16.873 -20.318 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.091 4.091 3 H 0.108 0.892 4 C -0.048 4.048 5 N -0.169 5.169 6 C -0.020 4.020 7 N -0.167 5.167 8 N -0.131 5.131 9 C -0.060 4.060 10 C -0.061 4.061 11 C -0.042 4.042 12 C -0.561 4.561 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.706 3.294 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.194 1.194 20 N -0.179 5.179 21 C -0.069 4.069 22 C -0.079 4.079 23 C -0.144 4.144 24 C -0.100 4.100 25 H 0.128 0.872 26 C 0.328 3.672 27 O -0.393 6.393 28 O -0.328 6.328 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.031 0.969 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -7.487 17.787 -19.130 27.174 hybrid contribution 0.656 -0.650 -1.914 2.125 sum -6.832 17.137 -21.044 27.985 Atomic orbital electron populations 1.22087 0.93416 1.02757 1.03167 1.21139 0.98207 0.98928 0.90848 0.89172 1.22075 0.98858 0.84953 0.98949 1.58587 1.57175 1.03288 0.97874 1.22428 1.00084 0.83619 0.95884 1.74518 1.17470 1.24939 0.99801 1.74012 1.20005 0.97743 1.21320 1.25559 0.97116 0.99256 0.84107 1.20222 1.01571 0.86326 0.98014 1.19536 0.92665 0.95093 0.96878 1.21015 1.09299 1.00642 1.25151 0.90576 1.24966 0.97832 0.94877 0.95403 1.69899 1.33992 1.08888 1.40964 0.86806 0.83244 0.77505 0.81858 1.20048 1.21290 1.19407 1.46074 1.45105 1.10585 1.16087 1.22115 0.97036 0.91775 0.95927 1.22379 0.98753 0.98353 0.88413 1.21629 1.02877 0.92482 0.97407 1.21223 1.02434 0.96557 0.89774 0.87195 1.23400 0.77545 0.81671 0.84607 1.90666 1.34838 1.26917 1.86912 1.84547 1.71064 1.60237 1.16981 0.92552 0.90457 0.91888 0.88324 0.92648 0.88687 0.90619 0.96924 0.96135 0.92573 0.90272 0.88464 0.89269 0.89290 0.92892 0.89276 0.89715 0.73142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 8.40 37.16 0.31 -1.10 16 2 C -0.07 -0.60 2.42 -90.54 -0.22 -0.82 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.08 0.81 4.32 -3.83 -0.02 0.79 16 5 N -0.45 -5.01 3.98 -174.55 -0.70 -5.70 16 6 C 0.34 5.13 7.21 -318.87 -2.30 2.83 16 7 N -0.32 -5.98 11.25 30.32 0.34 -5.64 16 8 N -0.29 -6.00 12.18 32.99 0.40 -5.59 16 9 C 0.21 3.84 7.32 -154.00 -1.13 2.71 16 10 C -0.02 -0.41 5.53 -27.89 -0.15 -0.57 16 11 C 0.00 -0.07 4.02 -27.88 -0.11 -0.18 16 12 C -0.52 -14.23 9.66 -34.44 -0.33 -14.56 16 13 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 16 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 20 N -0.48 -7.35 3.21 -121.46 -0.39 -7.74 16 21 C 0.07 0.80 9.29 59.84 0.56 1.35 16 22 C 0.05 0.43 5.28 -3.84 -0.02 0.41 16 23 C -0.11 -0.70 4.95 -26.65 -0.13 -0.83 16 24 C -0.08 -0.56 2.48 -91.64 -0.23 -0.79 16 25 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 26 C 0.49 3.64 7.33 36.00 0.26 3.91 16 27 O -0.51 -5.12 14.29 -18.75 -0.27 -5.39 16 28 O -0.52 -2.78 13.35 -39.25 -0.52 -3.31 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.76 5.34 -51.93 -0.28 0.48 16 31 H 0.06 0.57 6.01 -51.93 -0.31 0.26 16 32 H 0.10 1.14 7.93 -51.93 -0.41 0.73 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 35 H 0.08 1.29 7.27 -51.93 -0.38 0.91 16 36 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 37 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 39 H 0.08 0.78 7.75 -51.93 -0.40 0.38 16 40 H 0.10 0.99 7.25 -51.93 -0.38 0.62 16 41 H 0.09 0.74 7.66 -51.93 -0.40 0.34 16 42 H 0.09 0.74 5.23 -51.93 -0.27 0.47 16 43 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.57 6.58 -51.93 -0.34 0.22 16 46 H 0.41 0.62 9.10 45.56 0.41 1.03 16 LS Contribution 362.29 15.07 5.46 5.46 Total: -1.00 -35.06 362.29 -9.24 -44.30 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.07 Total: -2.01 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -3.61 Total: -4.92 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.43 Total: -50.83 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.79 Total: -8.70 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.06 -9.24 -44.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589406586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.063 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds