Wall clock time and date at job start Tue Mar 31 2020 14:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.50944 * 2 1 4 4 C 1.53036 * 109.50337 * 120.08335 * 2 1 3 5 5 N 1.46849 * 109.52274 * 60.75309 * 4 2 1 6 6 C 1.38579 * 110.99729 * 185.83981 * 5 4 2 7 7 N 1.31215 * 126.47464 * 359.43809 * 6 5 4 8 8 N 1.28533 * 109.86352 * 179.81887 * 7 6 5 9 9 C 1.30301 * 110.05121 * 0.45384 * 8 7 6 10 10 C 1.50694 * 126.34809 * 179.76429 * 9 8 7 11 11 C 1.52999 * 109.46893 * 269.95198 * 10 9 8 12 12 C 1.50704 * 109.46911 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00215 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99817 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00155 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00389 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46944 * 89.99798 * 16 14 12 18 18 H 1.48496 * 109.47435 * 210.00146 * 16 14 12 19 19 H 1.48505 * 109.46813 * 330.00472 * 16 14 12 20 20 N 1.36459 * 126.46945 * 179.74450 * 6 5 4 21 21 C 1.46490 * 127.13851 * 0.02562 * 20 6 5 22 22 C 1.46842 * 111.20050 * 61.74759 * 5 4 2 23 23 C 1.53039 * 109.52266 * 298.25785 * 22 5 4 24 24 C 1.53123 * 109.31189 * 59.15550 * 23 22 5 25 25 H 1.09000 * 109.52057 * 62.27355 * 24 23 22 26 26 C 1.50697 * 109.52399 * 182.46470 * 24 23 22 27 27 O 1.20821 * 120.00200 * 120.00058 * 26 24 23 28 28 O 1.34227 * 119.99776 * 299.99879 * 26 24 23 29 29 H 1.09001 * 109.46859 * 299.92608 * 1 2 3 30 30 H 1.09004 * 109.46868 * 59.91353 * 1 2 3 31 31 H 1.08995 * 109.48081 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.45883 * 300.74199 * 4 2 1 33 33 H 1.08995 * 109.46584 * 180.77272 * 4 2 1 34 34 H 1.08997 * 109.47061 * 29.95586 * 10 9 8 35 35 H 1.09003 * 109.47401 * 149.95648 * 10 9 8 36 36 H 1.08997 * 109.47583 * 300.00068 * 11 10 9 37 37 H 1.09000 * 109.46997 * 60.00489 * 11 10 9 38 38 H 0.96999 * 120.00449 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.47509 * 90.00285 * 21 20 6 40 40 H 1.09007 * 109.47275 * 209.99879 * 21 20 6 41 41 H 1.08999 * 109.47518 * 329.99971 * 21 20 6 42 42 H 1.08995 * 109.46659 * 178.23678 * 22 5 4 43 43 H 1.09009 * 109.46400 * 58.26507 * 22 5 4 44 44 H 1.09002 * 109.50563 * 179.11883 * 23 22 5 45 45 H 1.09003 * 109.50107 * 299.19864 * 23 22 5 46 46 H 0.96702 * 117.00270 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0409 -0.7231 1.2482 5 7 1.5673 -2.1131 1.2385 6 6 1.9020 -2.7600 2.4175 7 7 2.5616 -2.2464 3.4289 8 7 2.6917 -3.1258 4.3572 9 6 2.1358 -4.2463 3.9922 10 6 2.0788 -5.5189 4.7972 11 6 3.3054 -6.3773 4.4817 12 6 3.2488 -7.6497 5.2873 13 1 2.4206 -7.8285 5.9569 14 6 4.2543 -8.5856 5.1693 15 7 4.2052 -9.6958 5.8727 16 14 5.6866 -8.2768 4.0106 17 1 6.7697 -7.5695 4.7399 18 1 6.1987 -9.5737 3.4999 19 1 5.2299 -7.4414 2.8708 20 7 1.6129 -4.0531 2.7435 21 6 0.8924 -5.0315 1.9252 22 6 2.0843 -2.8421 0.0734 23 6 1.5747 -2.1823 -1.2100 24 6 2.0403 -0.7241 -1.2491 25 1 3.1296 -0.6899 -1.2697 26 6 1.4906 -0.0527 -2.4812 27 8 0.7691 0.9104 -2.3734 28 8 1.8028 -0.5246 -3.6984 29 1 -0.3633 0.5127 0.8907 30 1 -0.3633 0.5152 -0.8893 31 1 -0.3635 -1.0276 -0.0005 32 1 1.6669 -0.2182 2.1390 33 1 3.1308 -0.7108 1.2546 34 1 2.0685 -5.2765 5.8598 35 1 1.1740 -6.0705 4.5416 36 1 3.3157 -6.6197 3.4191 37 1 4.2102 -5.8259 4.7374 38 1 4.9124 -10.3544 5.7895 39 1 1.6016 -5.5783 1.3038 40 1 0.3646 -5.7301 2.5747 41 1 0.1746 -4.5145 1.2884 42 1 1.7419 -3.8762 0.1107 43 1 3.1741 -2.8198 0.0851 44 1 1.9713 -2.7142 -2.0749 45 1 0.4854 -2.2171 -1.2294 46 1 1.4260 -0.0611 -4.4588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589406586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:30 Heat of formation + Delta-G solvation = -30.886771 kcal Electronic energy + Delta-G solvation = -27946.091685 eV Core-core repulsion = 24064.243403 eV Total energy + Delta-G solvation = -3881.848282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.02954 -41.84336 -39.98037 -37.20328 -36.42753 -36.02083 -35.09538 -33.61236 -32.89155 -30.44208 -28.81696 -28.20550 -27.28544 -26.56512 -24.10819 -23.18374 -23.07928 -22.10077 -21.44451 -19.76080 -19.06834 -18.99008 -18.52546 -17.61692 -17.51469 -17.13359 -16.70324 -16.32052 -16.01847 -15.66084 -15.38451 -15.08261 -15.00294 -14.72198 -14.66967 -14.40494 -14.25483 -13.88329 -13.66572 -13.38506 -12.98989 -12.97423 -12.73557 -12.66943 -12.61971 -12.46730 -12.23866 -12.04234 -12.00019 -11.81409 -11.76623 -11.56189 -11.43565 -11.37558 -11.11475 -11.06346 -10.77698 -10.70781 -9.25765 -8.29486 -6.33556 0.76368 1.20777 1.25699 1.34053 1.36929 1.45921 1.78936 2.09777 2.34304 2.56988 3.06002 3.39283 3.44011 3.52940 3.72648 3.84727 3.91215 4.01942 4.10015 4.16234 4.26780 4.29258 4.36419 4.47584 4.50856 4.56162 4.61153 4.64403 4.71143 4.74783 4.79687 4.83875 4.87643 5.00183 5.06345 5.19216 5.22631 5.28625 5.42861 5.44014 5.46520 5.61505 5.67696 5.76724 6.16526 6.25198 6.73879 7.03600 7.31092 7.75944 8.86563 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.002816 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.525593 B = 9939.284289 C =10553.249675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.064 4.064 3 H 0.093 0.907 4 C 0.081 3.919 5 N -0.438 5.438 6 C 0.354 3.646 7 N -0.359 5.359 8 N -0.329 5.329 9 C 0.194 3.806 10 C -0.009 4.009 11 C 0.006 3.994 12 C -0.527 4.527 13 H 0.046 0.954 14 C 0.013 3.987 15 N -0.945 5.945 16 Si 0.942 3.058 17 H -0.276 1.276 18 H -0.280 1.280 19 H -0.251 1.251 20 N -0.479 5.479 21 C 0.063 3.937 22 C 0.045 3.955 23 C -0.096 4.096 24 C -0.081 4.081 25 H 0.124 0.876 26 C 0.493 3.507 27 O -0.536 6.536 28 O -0.511 6.511 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.024 0.976 37 H 0.006 0.994 38 H 0.267 0.733 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.049 0.951 44 H 0.111 0.889 45 H 0.087 0.913 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.830 17.333 -23.738 30.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 H 0.111 0.889 4 C -0.045 4.045 5 N -0.163 5.163 6 C -0.003 4.003 7 N -0.204 5.204 8 N -0.168 5.168 9 C -0.075 4.075 10 C -0.049 4.049 11 C -0.032 4.032 12 C -0.565 4.565 13 H 0.065 0.935 14 C -0.184 4.184 15 N -0.585 5.585 16 Si 0.766 3.234 17 H -0.202 1.202 18 H -0.205 1.205 19 H -0.174 1.174 20 N -0.174 5.174 21 C -0.078 4.078 22 C -0.081 4.081 23 C -0.134 4.134 24 C -0.100 4.100 25 H 0.142 0.858 26 C 0.337 3.663 27 O -0.427 6.427 28 O -0.324 6.324 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.042 0.958 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.135 0.865 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.129 0.871 45 H 0.106 0.894 46 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -7.562 18.249 -22.602 30.017 hybrid contribution 0.577 -0.750 -0.904 1.308 sum -6.984 17.499 -23.505 30.125 Atomic orbital electron populations 1.22014 0.93828 1.02512 1.02476 1.21036 0.97684 0.98993 0.90628 0.88925 1.22050 0.98600 0.84501 0.99386 1.58755 1.56717 1.03616 0.97180 1.22805 0.97833 0.83455 0.96231 1.74426 1.19773 1.25422 1.00794 1.73906 1.21161 0.98813 1.22886 1.25166 0.98299 0.98511 0.85532 1.19935 1.00694 0.86512 0.97774 1.19365 0.93883 0.93478 0.96516 1.21320 1.08186 1.02223 1.24727 0.93525 1.25831 1.00782 0.94620 0.97198 1.70033 1.35305 1.10136 1.43039 0.85792 0.79571 0.77828 0.80201 1.20195 1.20508 1.17431 1.46205 1.44724 1.11155 1.15316 1.22517 0.97692 0.91530 0.96041 1.22547 0.98675 0.98924 0.87971 1.21600 1.03046 0.91964 0.96749 1.21211 1.03235 0.96600 0.88964 0.85803 1.23326 0.76737 0.81012 0.85213 1.90670 1.36290 1.28316 1.87394 1.84498 1.70808 1.60142 1.16998 0.93362 0.91007 0.91842 0.90118 0.92992 0.89748 0.88577 0.95808 0.97522 0.92392 0.88860 0.87911 0.86468 0.88207 0.93219 0.87067 0.89438 0.71062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.40 71.98 0.60 -1.89 16 2 C -0.06 -0.96 2.42 -10.74 -0.03 -0.98 16 3 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.08 1.59 4.32 86.32 0.37 1.96 16 5 N -0.44 -8.95 3.98 -706.15 -2.81 -11.77 16 6 C 0.35 10.31 7.21 260.11 1.88 12.18 16 7 N -0.36 -13.29 11.25 -58.00 -0.65 -13.95 16 8 N -0.33 -13.56 12.18 -49.53 -0.60 -14.17 16 9 C 0.19 7.06 7.32 137.63 1.01 8.07 16 10 C -0.01 -0.36 5.53 29.85 0.16 -0.19 16 11 C 0.01 0.28 4.02 29.85 0.12 0.40 16 12 C -0.53 -28.89 9.66 25.60 0.25 -28.64 16 13 H 0.05 2.76 7.99 -2.91 -0.02 2.74 16 14 C 0.01 0.76 5.47 84.65 0.46 1.22 16 15 N -0.94 -57.46 13.96 21.45 0.30 -57.16 16 16 Si 0.94 43.54 27.47 68.60 1.88 45.42 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 20 N -0.48 -13.66 3.21 -538.19 -1.73 -15.38 16 21 C 0.06 1.15 9.29 127.77 1.19 2.34 16 22 C 0.05 0.65 5.28 86.33 0.46 1.10 16 23 C -0.10 -0.90 4.95 30.65 0.15 -0.75 16 24 C -0.08 -0.90 2.48 -11.46 -0.03 -0.92 16 25 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 26 C 0.49 6.05 7.33 71.23 0.52 6.57 16 27 O -0.54 -9.87 14.29 21.98 0.31 -9.56 16 28 O -0.51 -3.76 13.35 -51.39 -0.69 -4.45 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.32 5.34 -2.38 -0.01 1.30 16 31 H 0.06 1.02 6.01 -2.39 -0.01 1.01 16 32 H 0.08 1.87 7.93 -2.39 -0.02 1.85 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.10 3.18 7.27 -2.39 -0.02 3.16 16 36 H 0.02 1.02 7.20 -2.39 -0.02 1.01 16 37 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.09 1.48 7.75 -2.39 -0.02 1.46 16 40 H 0.10 1.80 7.25 -2.38 -0.02 1.78 16 41 H 0.12 1.47 7.66 -2.39 -0.02 1.45 16 42 H 0.10 1.25 5.23 -2.39 -0.01 1.24 16 43 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.09 0.83 6.58 -2.39 -0.02 0.81 16 46 H 0.43 -0.06 9.10 -74.06 -0.67 -0.74 16 Total: -1.00 -77.10 362.29 3.41 -73.69 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.28 Total: 6.85 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 7.12 Total: 0.46 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -5.49 Total: -112.42 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.37 Total: -14.00 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Total: -77.10 3.41 -73.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589406586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.803 kcal (2) G-P(sol) polarization free energy of solvation -77.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds