Wall clock time and date at job start Tue Mar 31 2020 14:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 5 5 C 1.50703 * 109.46912 * 65.00249 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47171 * 89.99544 * 9 7 5 11 11 H 1.48500 * 109.46632 * 209.99795 * 9 7 5 12 12 H 1.48494 * 109.47053 * 329.99231 * 9 7 5 13 13 C 1.50703 * 109.46941 * 120.00069 * 2 1 3 14 14 N 1.30294 * 126.34962 * 59.68670 * 13 2 1 15 15 N 1.28532 * 110.05027 * 179.82092 * 14 13 2 16 16 C 1.31213 * 109.86288 * 0.45141 * 15 14 13 17 17 N 1.38581 * 126.47219 * 179.68879 * 16 15 14 18 18 C 1.47894 * 110.99870 * 0.04682 * 17 16 15 19 19 C 1.53993 * 107.05969 * 214.15376 * 18 17 16 20 20 H 1.08998 * 110.31425 * 120.13817 * 19 18 17 21 21 C 1.53004 * 110.31125 * 242.31042 * 19 18 17 22 22 C 1.54601 * 105.13927 * 1.22184 * 19 18 17 23 23 H 1.08996 * 110.72692 * 263.42688 * 22 19 18 24 24 C 1.50700 * 110.72261 * 140.31499 * 22 19 18 25 25 O 1.20825 * 119.99751 * 0.02562 * 24 22 19 26 26 O 1.34225 * 119.99727 * 180.02562 * 24 22 19 27 27 C 1.48532 * 111.00132 * 242.64981 * 17 16 15 28 28 N 1.36450 * 107.05322 * 359.73265 * 16 15 14 29 29 C 1.46506 * 127.13675 * 180.02562 * 28 16 15 30 30 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 31 31 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 33 33 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 34 34 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 35 35 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.91910 * 333.50676 * 18 17 16 37 37 H 1.09000 * 109.92172 * 94.60518 * 18 17 16 38 38 H 1.09004 * 109.47177 * 58.54455 * 21 19 18 39 39 H 1.09003 * 109.47528 * 178.53940 * 21 19 18 40 40 H 1.09003 * 109.46941 * 298.54804 * 21 19 18 41 41 H 0.96703 * 116.99808 * 180.02562 * 26 24 22 42 42 H 1.09000 * 110.66504 * 278.15553 * 27 17 16 43 43 H 1.09002 * 110.66747 * 41.28680 * 27 17 16 44 44 H 1.08995 * 109.46832 * 269.96916 * 29 28 16 45 45 H 1.09003 * 109.47024 * 29.97122 * 29 28 16 46 46 H 1.09000 * 109.47073 * 149.97040 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3756 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8511 9 14 1.4989 0.5628 -5.2496 10 1 2.5650 1.5416 -5.5823 11 1 1.3112 -0.3711 -6.3889 12 1 0.2282 1.2850 -4.9871 13 6 2.0322 -0.7104 1.2305 14 7 1.7902 -1.9473 1.5610 15 7 2.3762 -2.2300 2.6695 16 6 3.0208 -1.1772 3.1142 17 7 3.7629 -1.0980 4.2819 18 6 3.7506 -2.3875 5.0060 19 6 3.7744 -2.0609 6.5107 20 1 2.8896 -2.4676 7.0002 21 6 5.0440 -2.6205 7.1556 22 6 3.7688 -0.5169 6.5888 23 1 4.7820 -0.1330 6.7079 24 6 2.8854 -0.0431 7.7141 25 8 2.3036 -0.8461 8.4044 26 8 2.7449 1.2709 7.9493 27 6 3.1791 -0.1028 5.2172 28 7 2.8216 -0.1747 2.2102 29 6 3.3453 1.1920 2.2753 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.1263 -0.7996 -1.2055 34 1 1.6053 -1.7198 -1.2951 35 1 2.9222 -1.8427 -4.7318 36 1 2.8451 -2.9425 4.7608 37 1 4.6294 -2.9733 4.7363 38 1 5.9191 -2.1955 6.6639 39 1 5.0594 -2.3596 8.2139 40 1 5.0581 -3.7052 7.0485 41 1 2.1681 1.5265 8.6821 42 1 3.4947 0.9061 4.9515 43 1 2.0916 -0.1766 5.2279 44 1 2.6362 1.8279 2.8051 45 1 4.2983 1.1911 2.8044 46 1 3.4912 1.5737 1.2648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592471205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:08 Heat of formation + Delta-G solvation = -11.584264 kcal Electronic energy + Delta-G solvation = -27746.728823 eV Core-core repulsion = 23865.717560 eV Total energy + Delta-G solvation = -3881.011263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.70908 -41.06774 -39.06940 -36.60052 -35.42314 -34.76485 -33.53724 -32.12812 -30.93884 -28.47246 -27.44799 -26.93782 -26.39794 -24.46490 -23.92625 -22.36577 -21.86934 -20.81405 -20.11120 -18.98882 -18.54529 -17.81953 -16.77064 -16.46651 -16.30853 -16.22309 -15.53196 -15.13969 -14.53783 -14.45352 -14.23886 -13.94485 -13.75615 -13.37740 -13.24138 -13.15274 -12.81943 -12.67706 -12.35969 -12.34990 -11.99965 -11.79059 -11.49452 -11.41729 -11.30627 -11.16188 -11.04497 -10.99612 -10.95276 -10.71296 -10.48431 -10.38764 -9.99856 -9.85864 -9.76789 -9.30176 -9.12401 -8.37538 -8.05547 -6.00897 -4.04850 1.67661 2.02948 2.36406 2.57881 3.23790 3.30439 3.37590 3.39760 3.71113 3.82047 3.98199 4.42843 4.43568 4.67415 4.74533 4.79418 4.88086 4.93565 5.03700 5.08132 5.14397 5.23681 5.30771 5.34498 5.39642 5.40498 5.52951 5.57966 5.70643 5.78926 5.93930 6.00884 6.03126 6.05394 6.13256 6.24521 6.39969 6.67523 6.74614 6.87519 7.02362 7.32649 7.41254 7.61856 7.77816 7.98185 8.33819 9.00779 9.17402 9.58776 11.10134 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026432 B = 0.002623 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.074213 B =10673.149777 C =11104.890615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.002 4.002 3 H 0.073 0.927 4 C 0.038 3.962 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.059 3.941 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.217 3.783 14 N -0.282 5.282 15 N -0.317 5.317 16 C 0.319 3.681 17 N -0.428 5.428 18 C 0.051 3.949 19 C -0.093 4.093 20 H 0.101 0.899 21 C -0.142 4.142 22 C -0.083 4.083 23 H 0.128 0.872 24 C 0.489 3.511 25 O -0.507 6.507 26 O -0.513 6.513 27 C 0.051 3.949 28 N -0.483 5.483 29 C 0.075 3.925 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.014 0.986 34 H 0.032 0.968 35 H 0.261 0.739 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.412 0.588 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 6.924 24.169 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.023 4.023 3 H 0.091 0.909 4 C 0.000 4.000 5 C -0.559 4.559 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 C -0.050 4.050 14 N -0.120 5.120 15 N -0.161 5.161 16 C -0.037 4.037 17 N -0.151 5.151 18 C -0.076 4.076 19 C -0.112 4.112 20 H 0.119 0.881 21 C -0.199 4.199 22 C -0.102 4.102 23 H 0.146 0.854 24 C 0.330 3.670 25 O -0.394 6.394 26 O -0.325 6.325 27 C -0.077 4.077 28 N -0.178 5.178 29 C -0.068 4.068 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.271 0.729 42 H 0.120 0.880 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.141 5.195 23.692 24.606 hybrid contribution -0.570 1.862 -0.124 1.951 sum 3.571 7.058 23.568 24.860 Atomic orbital electron populations 1.21670 0.93550 1.02528 1.00588 1.20008 0.96257 0.97608 0.88434 0.90912 1.19114 0.96190 0.96305 0.88386 1.21133 1.35634 1.08471 0.90712 0.92334 1.25007 0.95158 0.95010 0.99096 1.69981 1.38367 1.20903 1.23596 0.86602 0.78877 0.79750 0.82808 1.20755 1.21212 1.19810 1.25656 0.94156 0.91845 0.93342 1.74024 1.19763 1.11096 1.07126 1.74475 1.11313 1.22088 1.08215 1.22484 1.00166 0.87329 0.93755 1.61529 1.43982 1.08940 1.00696 1.23038 1.05039 0.89359 0.90156 1.22122 1.01671 0.91490 0.95908 0.88061 1.21842 0.96022 1.01695 1.00371 1.22031 0.99874 0.97691 0.90651 0.85422 1.23124 0.79574 0.80006 0.84286 1.90737 1.45150 1.55407 1.48118 1.84537 1.66488 1.26608 1.54902 1.23273 0.98340 0.97239 0.88825 1.46131 1.41118 1.12075 1.18464 1.22075 1.00052 0.79353 1.05344 0.90607 0.92036 0.95066 0.96767 0.94936 0.92893 0.89768 0.88481 0.91783 0.92369 0.91511 0.72888 0.88018 0.92123 0.90725 0.89169 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.98 37.15 0.33 -2.01 16 2 C 0.00 -0.04 2.70 -91.77 -0.25 -0.29 16 3 H 0.07 1.32 6.94 -51.93 -0.36 0.96 16 4 C 0.04 0.97 4.43 -27.88 -0.12 0.85 16 5 C -0.52 -14.04 8.41 -34.44 -0.29 -14.33 16 6 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 13 C 0.22 4.29 6.58 -154.01 -1.01 3.28 16 14 N -0.28 -6.21 12.18 32.99 0.40 -5.81 16 15 N -0.32 -6.29 10.70 30.31 0.32 -5.96 16 16 C 0.32 5.21 7.04 -318.88 -2.24 2.97 16 17 N -0.43 -5.22 5.32 -170.56 -0.91 -6.12 16 18 C 0.05 0.57 6.13 -2.76 -0.02 0.55 16 19 C -0.09 -0.80 2.99 -89.26 -0.27 -1.07 16 20 H 0.10 1.01 6.85 -51.93 -0.36 0.65 16 21 C -0.14 -0.97 8.89 37.16 0.33 -0.64 16 22 C -0.08 -0.64 3.11 -89.91 -0.28 -0.92 16 23 H 0.13 0.75 7.86 -51.93 -0.41 0.34 16 24 C 0.49 4.07 7.63 36.01 0.27 4.35 16 25 O -0.51 -5.74 16.20 -18.75 -0.30 -6.04 16 26 O -0.51 -3.03 13.42 -39.25 -0.53 -3.55 16 27 C 0.05 0.48 5.46 -1.90 -0.01 0.47 16 28 N -0.48 -7.76 3.21 -121.45 -0.39 -8.15 16 29 C 0.08 0.82 9.78 59.85 0.59 1.40 16 30 H 0.08 1.43 6.95 -51.93 -0.36 1.07 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.08 1.12 6.84 -51.93 -0.36 0.77 16 37 H 0.10 1.03 7.69 -51.93 -0.40 0.63 16 38 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.41 0.81 9.10 45.56 0.41 1.23 16 42 H 0.10 0.77 7.25 -51.93 -0.38 0.39 16 43 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.81 7.94 -51.93 -0.41 0.40 16 46 H 0.10 1.07 7.23 -51.93 -0.38 0.70 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -35.60 375.80 -9.37 -44.98 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.29 Total: -1.37 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -3.06 Total: -3.82 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.17 Total: -51.94 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.83 Total: -9.59 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.60 -9.37 -44.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592471205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.394 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds