Wall clock time and date at job start Tue Mar 31 2020 14:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 5 5 C 1.50703 * 109.46912 * 65.00249 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47171 * 89.99544 * 9 7 5 11 11 H 1.48500 * 109.46632 * 209.99795 * 9 7 5 12 12 H 1.48494 * 109.47053 * 329.99231 * 9 7 5 13 13 C 1.50703 * 109.46941 * 120.00069 * 2 1 3 14 14 N 1.30294 * 126.34962 * 59.68670 * 13 2 1 15 15 N 1.28532 * 110.05027 * 179.82092 * 14 13 2 16 16 C 1.31213 * 109.86288 * 0.45141 * 15 14 13 17 17 N 1.38581 * 126.47219 * 179.68879 * 16 15 14 18 18 C 1.47894 * 110.99870 * 0.04682 * 17 16 15 19 19 C 1.53993 * 107.05969 * 214.15376 * 18 17 16 20 20 H 1.08998 * 110.31425 * 120.13817 * 19 18 17 21 21 C 1.53004 * 110.31125 * 242.31042 * 19 18 17 22 22 C 1.54601 * 105.13927 * 1.22184 * 19 18 17 23 23 H 1.08996 * 110.72692 * 263.42688 * 22 19 18 24 24 C 1.50700 * 110.72261 * 140.31499 * 22 19 18 25 25 O 1.20825 * 119.99751 * 0.02562 * 24 22 19 26 26 O 1.34225 * 119.99727 * 180.02562 * 24 22 19 27 27 C 1.48532 * 111.00132 * 242.64981 * 17 16 15 28 28 N 1.36450 * 107.05322 * 359.73265 * 16 15 14 29 29 C 1.46506 * 127.13675 * 180.02562 * 28 16 15 30 30 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 31 31 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 33 33 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 34 34 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 35 35 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.91910 * 333.50676 * 18 17 16 37 37 H 1.09000 * 109.92172 * 94.60518 * 18 17 16 38 38 H 1.09004 * 109.47177 * 58.54455 * 21 19 18 39 39 H 1.09003 * 109.47528 * 178.53940 * 21 19 18 40 40 H 1.09003 * 109.46941 * 298.54804 * 21 19 18 41 41 H 0.96703 * 116.99808 * 180.02562 * 26 24 22 42 42 H 1.09000 * 110.66504 * 278.15553 * 27 17 16 43 43 H 1.09002 * 110.66747 * 41.28680 * 27 17 16 44 44 H 1.08995 * 109.46832 * 269.96916 * 29 28 16 45 45 H 1.09003 * 109.47024 * 29.97122 * 29 28 16 46 46 H 1.09000 * 109.47073 * 149.97040 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3756 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8511 9 14 1.4989 0.5628 -5.2496 10 1 2.5650 1.5416 -5.5823 11 1 1.3112 -0.3711 -6.3889 12 1 0.2282 1.2850 -4.9871 13 6 2.0322 -0.7104 1.2305 14 7 1.7902 -1.9473 1.5610 15 7 2.3762 -2.2300 2.6695 16 6 3.0208 -1.1772 3.1142 17 7 3.7629 -1.0980 4.2819 18 6 3.7506 -2.3875 5.0060 19 6 3.7744 -2.0609 6.5107 20 1 2.8896 -2.4676 7.0002 21 6 5.0440 -2.6205 7.1556 22 6 3.7688 -0.5169 6.5888 23 1 4.7820 -0.1330 6.7079 24 6 2.8854 -0.0431 7.7141 25 8 2.3036 -0.8461 8.4044 26 8 2.7449 1.2709 7.9493 27 6 3.1791 -0.1028 5.2172 28 7 2.8216 -0.1747 2.2102 29 6 3.3453 1.1920 2.2753 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.1263 -0.7996 -1.2055 34 1 1.6053 -1.7198 -1.2951 35 1 2.9222 -1.8427 -4.7318 36 1 2.8451 -2.9425 4.7608 37 1 4.6294 -2.9733 4.7363 38 1 5.9191 -2.1955 6.6639 39 1 5.0594 -2.3596 8.2139 40 1 5.0581 -3.7052 7.0485 41 1 2.1681 1.5265 8.6821 42 1 3.4947 0.9061 4.9515 43 1 2.0916 -0.1766 5.2279 44 1 2.6362 1.8279 2.8051 45 1 4.2983 1.1911 2.8044 46 1 3.4912 1.5737 1.2648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592471205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:07 Heat of formation + Delta-G solvation = -34.627210 kcal Electronic energy + Delta-G solvation = -27747.728040 eV Core-core repulsion = 23865.717560 eV Total energy + Delta-G solvation = -3882.010480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.06062 -41.77122 -39.89875 -37.23700 -37.07693 -35.98554 -34.73093 -33.93256 -31.70791 -29.92501 -28.80843 -28.45230 -27.18496 -25.94838 -25.06253 -23.77443 -22.90573 -21.91723 -21.09783 -20.31013 -19.18741 -18.70014 -18.56955 -17.58430 -17.46644 -17.21586 -16.61297 -16.38998 -16.12212 -15.47082 -15.20510 -15.08068 -14.87251 -14.43561 -14.38253 -14.19503 -13.99089 -13.73752 -13.57670 -13.33116 -13.13411 -12.96202 -12.81186 -12.69157 -12.61038 -12.44548 -12.26582 -12.14021 -12.02630 -11.98919 -11.77801 -11.74692 -11.50601 -11.45150 -11.17366 -11.13413 -10.67892 -10.53710 -9.40350 -8.15275 -6.27202 0.71450 1.05958 1.22777 1.44686 1.46542 1.57251 1.78103 1.96255 2.44594 2.68689 3.08499 3.18857 3.24407 3.47096 3.72297 3.80776 3.94975 3.96982 4.05492 4.14344 4.31227 4.35363 4.40597 4.43659 4.47855 4.54005 4.60239 4.63422 4.68461 4.80035 4.82734 4.97951 5.05072 5.08847 5.10845 5.17712 5.30295 5.34983 5.40752 5.46697 5.48886 5.55742 5.70533 5.84747 6.11144 6.21491 6.89071 6.91662 7.42193 7.75425 8.97290 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026432 B = 0.002623 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.074213 B =10673.149777 C =11104.890615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.010 3.990 3 H 0.100 0.900 4 C 0.050 3.950 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.256 1.256 13 C 0.202 3.798 14 N -0.328 5.328 15 N -0.359 5.359 16 C 0.338 3.662 17 N -0.420 5.420 18 C 0.050 3.950 19 C -0.086 4.086 20 H 0.085 0.915 21 C -0.137 4.137 22 C -0.075 4.075 23 H 0.157 0.843 24 C 0.497 3.503 25 O -0.542 6.542 26 O -0.505 6.505 27 C 0.051 3.949 28 N -0.478 5.478 29 C 0.062 3.938 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.062 0.938 33 H -0.021 1.021 34 H -0.012 1.012 35 H 0.261 0.739 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.430 0.570 42 H 0.131 0.869 43 H 0.045 0.955 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 10.463 25.654 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.011 4.011 3 H 0.118 0.882 4 C 0.012 3.988 5 C -0.565 4.565 6 H 0.096 0.904 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.180 1.180 13 C -0.068 4.068 14 N -0.166 5.166 15 N -0.203 5.203 16 C -0.019 4.019 17 N -0.145 5.145 18 C -0.077 4.077 19 C -0.105 4.105 20 H 0.103 0.897 21 C -0.195 4.195 22 C -0.094 4.094 23 H 0.175 0.825 24 C 0.339 3.661 25 O -0.432 6.432 26 O -0.318 6.318 27 C -0.075 4.075 28 N -0.172 5.172 29 C -0.079 4.079 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.081 0.919 33 H -0.003 1.003 34 H 0.006 0.994 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.292 0.708 42 H 0.149 0.851 43 H 0.064 0.936 44 H 0.126 0.874 45 H 0.133 0.867 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.734 8.795 25.213 27.119 hybrid contribution -0.690 0.772 -0.451 1.130 sum 4.043 9.568 24.762 26.852 Atomic orbital electron populations 1.21580 0.92400 1.01518 1.02052 1.19760 0.97157 0.97999 0.86222 0.88214 1.18855 0.93664 0.94821 0.91496 1.21582 1.34958 1.08873 0.91097 0.90367 1.26033 0.95103 0.95960 1.02993 1.70159 1.40190 1.23137 1.24358 0.85415 0.79301 0.78147 0.77995 1.19678 1.21653 1.17959 1.25370 0.95539 0.91693 0.94182 1.73908 1.21455 1.12795 1.08447 1.74376 1.13391 1.24207 1.08359 1.22876 0.98188 0.86410 0.94454 1.61697 1.42636 1.10075 1.00069 1.23068 1.03829 0.88938 0.91897 1.22009 1.02112 0.92672 0.93686 0.89712 1.21818 0.95231 1.01745 1.00658 1.22037 1.01187 0.96664 0.89522 0.82513 1.23093 0.78795 0.80395 0.83795 1.90741 1.46519 1.56460 1.49502 1.84489 1.66694 1.24952 1.55702 1.23400 0.97572 0.97651 0.88910 1.46285 1.40094 1.13678 1.17142 1.22546 1.02035 0.76936 1.06334 0.90667 0.94339 0.91858 1.00304 0.99392 0.92999 0.92540 0.88144 0.90574 0.91644 0.91544 0.70759 0.85114 0.93609 0.87448 0.86745 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.98 71.98 0.65 -3.69 16 2 C 0.01 0.38 2.70 -11.54 -0.03 0.35 16 3 H 0.10 3.45 6.94 -2.39 -0.02 3.43 16 4 C 0.05 2.65 4.43 29.85 0.13 2.79 16 5 C -0.53 -28.59 8.41 25.60 0.22 -28.37 16 6 H 0.08 3.85 7.06 -2.91 -0.02 3.83 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 8 N -0.94 -58.10 13.29 21.45 0.28 -57.82 16 9 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 13 C 0.20 8.07 6.58 137.64 0.91 8.98 16 14 N -0.33 -15.14 12.18 -49.53 -0.60 -15.75 16 15 N -0.36 -14.86 10.70 -58.01 -0.62 -15.48 16 16 C 0.34 10.95 7.04 260.11 1.83 12.78 16 17 N -0.42 -9.62 5.32 -693.52 -3.69 -13.31 16 18 C 0.05 1.09 6.13 86.45 0.53 1.62 16 19 C -0.09 -1.37 2.99 -9.91 -0.03 -1.40 16 20 H 0.08 1.69 6.85 -2.39 -0.02 1.67 16 21 C -0.14 -1.60 8.89 71.98 0.64 -0.96 16 22 C -0.07 -0.94 3.11 -10.33 -0.03 -0.97 16 23 H 0.16 1.12 7.86 -2.39 -0.02 1.10 16 24 C 0.50 7.03 7.63 71.24 0.54 7.58 16 25 O -0.54 -11.57 16.20 21.97 0.36 -11.22 16 26 O -0.50 -4.23 13.42 -51.37 -0.69 -4.92 16 27 C 0.05 0.82 5.46 86.65 0.47 1.29 16 28 N -0.48 -14.81 3.21 -538.17 -1.73 -16.54 16 29 C 0.06 1.15 9.78 127.77 1.25 2.40 16 30 H 0.07 2.75 6.95 -2.39 -0.02 2.73 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 33 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 34 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H 0.26 15.28 8.31 -92.71 -0.77 14.50 16 36 H 0.06 1.59 6.84 -2.39 -0.02 1.57 16 37 H 0.10 2.11 7.69 -2.39 -0.02 2.10 16 38 H 0.08 0.72 8.13 -2.38 -0.02 0.70 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.43 0.36 9.10 -74.05 -0.67 -0.32 16 42 H 0.13 1.35 7.25 -2.39 -0.02 1.33 16 43 H 0.05 0.90 7.90 -2.39 -0.02 0.88 16 44 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.11 1.58 7.94 -2.39 -0.02 1.56 16 46 H 0.10 1.86 7.23 -2.39 -0.02 1.84 16 Total: -1.00 -82.47 375.80 3.20 -79.28 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.32 Total: 7.85 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 7.54 Total: 2.66 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -6.36 Total: -118.90 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.33 Total: -16.14 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -82.47 3.20 -79.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592471205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.650 kcal (2) G-P(sol) polarization free energy of solvation -82.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds