Wall clock time and date at job start Tue Mar 31 2020 14:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 110.36760 * 2 1 4 4 C 1.54387 * 110.32071 * 237.81828 * 2 1 3 5 5 N 1.48556 * 104.59445 * 264.95442 * 4 2 1 6 6 C 1.38577 * 110.99801 * 200.95714 * 5 4 2 7 7 N 1.31213 * 126.47499 * 359.69996 * 6 5 4 8 8 N 1.28532 * 109.86084 * 179.81629 * 7 6 5 9 9 C 1.30293 * 110.05069 * 0.45012 * 8 7 6 10 10 C 1.50701 * 126.34446 * 179.69292 * 9 8 7 11 11 C 1.53002 * 109.47333 * 239.41807 * 10 9 8 12 12 C 1.53004 * 109.47089 * 359.41675 * 10 9 8 13 13 C 1.50704 * 109.47027 * 119.41602 * 10 9 8 14 14 H 1.07992 * 119.99780 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99809 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00173 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99724 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47091 * 90.00473 * 17 15 13 19 19 H 1.48506 * 109.47099 * 210.00346 * 17 15 13 20 20 H 1.48497 * 109.47364 * 330.00036 * 17 15 13 21 21 N 1.36451 * 126.47146 * 179.97438 * 6 5 4 22 22 C 1.46505 * 127.13870 * 0.03358 * 21 6 5 23 23 C 1.48557 * 104.22100 * 320.51981 * 5 4 2 24 24 C 1.54258 * 110.32382 * 122.18612 * 2 1 3 25 25 H 1.08994 * 110.32568 * 359.97438 * 24 2 1 26 26 C 1.50701 * 110.31915 * 237.78837 * 24 2 1 27 27 O 1.20825 * 120.00387 * 0.02562 * 26 24 2 28 28 O 1.34226 * 120.00316 * 179.97438 * 26 24 2 29 29 H 1.08998 * 109.46892 * 297.81708 * 1 2 3 30 30 H 1.09000 * 109.47012 * 57.81657 * 1 2 3 31 31 H 1.08997 * 109.47034 * 177.81811 * 1 2 3 32 32 H 1.08997 * 110.41228 * 23.73816 * 4 2 1 33 33 H 1.08996 * 110.40762 * 146.05423 * 4 2 1 34 34 H 1.09007 * 109.46846 * 62.63563 * 11 10 9 35 35 H 1.08993 * 109.46906 * 182.63954 * 11 10 9 36 36 H 1.09002 * 109.46655 * 302.63992 * 11 10 9 37 37 H 1.09008 * 109.46750 * 60.00486 * 12 10 9 38 38 H 1.09001 * 109.46734 * 179.97438 * 12 10 9 39 39 H 1.08989 * 109.47208 * 300.00217 * 12 10 9 40 40 H 0.96996 * 120.00291 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47263 * 84.99860 * 22 21 6 42 42 H 1.09000 * 109.46881 * 205.00427 * 22 21 6 43 43 H 1.09004 * 109.46652 * 325.00194 * 22 21 6 44 44 H 1.09000 * 110.41275 * 280.69912 * 23 5 4 45 45 H 1.09001 * 110.40885 * 158.26258 * 23 5 4 46 46 H 0.96697 * 117.00607 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0662 -0.7711 -1.2254 5 7 2.3148 -2.1467 -0.7226 6 6 3.2110 -2.8191 -1.5380 7 7 3.7842 -2.3494 -2.6209 8 7 4.5598 -3.2411 -3.1263 9 6 4.5205 -4.3268 -2.4071 10 6 5.2817 -5.6005 -2.6703 11 6 4.2954 -6.7563 -2.8504 12 6 6.1183 -5.4413 -3.9414 13 6 6.1904 -5.8927 -1.5041 14 1 6.2140 -5.2234 -0.6570 15 6 6.9909 -7.0153 -1.5183 16 7 6.9618 -7.8307 -2.5497 17 14 8.1168 -7.3778 -0.0725 18 1 7.3932 -8.2105 0.9217 19 1 9.3171 -8.1096 -0.5511 20 1 8.5351 -6.1018 0.5613 21 7 3.6603 -4.0965 -1.3694 22 6 3.2958 -5.0282 -0.2992 23 6 2.8807 -1.9421 0.6357 24 6 2.0659 -0.7705 1.2242 25 1 1.2389 -1.1484 1.8254 26 6 2.9540 0.1194 2.0550 27 8 3.1506 1.2625 1.7165 28 8 3.5260 -0.3574 3.1718 29 1 -0.3633 0.4796 0.9089 30 1 -0.3633 0.5474 -0.8698 31 1 -0.3633 -1.0269 -0.0391 32 1 1.3213 -0.7859 -2.0209 33 1 2.9929 -0.3214 -1.5817 34 1 3.6690 -6.5668 -3.7222 35 1 4.8468 -7.6854 -2.9941 36 1 3.6677 -6.8397 -1.9632 37 1 6.8211 -4.6179 -3.8130 38 1 6.6692 -6.3624 -4.1315 39 1 5.4611 -5.2299 -4.7848 40 1 7.5252 -8.6202 -2.5599 41 1 2.3743 -5.5456 -0.5660 42 1 4.0954 -5.7566 -0.1638 43 1 3.1468 -4.4756 0.6284 44 1 3.9361 -1.6771 0.5718 45 1 2.7490 -2.8388 1.2413 46 1 4.0872 0.2509 3.6719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599869884.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:05 Heat of formation + Delta-G solvation = -3.049039 kcal Electronic energy + Delta-G solvation = -28728.452077 eV Core-core repulsion = 24847.810930 eV Total energy + Delta-G solvation = -3880.641148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.33853 -40.93214 -38.84928 -36.44722 -35.78572 -34.35472 -33.25845 -31.38054 -30.70569 -27.99180 -27.07313 -26.37923 -25.67323 -25.34940 -23.97613 -22.23273 -21.90211 -20.43631 -19.80452 -18.84817 -18.37977 -17.58074 -16.72505 -16.35327 -15.98813 -15.85961 -15.10307 -15.06698 -14.72674 -14.12781 -13.91263 -13.79189 -13.41062 -13.08463 -13.02090 -12.79286 -12.53658 -12.25856 -12.07057 -11.83782 -11.66023 -11.46345 -11.34573 -11.22846 -11.16138 -11.02195 -10.92382 -10.82529 -10.78870 -10.54722 -10.34842 -10.15965 -9.89874 -9.77985 -9.40548 -9.38633 -8.90074 -8.52354 -7.75217 -6.17533 -4.30458 1.84320 2.39845 2.65367 2.92109 3.16310 3.25772 3.28144 3.59656 4.01168 4.08132 4.16164 4.25917 4.61362 4.87479 4.93116 5.04305 5.06479 5.11243 5.23165 5.33292 5.44282 5.52221 5.56029 5.61083 5.65518 5.79246 5.83949 5.86817 6.00646 6.06945 6.13384 6.19263 6.40869 6.57411 6.75293 6.76128 6.81032 7.03215 7.17558 7.28048 7.49346 7.52294 7.56249 7.73393 7.89540 8.00832 8.18299 8.66428 9.35464 9.54465 10.83170 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.003851 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.558758 B = 7269.165321 C = 8271.890122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.106 0.894 4 C 0.056 3.944 5 N -0.421 5.421 6 C 0.300 3.700 7 N -0.322 5.322 8 N -0.312 5.312 9 C 0.250 3.750 10 C 0.144 3.856 11 C -0.133 4.133 12 C -0.117 4.117 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.073 3.927 16 N -0.877 5.877 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.275 1.275 21 N -0.471 5.471 22 C 0.076 3.924 23 C 0.046 3.954 24 C -0.082 4.082 25 H 0.124 0.876 26 C 0.487 3.513 27 O -0.509 6.509 28 O -0.512 6.512 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.015 0.985 35 H 0.097 0.903 36 H 0.027 0.973 37 H 0.035 0.965 38 H 0.088 0.912 39 H 0.018 0.982 40 H 0.264 0.736 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.102 0.898 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.346 9.180 10.295 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.124 0.876 4 C -0.071 4.071 5 N -0.145 5.145 6 C -0.057 4.057 7 N -0.167 5.167 8 N -0.149 5.149 9 C -0.018 4.018 10 C 0.141 3.859 11 C -0.192 4.192 12 C -0.175 4.175 13 C -0.553 4.553 14 H 0.072 0.928 15 C -0.130 4.130 16 N -0.514 5.514 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.200 1.200 21 N -0.164 5.164 22 C -0.068 4.068 23 C -0.082 4.082 24 C -0.101 4.101 25 H 0.142 0.858 26 C 0.329 3.671 27 O -0.396 6.396 28 O -0.324 6.324 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.034 0.966 35 H 0.116 0.884 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.133 0.867 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.120 0.880 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -11.577 9.685 8.814 17.479 hybrid contribution 1.251 -0.278 2.293 2.627 sum -10.326 9.407 11.107 17.846 Atomic orbital electron populations 1.21832 0.93147 1.02736 1.02031 1.22108 0.97209 1.00530 0.91374 0.87586 1.23146 1.02319 0.84750 0.96875 1.62222 1.34627 1.16875 1.00738 1.22475 0.99196 0.85638 0.98343 1.74404 1.09653 1.24199 1.08406 1.73994 1.17332 0.98660 1.24960 1.26130 0.91589 0.99737 0.84300 1.16942 0.90625 0.81951 0.96361 1.21918 0.97529 1.02556 0.97161 1.21614 0.98894 1.02442 0.94551 1.20849 1.23342 1.08510 1.02556 0.92756 1.24841 0.96331 0.95706 0.96078 1.69790 1.39193 1.13541 1.28902 0.86543 0.80454 0.78437 0.82333 1.20517 1.20901 1.19980 1.45963 1.35696 1.11120 1.23603 1.22223 1.03355 0.93448 0.87726 1.23161 0.97346 0.97820 0.89832 1.21857 0.97383 0.94774 0.96126 0.85789 1.23242 0.78036 0.86873 0.78999 1.90712 1.59236 1.19900 1.69789 1.84542 1.61423 1.49177 1.37280 0.92589 0.91780 0.91555 0.88519 0.90913 0.96597 0.88402 0.95392 0.94622 0.89303 0.96251 0.92516 0.91028 0.86692 0.90981 0.92227 0.88030 0.72947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.90 37.16 0.33 -0.78 16 2 C -0.09 -0.94 3.24 -89.23 -0.29 -1.23 16 3 H 0.11 1.17 6.46 -51.93 -0.34 0.84 16 4 C 0.06 0.73 5.64 -2.18 -0.01 0.72 16 5 N -0.42 -6.09 5.42 -170.11 -0.92 -7.01 16 6 C 0.30 5.69 6.99 -318.89 -2.23 3.46 16 7 N -0.32 -7.10 10.98 30.31 0.33 -6.77 16 8 N -0.31 -7.54 11.50 32.99 0.38 -7.16 16 9 C 0.25 5.74 6.28 -154.02 -0.97 4.78 16 10 C 0.14 3.42 0.49 -156.81 -0.08 3.34 16 11 C -0.13 -2.97 8.20 37.16 0.30 -2.66 16 12 C -0.12 -2.84 7.76 37.16 0.29 -2.56 16 13 C -0.51 -12.71 6.43 -34.44 -0.22 -12.94 16 14 H 0.05 1.37 7.55 -52.49 -0.40 0.97 16 15 C 0.07 1.81 5.14 -17.82 -0.09 1.72 16 16 N -0.88 -22.16 9.34 55.43 0.52 -21.65 16 17 Si 0.89 19.49 29.54 -169.99 -5.02 14.47 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 N -0.47 -9.21 3.21 -121.46 -0.39 -9.60 16 22 C 0.08 1.18 9.53 59.85 0.57 1.75 16 23 C 0.05 0.56 5.45 -2.19 -0.01 0.55 16 24 C -0.08 -0.79 3.21 -90.39 -0.29 -1.08 16 25 H 0.12 0.92 7.71 -51.93 -0.40 0.52 16 26 C 0.49 5.14 7.49 36.01 0.27 5.41 16 27 O -0.51 -6.75 16.01 -18.75 -0.30 -7.05 16 28 O -0.51 -4.27 13.42 -39.25 -0.53 -4.80 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.10 1.21 7.86 -51.93 -0.41 0.81 16 33 H 0.07 1.11 7.44 -51.93 -0.39 0.72 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 2.34 6.00 -51.93 -0.31 2.03 16 36 H 0.03 0.56 6.07 -51.93 -0.32 0.25 16 37 H 0.03 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 39 H 0.02 0.44 8.14 -51.94 -0.42 0.02 16 40 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 41 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 42 H 0.11 1.99 5.75 -51.93 -0.30 1.69 16 43 H 0.07 0.91 5.64 -51.93 -0.29 0.62 16 44 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 45 H 0.10 1.08 6.17 -51.93 -0.32 0.76 16 46 H 0.41 1.77 9.10 45.56 0.41 2.19 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -30.99 360.23 -8.78 -39.77 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.86 Total: 3.90 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.43 Total: 0.48 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.08 Total: -52.19 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.83 Total: -11.85 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.99 -8.78 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599869884.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.724 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds