Wall clock time and date at job start Tue Mar 31 2020 14:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 110.36760 * 2 1 4 4 C 1.54387 * 110.32071 * 237.81828 * 2 1 3 5 5 N 1.48556 * 104.59445 * 264.95442 * 4 2 1 6 6 C 1.38577 * 110.99801 * 200.95714 * 5 4 2 7 7 N 1.31213 * 126.47499 * 359.69996 * 6 5 4 8 8 N 1.28532 * 109.86084 * 179.81629 * 7 6 5 9 9 C 1.30293 * 110.05069 * 0.45012 * 8 7 6 10 10 C 1.50701 * 126.34446 * 179.69292 * 9 8 7 11 11 C 1.53002 * 109.47333 * 239.41807 * 10 9 8 12 12 C 1.53004 * 109.47089 * 359.41675 * 10 9 8 13 13 C 1.50704 * 109.47027 * 119.41602 * 10 9 8 14 14 H 1.07992 * 119.99780 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99809 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00173 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99724 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47091 * 90.00473 * 17 15 13 19 19 H 1.48506 * 109.47099 * 210.00346 * 17 15 13 20 20 H 1.48497 * 109.47364 * 330.00036 * 17 15 13 21 21 N 1.36451 * 126.47146 * 179.97438 * 6 5 4 22 22 C 1.46505 * 127.13870 * 0.03358 * 21 6 5 23 23 C 1.48557 * 104.22100 * 320.51981 * 5 4 2 24 24 C 1.54258 * 110.32382 * 122.18612 * 2 1 3 25 25 H 1.08994 * 110.32568 * 359.97438 * 24 2 1 26 26 C 1.50701 * 110.31915 * 237.78837 * 24 2 1 27 27 O 1.20825 * 120.00387 * 0.02562 * 26 24 2 28 28 O 1.34226 * 120.00316 * 179.97438 * 26 24 2 29 29 H 1.08998 * 109.46892 * 297.81708 * 1 2 3 30 30 H 1.09000 * 109.47012 * 57.81657 * 1 2 3 31 31 H 1.08997 * 109.47034 * 177.81811 * 1 2 3 32 32 H 1.08997 * 110.41228 * 23.73816 * 4 2 1 33 33 H 1.08996 * 110.40762 * 146.05423 * 4 2 1 34 34 H 1.09007 * 109.46846 * 62.63563 * 11 10 9 35 35 H 1.08993 * 109.46906 * 182.63954 * 11 10 9 36 36 H 1.09002 * 109.46655 * 302.63992 * 11 10 9 37 37 H 1.09008 * 109.46750 * 60.00486 * 12 10 9 38 38 H 1.09001 * 109.46734 * 179.97438 * 12 10 9 39 39 H 1.08989 * 109.47208 * 300.00217 * 12 10 9 40 40 H 0.96996 * 120.00291 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47263 * 84.99860 * 22 21 6 42 42 H 1.09000 * 109.46881 * 205.00427 * 22 21 6 43 43 H 1.09004 * 109.46652 * 325.00194 * 22 21 6 44 44 H 1.09000 * 110.41275 * 280.69912 * 23 5 4 45 45 H 1.09001 * 110.40885 * 158.26258 * 23 5 4 46 46 H 0.96697 * 117.00607 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0662 -0.7711 -1.2254 5 7 2.3148 -2.1467 -0.7226 6 6 3.2110 -2.8191 -1.5380 7 7 3.7842 -2.3494 -2.6209 8 7 4.5598 -3.2411 -3.1263 9 6 4.5205 -4.3268 -2.4071 10 6 5.2817 -5.6005 -2.6703 11 6 4.2954 -6.7563 -2.8504 12 6 6.1183 -5.4413 -3.9414 13 6 6.1904 -5.8927 -1.5041 14 1 6.2140 -5.2234 -0.6570 15 6 6.9909 -7.0153 -1.5183 16 7 6.9618 -7.8307 -2.5497 17 14 8.1168 -7.3778 -0.0725 18 1 7.3932 -8.2105 0.9217 19 1 9.3171 -8.1096 -0.5511 20 1 8.5351 -6.1018 0.5613 21 7 3.6603 -4.0965 -1.3694 22 6 3.2958 -5.0282 -0.2992 23 6 2.8807 -1.9421 0.6357 24 6 2.0659 -0.7705 1.2242 25 1 1.2389 -1.1484 1.8254 26 6 2.9540 0.1194 2.0550 27 8 3.1506 1.2625 1.7165 28 8 3.5260 -0.3574 3.1718 29 1 -0.3633 0.4796 0.9089 30 1 -0.3633 0.5474 -0.8698 31 1 -0.3633 -1.0269 -0.0391 32 1 1.3213 -0.7859 -2.0209 33 1 2.9929 -0.3214 -1.5817 34 1 3.6690 -6.5668 -3.7222 35 1 4.8468 -7.6854 -2.9941 36 1 3.6677 -6.8397 -1.9632 37 1 6.8211 -4.6179 -3.8130 38 1 6.6692 -6.3624 -4.1315 39 1 5.4611 -5.2299 -4.7848 40 1 7.5252 -8.6202 -2.5599 41 1 2.3743 -5.5456 -0.5660 42 1 4.0954 -5.7566 -0.1638 43 1 3.1468 -4.4756 0.6284 44 1 3.9361 -1.6771 0.5718 45 1 2.7490 -2.8388 1.2413 46 1 4.0872 0.2509 3.6719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599869884.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:05 Heat of formation + Delta-G solvation = -21.391735 kcal Electronic energy + Delta-G solvation = -28729.247476 eV Core-core repulsion = 24847.810930 eV Total energy + Delta-G solvation = -3881.436547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.91290 -41.81453 -39.85561 -37.60301 -37.22080 -35.79697 -34.47439 -33.15863 -31.63324 -29.54234 -28.44933 -27.64083 -27.31334 -27.13844 -25.02228 -23.74682 -22.98119 -21.74826 -21.05054 -20.27832 -19.18327 -18.68358 -18.35092 -17.43018 -17.30509 -17.16541 -16.82004 -16.38854 -15.90355 -15.36772 -15.09152 -14.87017 -14.68215 -14.45298 -14.19771 -13.91147 -13.81162 -13.42610 -13.35052 -13.22630 -13.02687 -12.92363 -12.71550 -12.63318 -12.57178 -12.38514 -12.23483 -12.14822 -12.02993 -11.88314 -11.78206 -11.73798 -11.62178 -11.34958 -11.13144 -10.95388 -10.52431 -10.41877 -9.31905 -8.06319 -6.24721 0.86265 1.07267 1.41962 1.44272 1.49118 1.55670 1.90117 1.99061 2.44590 2.77457 3.15134 3.17243 3.25867 3.71921 3.81751 3.92422 4.00819 4.08703 4.12915 4.26187 4.36800 4.39994 4.53643 4.61993 4.63629 4.68912 4.72919 4.78376 4.85132 4.95458 4.98932 5.06249 5.11102 5.13696 5.18774 5.35224 5.35458 5.45748 5.50498 5.54425 5.56949 5.66165 5.98145 6.06058 6.26716 6.28570 6.73983 6.88292 7.43096 7.89625 8.93576 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.003851 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.558758 B = 7269.165321 C = 8271.890122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.096 0.904 4 C 0.054 3.946 5 N -0.411 5.411 6 C 0.321 3.679 7 N -0.358 5.358 8 N -0.345 5.345 9 C 0.230 3.770 10 C 0.142 3.858 11 C -0.121 4.121 12 C -0.106 4.106 13 C -0.520 4.520 14 H 0.046 0.954 15 C 0.038 3.962 16 N -0.895 5.895 17 Si 0.951 3.049 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.281 1.281 21 N -0.470 5.470 22 C 0.069 3.931 23 C 0.046 3.954 24 C -0.074 4.074 25 H 0.160 0.840 26 C 0.491 3.509 27 O -0.542 6.542 28 O -0.507 6.507 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.016 0.984 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.017 0.983 38 H 0.076 0.924 39 H 0.019 0.981 40 H 0.266 0.734 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.036 0.964 45 H 0.125 0.875 46 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.161 9.120 13.046 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.114 0.886 4 C -0.073 4.073 5 N -0.135 5.135 6 C -0.036 4.036 7 N -0.202 5.202 8 N -0.183 5.183 9 C -0.039 4.039 10 C 0.139 3.861 11 C -0.180 4.180 12 C -0.164 4.164 13 C -0.559 4.559 14 H 0.064 0.936 15 C -0.163 4.163 16 N -0.533 5.533 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.212 1.212 20 H -0.206 1.206 21 N -0.163 5.163 22 C -0.072 4.072 23 C -0.081 4.081 24 C -0.093 4.093 25 H 0.177 0.823 26 C 0.334 3.666 27 O -0.432 6.432 28 O -0.321 6.321 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.035 0.965 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.095 0.905 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.054 0.946 45 H 0.143 0.857 46 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -13.398 9.617 11.599 20.163 hybrid contribution 1.795 -0.192 1.489 2.340 sum -11.604 9.426 13.087 19.869 Atomic orbital electron populations 1.21809 0.90912 1.03278 1.03174 1.22032 0.98856 0.99396 0.90007 0.88555 1.23211 1.01280 0.84191 0.98625 1.62368 1.32737 1.17237 1.01205 1.22898 0.97721 0.85437 0.97574 1.74320 1.11000 1.24428 1.10416 1.73886 1.18554 0.99515 1.26377 1.25853 0.93017 0.99312 0.85742 1.16868 0.90875 0.82950 0.95446 1.21758 0.97174 1.01068 0.97980 1.21480 0.98592 1.00873 0.95488 1.20899 1.23942 1.08471 1.02580 0.93607 1.25418 0.97318 0.95545 0.98035 1.69885 1.39622 1.13740 1.30018 0.85674 0.78765 0.77865 0.79999 1.19147 1.21188 1.20647 1.46087 1.34924 1.11723 1.23528 1.22482 1.03507 0.93189 0.88033 1.23248 0.96375 0.99959 0.88566 1.21897 0.97782 0.93459 0.96156 0.82288 1.23323 0.77653 0.86359 0.79250 1.90714 1.60369 1.21373 1.70707 1.84498 1.61379 1.49581 1.36599 0.90841 0.91423 0.91179 0.88193 0.93694 0.96498 0.90070 0.93679 0.96374 0.90524 0.96171 0.92454 0.88987 0.88260 0.87634 0.94583 0.85713 0.70878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.90 71.98 0.64 -1.06 16 2 C -0.08 -1.52 3.24 -9.89 -0.03 -1.55 16 3 H 0.10 2.02 6.46 -2.39 -0.02 2.00 16 4 C 0.05 1.36 5.64 86.45 0.49 1.85 16 5 N -0.41 -11.16 5.42 -692.09 -3.75 -14.91 16 6 C 0.32 11.98 6.99 260.12 1.82 13.80 16 7 N -0.36 -16.06 10.98 -58.01 -0.64 -16.69 16 8 N -0.35 -17.16 11.50 -49.54 -0.57 -17.73 16 9 C 0.23 10.67 6.28 137.64 0.86 11.54 16 10 C 0.14 6.79 0.49 -53.67 -0.03 6.76 16 11 C -0.12 -5.39 8.20 71.98 0.59 -4.80 16 12 C -0.11 -5.33 7.76 71.98 0.56 -4.77 16 13 C -0.52 -25.82 6.43 25.60 0.16 -25.66 16 14 H 0.05 2.31 7.55 -2.91 -0.02 2.29 16 15 C 0.04 1.88 5.14 84.66 0.44 2.31 16 16 N -0.90 -45.39 9.34 21.45 0.20 -45.19 16 17 Si 0.95 39.59 29.54 68.60 2.03 41.61 16 18 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 19 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 N -0.47 -17.96 3.21 -538.17 -1.73 -19.69 16 22 C 0.07 2.00 9.53 127.77 1.22 3.21 16 23 C 0.05 1.00 5.45 86.45 0.47 1.47 16 24 C -0.07 -1.20 3.21 -10.65 -0.03 -1.23 16 25 H 0.16 1.55 7.71 -2.39 -0.02 1.53 16 26 C 0.49 9.21 7.49 71.24 0.53 9.74 16 27 O -0.54 -13.67 16.01 21.97 0.35 -13.31 16 28 O -0.51 -6.98 13.42 -51.38 -0.69 -7.67 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 2.43 7.86 -2.39 -0.02 2.41 16 33 H 0.04 1.40 7.44 -2.39 -0.02 1.38 16 34 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.08 3.89 6.00 -2.39 -0.01 3.88 16 36 H 0.04 1.79 6.07 -2.39 -0.01 1.77 16 37 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.08 4.00 6.07 -2.39 -0.01 3.98 16 39 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 41 H 0.09 2.29 8.08 -2.39 -0.02 2.27 16 42 H 0.10 3.26 5.75 -2.39 -0.01 3.24 16 43 H 0.11 2.28 5.64 -2.39 -0.01 2.27 16 44 H 0.04 0.98 7.68 -2.39 -0.02 0.96 16 45 H 0.12 2.14 6.17 -2.39 -0.01 2.12 16 46 H 0.43 2.59 9.10 -74.06 -0.67 1.92 16 Total: -1.00 -68.45 360.23 3.24 -65.22 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.34 Total: 16.76 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 7.69 Total: 11.61 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -6.49 Total: -114.22 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.34 Total: -20.98 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.61 kcal Total: -68.45 3.24 -65.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599869884.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.824 kcal (2) G-P(sol) polarization free energy of solvation -68.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds