Wall clock time and date at job start Tue Mar 31 2020 13:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47001 * 2 1 4 4 N 1.46500 * 109.46781 * 120.00278 * 2 1 3 5 5 C 1.46501 * 120.00026 * 294.97522 * 4 2 1 6 6 C 1.50701 * 109.47110 * 263.33305 * 5 4 2 7 7 H 1.08001 * 119.99986 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00183 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99621 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00269 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47077 * 89.99814 * 10 8 6 12 12 H 1.48499 * 109.47445 * 209.99512 * 10 8 6 13 13 H 1.48497 * 109.47320 * 329.99736 * 10 8 6 14 14 C 1.34776 * 119.99744 * 114.98338 * 4 2 1 15 15 O 1.21590 * 120.00076 * 3.64005 * 14 4 2 16 16 C 1.47528 * 119.99714 * 183.64333 * 14 4 2 17 17 C 1.36588 * 125.76845 * 173.64843 * 16 14 4 18 18 N 1.34813 * 106.83902 * 179.71127 * 17 16 14 19 19 C 1.46504 * 126.59655 * 180.24323 * 18 17 16 20 20 C 1.53177 * 109.54354 * 34.82039 * 19 18 17 21 21 C 1.53109 * 109.15695 * 183.24198 * 20 19 18 22 22 O 1.42899 * 109.48436 * 57.47602 * 21 20 19 23 23 C 1.42908 * 114.10074 * 298.88990 * 22 21 20 24 24 C 1.53081 * 109.41323 * 61.15687 * 23 22 21 25 25 N 1.40212 * 106.80969 * 0.26222 * 18 17 16 26 26 N 1.28753 * 108.36484 * 0.02562 * 25 18 17 27 27 H 1.09003 * 109.47466 * 300.00189 * 1 2 3 28 28 H 1.09005 * 109.47087 * 59.99993 * 1 2 3 29 29 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46837 * 240.00230 * 2 1 3 31 31 H 1.08999 * 109.47206 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47365 * 300.00351 * 3 2 1 33 33 H 1.09004 * 109.47137 * 60.00414 * 3 2 1 34 34 H 1.08999 * 109.46850 * 23.33061 * 5 4 2 35 35 H 1.08994 * 109.47196 * 143.33131 * 5 4 2 36 36 H 0.96998 * 120.00144 * 180.02562 * 9 8 6 37 37 H 1.08007 * 126.58268 * 359.97438 * 17 16 14 38 38 H 1.09001 * 109.54218 * 155.00130 * 19 18 17 39 39 H 1.09003 * 109.52435 * 303.05976 * 20 19 18 40 40 H 1.09004 * 109.52070 * 63.24758 * 20 19 18 41 41 H 1.09000 * 109.40303 * 297.49473 * 21 20 19 42 42 H 1.08999 * 109.47767 * 177.50753 * 21 20 19 43 43 H 1.09001 * 109.47467 * 301.17451 * 23 22 21 44 44 H 1.09003 * 109.47763 * 181.14417 * 23 22 21 45 45 H 1.09004 * 109.52458 * 182.48849 * 24 23 22 46 46 H 1.09002 * 109.57960 * 62.33186 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7573 -0.1293 2.5240 6 6 2.9544 0.6661 2.9772 7 1 3.8229 0.7451 2.3401 8 6 2.9414 1.2920 4.2056 9 7 1.8840 1.1953 4.9816 10 14 4.4254 2.2773 4.7677 11 1 4.2797 3.6874 4.3254 12 1 4.5187 2.2303 6.2490 13 1 5.6577 1.6976 4.1756 14 6 2.7076 -1.8424 1.0750 15 8 2.9816 -2.2738 -0.0283 16 6 3.1297 -2.5798 2.2811 17 6 3.7215 -3.8107 2.2980 18 7 3.9487 -4.1170 3.5911 19 6 4.5729 -5.3398 4.1024 20 6 5.6578 -5.8076 3.1274 21 6 6.2480 -7.1285 3.6286 22 8 5.2052 -8.0964 3.7618 23 6 4.1878 -7.7330 4.6973 24 6 3.5134 -6.4378 4.2380 25 7 3.4725 -3.0403 4.3526 26 7 2.9937 -2.1555 3.5491 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.8846 0.5221 2.4779 35 1 1.5701 -0.9382 3.2300 36 1 1.8746 1.6359 5.8457 37 1 3.9649 -4.4198 1.4399 38 1 5.0192 -5.1415 5.0768 39 1 5.2205 -5.9568 2.1401 40 1 6.4439 -5.0548 3.0687 41 1 6.7219 -6.9690 4.5971 42 1 6.9897 -7.4889 2.9157 43 1 4.6348 -7.5816 5.6798 44 1 3.4454 -8.5291 4.7543 45 1 2.7673 -6.1352 4.9728 46 1 3.0307 -6.5992 3.2741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645794868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:07 Heat of formation + Delta-G solvation = 24.152003 kcal Electronic energy + Delta-G solvation = -28424.680977 eV Core-core repulsion = 24545.219355 eV Total energy + Delta-G solvation = -3879.461622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74433 -39.66814 -38.80706 -35.70762 -35.39142 -32.80691 -31.67107 -31.60455 -31.10474 -29.85199 -27.07256 -26.49551 -25.61889 -24.16055 -23.36653 -22.80741 -22.04260 -20.71180 -20.10327 -18.59232 -17.39547 -16.54469 -16.45764 -16.18456 -15.90319 -15.48735 -15.28390 -14.98276 -14.54260 -14.31939 -14.24777 -13.88664 -13.68576 -13.46364 -12.97009 -12.85240 -12.38117 -12.18128 -12.01411 -11.83523 -11.70547 -11.61375 -11.55848 -11.43364 -11.35415 -10.90381 -10.85966 -10.73364 -10.68623 -10.34159 -10.14550 -9.85463 -9.81910 -9.67648 -9.43152 -9.20651 -8.70993 -8.24416 -7.57467 -5.90634 -3.90898 1.61847 2.33555 2.53157 3.35846 3.42573 3.44069 3.46111 3.86699 4.05074 4.09899 4.24799 4.44551 4.53808 4.56690 4.66861 4.74588 4.94908 5.03973 5.17270 5.22438 5.25609 5.32166 5.42047 5.45830 5.50690 5.55599 5.61496 5.70063 5.75417 5.89458 5.93552 6.16354 6.24148 6.30859 6.44649 6.48388 6.73214 6.78246 6.80609 6.96768 7.08724 7.60555 7.80761 8.01490 8.37340 8.40825 8.67218 9.01726 9.12994 9.70923 11.17979 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012983 B = 0.004113 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.085056 B = 6806.272706 C = 8131.153659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.135 3.865 3 C -0.151 4.151 4 N -0.574 5.574 5 C 0.230 3.770 6 C -0.505 4.505 7 H 0.051 0.949 8 C 0.072 3.928 9 N -0.888 5.888 10 Si 0.885 3.115 11 H -0.283 1.283 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.599 3.401 15 O -0.581 6.581 16 C -0.087 4.087 17 C 0.073 3.927 18 N -0.372 5.372 19 C 0.155 3.845 20 C -0.171 4.171 21 C 0.067 3.933 22 O -0.380 6.380 23 C 0.066 3.934 24 C -0.168 4.168 25 N -0.085 5.085 26 N -0.130 5.130 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.259 0.741 37 H 0.192 0.808 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.057 0.943 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.948 -15.489 -2.709 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 C -0.209 4.209 4 N -0.303 5.303 5 C 0.110 3.890 6 C -0.544 4.544 7 H 0.070 0.930 8 C -0.130 4.130 9 N -0.527 5.527 10 Si 0.714 3.286 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.385 3.615 15 O -0.462 6.462 16 C -0.225 4.225 17 C -0.083 4.083 18 N -0.156 5.156 19 C 0.052 3.948 20 C -0.210 4.210 21 C -0.010 4.010 22 O -0.299 6.299 23 C -0.011 4.011 24 C -0.207 4.207 25 N -0.064 5.064 26 N -0.003 5.003 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.208 0.792 38 H 0.128 0.872 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.076 0.924 44 H 0.121 0.879 45 H 0.107 0.893 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.806 -15.240 -1.746 15.805 hybrid contribution 1.081 0.583 -0.212 1.247 sum 4.887 -14.658 -1.958 15.575 Atomic orbital electron populations 1.22136 0.95800 1.01613 1.02077 1.20906 0.93424 0.93650 0.88883 1.22044 1.01611 0.95423 1.01831 1.48237 1.51297 1.21038 1.09745 1.19826 0.96851 0.95543 0.76767 1.21218 1.01013 1.30267 1.01949 0.93042 1.24738 0.95553 0.96465 0.96243 1.69910 1.28403 1.43775 1.10617 0.86713 0.83734 0.80347 0.77830 1.20902 1.21327 1.20345 1.16811 0.77975 0.80863 0.85803 1.90667 1.59307 1.70019 1.26256 1.21474 1.11777 0.95716 0.93562 1.23033 0.98994 0.97553 0.88694 1.50681 1.43156 1.16363 1.05420 1.21423 0.93204 0.80772 0.99401 1.22698 0.98838 0.99283 1.00151 1.22556 0.89837 0.87289 1.01321 1.87974 1.34940 1.43950 1.63012 1.22583 0.90546 0.96061 0.91935 1.22687 0.98670 0.94826 1.04497 1.82183 1.16238 0.91325 1.16621 1.75395 1.08562 1.16608 0.99746 0.91729 0.92287 0.93047 0.89552 0.92585 0.93219 0.90662 0.95068 0.91444 0.93086 0.79162 0.87187 0.89533 0.89256 0.92460 0.87789 0.92432 0.87908 0.89305 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.26 37.16 0.34 -2.26 16 2 C 0.14 2.57 3.23 -67.93 -0.22 2.36 16 3 C -0.15 -2.77 8.65 37.16 0.32 -2.45 16 4 N -0.57 -12.77 2.37 -168.69 -0.40 -13.17 16 5 C 0.23 5.74 3.91 -5.19 -0.02 5.72 16 6 C -0.51 -13.66 7.42 -34.44 -0.26 -13.92 16 7 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 8 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 9 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 10 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.60 13.35 7.61 -12.47 -0.09 13.26 16 15 O -0.58 -13.17 16.21 5.29 0.09 -13.08 16 16 C -0.09 -1.83 6.67 -83.55 -0.56 -2.38 16 17 C 0.07 1.21 10.40 -16.84 -0.18 1.03 16 18 N -0.37 -5.75 3.55 -54.38 -0.19 -5.94 16 19 C 0.15 1.64 3.32 -67.74 -0.22 1.42 16 20 C -0.17 -1.44 5.15 -26.58 -0.14 -1.58 16 21 C 0.07 0.47 6.84 37.21 0.25 0.72 16 22 O -0.38 -3.32 10.77 -35.23 -0.38 -3.70 16 23 C 0.07 0.48 6.84 37.20 0.25 0.73 16 24 C -0.17 -1.52 5.75 -26.60 -0.15 -1.68 16 25 N -0.08 -1.73 13.78 60.35 0.83 -0.90 16 26 N -0.13 -3.01 8.05 32.85 0.26 -2.74 16 27 H 0.06 1.13 6.91 -51.93 -0.36 0.77 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.65 6.91 -51.93 -0.36 1.29 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.53 7.08 -51.93 -0.37 1.16 16 34 H 0.03 0.81 6.49 -51.93 -0.34 0.47 16 35 H 0.07 1.82 5.33 -51.93 -0.28 1.54 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.19 2.50 7.27 -52.48 -0.38 2.12 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 0.74 7.08 -51.93 -0.37 0.37 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -33.04 370.27 -6.32 -39.36 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.07 Total: -0.32 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.76 Total: 2.87 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 1.24 Total: -47.60 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.29 Total: -16.79 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.04 -6.32 -39.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645794868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.514 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds