Wall clock time and date at job start Tue Mar 31 2020 13:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47001 * 2 1 4 4 N 1.46500 * 109.46781 * 120.00278 * 2 1 3 5 5 C 1.46501 * 120.00026 * 294.97522 * 4 2 1 6 6 C 1.50701 * 109.47110 * 263.33305 * 5 4 2 7 7 H 1.08001 * 119.99986 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00183 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99621 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00269 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47077 * 89.99814 * 10 8 6 12 12 H 1.48499 * 109.47445 * 209.99512 * 10 8 6 13 13 H 1.48497 * 109.47320 * 329.99736 * 10 8 6 14 14 C 1.34776 * 119.99744 * 114.98338 * 4 2 1 15 15 O 1.21590 * 120.00076 * 3.64005 * 14 4 2 16 16 C 1.47528 * 119.99714 * 183.64333 * 14 4 2 17 17 C 1.36588 * 125.76845 * 173.64843 * 16 14 4 18 18 N 1.34813 * 106.83902 * 179.71127 * 17 16 14 19 19 C 1.46504 * 126.59655 * 180.24323 * 18 17 16 20 20 C 1.53177 * 109.54354 * 34.82039 * 19 18 17 21 21 C 1.53109 * 109.15695 * 183.24198 * 20 19 18 22 22 O 1.42899 * 109.48436 * 57.47602 * 21 20 19 23 23 C 1.42908 * 114.10074 * 298.88990 * 22 21 20 24 24 C 1.53081 * 109.41323 * 61.15687 * 23 22 21 25 25 N 1.40212 * 106.80969 * 0.26222 * 18 17 16 26 26 N 1.28753 * 108.36484 * 0.02562 * 25 18 17 27 27 H 1.09003 * 109.47466 * 300.00189 * 1 2 3 28 28 H 1.09005 * 109.47087 * 59.99993 * 1 2 3 29 29 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46837 * 240.00230 * 2 1 3 31 31 H 1.08999 * 109.47206 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47365 * 300.00351 * 3 2 1 33 33 H 1.09004 * 109.47137 * 60.00414 * 3 2 1 34 34 H 1.08999 * 109.46850 * 23.33061 * 5 4 2 35 35 H 1.08994 * 109.47196 * 143.33131 * 5 4 2 36 36 H 0.96998 * 120.00144 * 180.02562 * 9 8 6 37 37 H 1.08007 * 126.58268 * 359.97438 * 17 16 14 38 38 H 1.09001 * 109.54218 * 155.00130 * 19 18 17 39 39 H 1.09003 * 109.52435 * 303.05976 * 20 19 18 40 40 H 1.09004 * 109.52070 * 63.24758 * 20 19 18 41 41 H 1.09000 * 109.40303 * 297.49473 * 21 20 19 42 42 H 1.08999 * 109.47767 * 177.50753 * 21 20 19 43 43 H 1.09001 * 109.47467 * 301.17451 * 23 22 21 44 44 H 1.09003 * 109.47763 * 181.14417 * 23 22 21 45 45 H 1.09004 * 109.52458 * 182.48849 * 24 23 22 46 46 H 1.09002 * 109.57960 * 62.33186 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7573 -0.1293 2.5240 6 6 2.9544 0.6661 2.9772 7 1 3.8229 0.7451 2.3401 8 6 2.9414 1.2920 4.2056 9 7 1.8840 1.1953 4.9816 10 14 4.4254 2.2773 4.7677 11 1 4.2797 3.6874 4.3254 12 1 4.5187 2.2303 6.2490 13 1 5.6577 1.6976 4.1756 14 6 2.7076 -1.8424 1.0750 15 8 2.9816 -2.2738 -0.0283 16 6 3.1297 -2.5798 2.2811 17 6 3.7215 -3.8107 2.2980 18 7 3.9487 -4.1170 3.5911 19 6 4.5729 -5.3398 4.1024 20 6 5.6578 -5.8076 3.1274 21 6 6.2480 -7.1285 3.6286 22 8 5.2052 -8.0964 3.7618 23 6 4.1878 -7.7330 4.6973 24 6 3.5134 -6.4378 4.2380 25 7 3.4725 -3.0403 4.3526 26 7 2.9937 -2.1555 3.5491 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.8846 0.5221 2.4779 35 1 1.5701 -0.9382 3.2300 36 1 1.8746 1.6359 5.8457 37 1 3.9649 -4.4198 1.4399 38 1 5.0192 -5.1415 5.0768 39 1 5.2205 -5.9568 2.1401 40 1 6.4439 -5.0548 3.0687 41 1 6.7219 -6.9690 4.5971 42 1 6.9897 -7.4889 2.9157 43 1 4.6348 -7.5816 5.6798 44 1 3.4454 -8.5291 4.7543 45 1 2.7673 -6.1352 4.9728 46 1 3.0307 -6.5992 3.2741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645794868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:06 Heat of formation + Delta-G solvation = 2.344791 kcal Electronic energy + Delta-G solvation = -28425.626609 eV Core-core repulsion = 24545.219355 eV Total energy + Delta-G solvation = -3880.407254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.16654 -40.68673 -40.19359 -37.41174 -36.39917 -34.77105 -33.19563 -32.51405 -32.19117 -31.31175 -29.05789 -27.94699 -26.58827 -25.18583 -24.81573 -24.46262 -23.25736 -22.09406 -21.10895 -20.11544 -18.83664 -18.33977 -17.64163 -17.27293 -17.18877 -16.79546 -16.49400 -16.18748 -15.85713 -15.74069 -15.58139 -14.99010 -14.88442 -14.77042 -14.62991 -14.19237 -13.85234 -13.50854 -13.45945 -13.25678 -13.07002 -12.92956 -12.76793 -12.69203 -12.64992 -12.49384 -12.25547 -12.19334 -12.16068 -11.67891 -11.55883 -11.46161 -11.30969 -11.09663 -10.94092 -10.71800 -10.37379 -10.19217 -9.37186 -8.03606 -6.09037 0.24723 0.89033 1.15721 1.37685 1.39503 1.47390 2.26090 2.40158 2.50869 2.88590 3.18818 3.30001 3.41295 3.48281 3.69023 3.78925 3.82399 3.99913 4.09095 4.16810 4.23691 4.26077 4.29910 4.44958 4.49837 4.58619 4.63729 4.72294 4.76381 4.77552 4.84370 4.91304 4.96147 4.98599 5.01654 5.08247 5.20031 5.34932 5.51368 5.56131 5.59367 5.87664 5.97175 6.17034 6.28226 6.58180 6.93228 7.15104 7.36415 7.56086 9.04205 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012983 B = 0.004113 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.085056 B = 6806.272706 C = 8131.153659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.126 3.874 3 C -0.142 4.142 4 N -0.582 5.582 5 C 0.251 3.749 6 C -0.499 4.499 7 H 0.035 0.965 8 C 0.030 3.970 9 N -0.916 5.916 10 Si 0.937 3.063 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.283 1.283 14 C 0.594 3.406 15 O -0.589 6.589 16 C -0.124 4.124 17 C 0.101 3.899 18 N -0.349 5.349 19 C 0.141 3.859 20 C -0.165 4.165 21 C 0.069 3.931 22 O -0.394 6.394 23 C 0.070 3.930 24 C -0.162 4.162 25 N -0.113 5.113 26 N -0.175 5.175 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.037 0.963 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.016 0.984 35 H 0.051 0.949 36 H 0.260 0.740 37 H 0.228 0.772 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.122 0.878 43 H 0.071 0.929 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.066 -16.983 -3.486 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.023 3.977 3 C -0.200 4.200 4 N -0.310 5.310 5 C 0.130 3.870 6 C -0.538 4.538 7 H 0.054 0.946 8 C -0.169 4.169 9 N -0.557 5.557 10 Si 0.764 3.236 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.208 1.208 14 C 0.381 3.619 15 O -0.472 6.472 16 C -0.264 4.264 17 C -0.057 4.057 18 N -0.133 5.133 19 C 0.041 3.959 20 C -0.204 4.204 21 C -0.008 4.008 22 O -0.313 6.313 23 C -0.007 4.007 24 C -0.201 4.201 25 N -0.092 5.092 26 N -0.047 5.047 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.244 0.756 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.090 0.910 44 H 0.135 0.865 45 H 0.099 0.901 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.931 -16.740 -2.507 17.631 hybrid contribution 0.786 0.891 -0.009 1.188 sum 5.717 -15.849 -2.516 17.036 Atomic orbital electron populations 1.22062 0.93709 1.01908 1.03005 1.21193 0.95155 0.93633 0.87693 1.21962 1.00373 0.95190 1.02479 1.48265 1.51648 1.21441 1.09654 1.19350 0.95401 0.94324 0.77935 1.21245 1.00879 1.30041 1.01658 0.94630 1.25326 0.97651 0.97493 0.96427 1.70004 1.29889 1.44846 1.10914 0.85892 0.80759 0.79567 0.77340 1.19750 1.21083 1.20839 1.17054 0.77686 0.80854 0.86297 1.90635 1.59786 1.70239 1.26553 1.21621 1.14271 0.97641 0.92845 1.23450 0.96414 0.96042 0.89813 1.50999 1.41117 1.16364 1.04855 1.21993 0.94286 0.79174 1.00446 1.22721 0.97940 1.00191 0.99561 1.22685 0.89613 0.85977 1.02547 1.87968 1.35414 1.44511 1.63401 1.22658 0.90671 0.95189 0.92202 1.22659 0.98102 0.95155 1.04142 1.82042 1.17390 0.92596 1.17203 1.75344 1.10118 1.18390 1.00828 0.93261 0.88791 0.93081 0.89234 0.94356 0.89365 0.93096 0.96566 0.93140 0.93112 0.75615 0.86471 0.89313 0.89136 0.91126 0.86050 0.91032 0.86483 0.90089 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.26 71.98 0.67 -4.10 16 2 C 0.13 4.77 3.23 44.99 0.15 4.91 16 3 C -0.14 -5.17 8.65 71.98 0.62 -4.55 16 4 N -0.58 -26.39 2.37 -805.88 -1.91 -28.31 16 5 C 0.25 12.99 3.91 85.63 0.33 13.33 16 6 C -0.50 -27.76 7.42 25.60 0.19 -27.57 16 7 H 0.04 2.05 7.81 -2.91 -0.02 2.03 16 8 C 0.03 1.71 5.46 84.65 0.46 2.18 16 9 N -0.92 -54.04 13.29 21.45 0.28 -53.76 16 10 Si 0.94 45.57 29.54 68.60 2.03 47.60 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 13 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 14 C 0.59 26.76 7.61 86.69 0.66 27.42 16 15 O -0.59 -26.49 16.21 -4.00 -0.06 -26.55 16 16 C -0.12 -5.28 6.67 40.82 0.27 -5.01 16 17 C 0.10 3.22 10.40 83.85 0.87 4.09 16 18 N -0.35 -10.53 3.55 -325.96 -1.16 -11.69 16 19 C 0.14 2.75 3.32 45.11 0.15 2.90 16 20 C -0.17 -2.36 5.15 30.69 0.16 -2.20 16 21 C 0.07 0.74 6.84 72.02 0.49 1.23 16 22 O -0.39 -5.71 10.77 -148.98 -1.60 -7.32 16 23 C 0.07 0.83 6.84 72.01 0.49 1.32 16 24 C -0.16 -2.65 5.75 30.68 0.18 -2.47 16 25 N -0.11 -4.71 13.78 37.02 0.51 -4.20 16 26 N -0.17 -8.32 8.05 -50.00 -0.40 -8.72 16 27 H 0.05 1.72 6.91 -2.39 -0.02 1.71 16 28 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 3.35 6.91 -2.39 -0.02 3.33 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.05 2.09 7.08 -2.39 -0.02 2.07 16 34 H 0.02 0.89 6.49 -2.39 -0.02 0.87 16 35 H 0.05 2.85 5.33 -2.39 -0.01 2.84 16 36 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.23 5.38 7.27 -2.91 -0.02 5.36 16 38 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.09 1.25 7.08 -2.39 -0.02 1.23 16 40 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 46 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.29 370.27 4.35 -68.94 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.98 Total: 12.53 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 5.69 Total: 11.47 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -2.68 Total: -106.67 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.67 Total: -33.87 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.29 4.35 -68.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645794868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.283 kcal (2) G-P(sol) polarization free energy of solvation -73.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds