Wall clock time and date at job start Tue Mar 31 2020 12:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47104 * 2 1 4 4 H 1.09003 * 109.47008 * 54.99214 * 3 2 1 5 5 C 1.53001 * 109.46952 * 294.99875 * 3 2 1 6 6 N 1.46494 * 109.47293 * 174.99828 * 3 2 1 7 7 N 1.40078 * 125.97451 * 60.25971 * 6 3 2 8 8 C 1.31214 * 108.16732 * 180.19185 * 7 6 3 9 9 N 1.40193 * 125.97157 * 179.85430 * 8 7 6 10 10 C 1.34772 * 119.99956 * 179.69492 * 9 8 7 11 11 O 1.21590 * 120.00525 * 359.97438 * 10 9 8 12 12 N 1.34785 * 119.99941 * 179.97438 * 10 9 8 13 13 C 1.47576 * 134.49390 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.11846 * 155.36116 * 13 12 10 15 15 O 1.42894 * 113.74258 * 269.15648 * 14 13 12 16 16 C 1.50696 * 113.73834 * 137.95019 * 14 13 12 17 17 H 1.07999 * 120.00319 * 1.93267 * 16 14 13 18 18 C 1.37885 * 119.99717 * 181.92651 * 16 14 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47805 * 134.45494 * 359.86902 * 12 10 9 25 25 C 1.40398 * 108.05529 * 359.59445 * 8 7 6 26 26 C 1.34967 * 125.97599 * 240.00199 * 6 3 2 27 27 C 1.50695 * 126.06895 * 359.97043 * 26 6 3 28 28 H 1.08993 * 109.47080 * 300.00243 * 1 2 3 29 29 H 1.09006 * 109.46760 * 59.99989 * 1 2 3 30 30 H 1.08999 * 109.46522 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47477 * 240.00081 * 2 1 3 32 32 H 1.08995 * 109.47003 * 119.99320 * 2 1 3 33 33 H 1.09005 * 109.47313 * 59.99795 * 5 3 2 34 34 H 1.08992 * 109.47318 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47139 * 300.00157 * 5 3 2 36 36 H 0.97004 * 120.00160 * 359.69000 * 9 8 7 37 37 H 1.08999 * 113.76805 * 41.06190 * 13 12 10 38 38 H 1.09001 * 113.77518 * 269.66882 * 13 12 10 39 39 H 0.96701 * 113.99575 * 178.07128 * 15 14 13 40 40 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 41 41 H 1.09008 * 113.77106 * 90.37414 * 24 12 10 42 42 H 1.08997 * 113.84172 * 318.91386 * 24 12 10 43 43 H 1.08002 * 126.06606 * 180.26153 * 25 8 7 44 44 H 1.08996 * 109.47263 * 269.97756 * 27 26 6 45 45 H 1.09001 * 109.47044 * 29.98169 * 27 26 6 46 46 H 1.09002 * 109.46868 * 149.97962 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 7 3.5000 1.4444 0.1204 7 7 4.4004 0.8546 -0.7762 8 6 5.6168 1.0617 -0.3300 9 7 6.8024 0.6277 -0.9394 10 6 7.9932 0.9143 -0.3770 11 8 8.0393 1.5495 0.6588 12 7 9.1331 0.4966 -0.9626 13 6 10.5678 0.6232 -0.6409 14 6 10.7610 -0.6546 -1.4774 15 8 10.6760 -1.8599 -0.7146 16 6 11.9683 -0.6132 -2.3782 17 1 12.6198 0.2481 -2.3689 18 6 12.2413 -1.6751 -3.2143 19 7 13.2953 -1.6392 -4.0002 20 14 11.1142 -3.1645 -3.2308 21 1 11.5862 -4.1537 -2.2288 22 1 9.7305 -2.7421 -2.8957 23 1 11.1298 -3.7820 -4.5813 24 6 9.4471 -0.2740 -2.1841 25 6 5.5238 1.7990 0.8612 26 6 4.2131 2.0187 1.1120 27 6 3.6489 2.7712 2.2895 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 0.5489 2.1252 -1.3970 34 1 1.9982 3.1543 -1.3073 35 1 2.0699 1.5875 -2.1492 36 1 6.7658 0.1212 -1.7659 37 1 10.7937 0.4937 0.4176 38 1 11.0386 1.5064 -1.0726 39 1 10.7675 -2.6658 -1.2412 40 1 13.4875 -2.3864 -4.5881 41 1 9.5882 0.3452 -3.0701 42 1 8.7800 -1.1187 -2.3559 43 1 6.3520 2.1318 1.4693 44 1 3.5570 3.8271 2.0356 45 1 2.6665 2.3707 2.5397 46 1 4.3153 2.6598 3.1449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645966283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:01 Heat of formation + Delta-G solvation = 51.774486 kcal Electronic energy + Delta-G solvation = -27425.493670 eV Core-core repulsion = 23547.229849 eV Total energy + Delta-G solvation = -3878.263821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38060 -39.93309 -38.13997 -36.58282 -34.48737 -34.39503 -32.56573 -32.07265 -31.06131 -29.17305 -28.23650 -27.02881 -25.77955 -25.37180 -24.66443 -22.11466 -21.04694 -20.18768 -19.64902 -19.07047 -17.66600 -17.15561 -16.86944 -16.34243 -15.98673 -15.62980 -15.27535 -15.03878 -14.89108 -14.02667 -13.96463 -13.69297 -13.59504 -13.34631 -13.22761 -13.04788 -12.83034 -12.76755 -12.66106 -12.42349 -12.36190 -12.21551 -12.10864 -11.78487 -11.38608 -11.25869 -11.15272 -10.98270 -10.62714 -10.47731 -10.43969 -10.14966 -9.85450 -9.37295 -9.05282 -8.74492 -8.55498 -8.26028 -7.83434 -6.43776 -4.50232 1.88957 2.13069 2.85583 2.93975 2.98432 3.01653 3.14063 3.75368 4.01568 4.06987 4.23595 4.48854 4.54643 4.65741 4.69700 4.86978 4.95133 4.99882 5.06407 5.15606 5.29971 5.31214 5.36586 5.53555 5.56341 5.61395 5.62089 5.64754 5.77007 5.92018 5.92793 5.98776 6.02435 6.03597 6.14743 6.28681 6.33180 6.50966 6.58659 7.04656 7.15373 7.17856 7.28662 7.92824 8.01697 8.39759 8.50350 8.60491 8.86836 9.13548 10.68271 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020797 B = 0.002773 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.033444 B =10095.136293 C =10892.495897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.166 3.834 4 H 0.099 0.901 5 C -0.162 4.162 6 N -0.366 5.366 7 N -0.329 5.329 8 C 0.327 3.673 9 N -0.649 5.649 10 C 0.733 3.267 11 O -0.580 6.580 12 N -0.649 5.649 13 C 0.152 3.848 14 C 0.197 3.803 15 O -0.552 6.552 16 C -0.536 4.536 17 H 0.092 0.908 18 C 0.080 3.920 19 N -0.875 5.875 20 Si 0.858 3.142 21 H -0.267 1.267 22 H -0.256 1.256 23 H -0.283 1.283 24 C 0.060 3.940 25 C -0.262 4.262 26 C 0.081 3.919 27 C -0.089 4.089 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.409 0.591 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.352 0.648 40 H 0.271 0.729 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.172 0.828 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.536 5.312 6.427 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.064 3.936 4 H 0.117 0.883 5 C -0.219 4.219 6 N -0.151 5.151 7 N -0.159 5.159 8 C 0.071 3.929 9 N -0.300 5.300 10 C 0.436 3.564 11 O -0.458 6.458 12 N -0.386 5.386 13 C 0.030 3.970 14 C 0.155 3.845 15 O -0.363 6.363 16 C -0.574 4.574 17 H 0.110 0.890 18 C -0.125 4.125 19 N -0.511 5.511 20 Si 0.686 3.314 21 H -0.193 1.193 22 H -0.181 1.181 23 H -0.210 1.210 24 C -0.063 4.063 25 C -0.292 4.292 26 C -0.045 4.045 27 C -0.147 4.147 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.244 0.756 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.204 0.796 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.189 0.811 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.377 5.645 6.682 25.899 hybrid contribution -0.002 -1.258 -0.631 1.407 sum -24.379 4.387 6.051 25.499 Atomic orbital electron populations 1.21804 0.94624 1.02379 1.02060 1.21869 0.96157 0.95307 1.03757 1.21260 0.74622 0.97816 0.99930 0.88320 1.22170 1.01753 1.00951 0.97076 1.48191 1.05131 1.43839 1.17919 1.77263 0.96847 1.25703 1.16128 1.18806 0.85567 0.95743 0.92796 1.41658 1.01850 1.58351 1.28103 1.15186 0.78874 0.79223 0.83094 1.90788 1.85331 1.45381 1.24303 1.49290 1.04705 1.57087 1.27555 1.23218 0.75091 0.97670 1.01045 1.20529 0.91889 0.83035 0.88997 1.86477 1.95727 1.15208 1.38865 1.21212 1.09192 1.06245 1.20708 0.88972 1.25008 0.94824 0.98045 0.94647 1.69856 1.25677 1.31967 1.23580 0.87351 0.81917 0.83899 0.78210 1.19312 1.18143 1.20963 1.24725 0.98650 0.94079 0.88856 1.21620 0.96046 1.10554 1.00988 1.21085 0.91766 0.98770 0.92898 1.20417 1.01039 0.99150 0.94094 0.92545 0.92087 0.92091 0.90452 0.91474 0.90756 0.92178 0.91038 0.75611 0.90374 0.88666 0.79612 0.91875 0.88626 0.91466 0.81055 0.90352 0.91461 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 37.16 0.36 -0.50 16 2 C -0.13 -1.11 5.66 -26.73 -0.15 -1.27 16 3 C 0.17 1.47 3.11 -67.93 -0.21 1.26 16 4 H 0.10 0.65 6.65 -51.93 -0.35 0.31 16 5 C -0.16 -1.31 9.20 37.16 0.34 -0.97 16 6 N -0.37 -4.73 3.28 -50.71 -0.17 -4.89 16 7 N -0.33 -5.26 12.44 31.44 0.39 -4.87 16 8 C 0.33 5.72 8.11 -154.36 -1.25 4.47 16 9 N -0.65 -11.51 5.45 -15.51 -0.08 -11.59 16 10 C 0.73 14.80 8.73 -86.91 -0.76 14.04 16 11 O -0.58 -12.84 14.20 5.29 0.08 -12.77 16 12 N -0.65 -12.97 3.61 -183.86 -0.66 -13.63 16 13 C 0.15 3.09 8.23 -2.97 -0.02 3.07 16 14 C 0.20 4.38 1.06 -90.84 -0.10 4.28 16 15 O -0.55 -12.81 13.35 -35.23 -0.47 -13.28 16 16 C -0.54 -13.52 9.19 -34.44 -0.32 -13.84 16 17 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 18 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.88 -24.18 13.96 55.43 0.77 -23.41 16 20 Si 0.86 18.58 24.31 -169.99 -4.13 14.45 16 21 H -0.27 -5.67 7.05 56.52 0.40 -5.28 16 22 H -0.26 -5.16 5.16 56.52 0.29 -4.87 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.06 1.17 6.93 -2.83 -0.02 1.15 16 25 C -0.26 -4.36 9.52 -39.83 -0.38 -4.74 16 26 C 0.08 1.06 6.92 -82.28 -0.57 0.50 16 27 C -0.09 -0.74 9.94 36.00 0.36 -0.38 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.42 6.57 -51.93 -0.34 0.08 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.41 6.49 8.43 -40.82 -0.34 6.15 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.10 1.80 8.09 -51.93 -0.42 1.37 16 39 H 0.35 7.79 3.57 45.56 0.16 7.95 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.10 1.77 8.09 -51.92 -0.42 1.35 16 42 H 0.07 1.25 6.83 -51.93 -0.35 0.90 16 43 H 0.17 3.12 5.91 -52.49 -0.31 2.81 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.42 7.08 -51.93 -0.37 0.05 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -31.29 369.09 -8.09 -39.38 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -6.56 Total: 16.00 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -2.82 Total: 9.05 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.25 Total: -58.39 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.40 Total: -26.05 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.13 Total: 14.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.29 -8.09 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645966283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.150 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds