Wall clock time and date at job start Tue Mar 31 2020 12:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47104 * 2 1 4 4 H 1.09003 * 109.47008 * 54.99214 * 3 2 1 5 5 C 1.53001 * 109.46952 * 294.99875 * 3 2 1 6 6 N 1.46494 * 109.47293 * 174.99828 * 3 2 1 7 7 N 1.40078 * 125.97451 * 60.25971 * 6 3 2 8 8 C 1.31214 * 108.16732 * 180.19185 * 7 6 3 9 9 N 1.40193 * 125.97157 * 179.85430 * 8 7 6 10 10 C 1.34772 * 119.99956 * 179.69492 * 9 8 7 11 11 O 1.21590 * 120.00525 * 359.97438 * 10 9 8 12 12 N 1.34785 * 119.99941 * 179.97438 * 10 9 8 13 13 C 1.47576 * 134.49390 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.11846 * 155.36116 * 13 12 10 15 15 O 1.42894 * 113.74258 * 269.15648 * 14 13 12 16 16 C 1.50696 * 113.73834 * 137.95019 * 14 13 12 17 17 H 1.07999 * 120.00319 * 1.93267 * 16 14 13 18 18 C 1.37885 * 119.99717 * 181.92651 * 16 14 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47805 * 134.45494 * 359.86902 * 12 10 9 25 25 C 1.40398 * 108.05529 * 359.59445 * 8 7 6 26 26 C 1.34967 * 125.97599 * 240.00199 * 6 3 2 27 27 C 1.50695 * 126.06895 * 359.97043 * 26 6 3 28 28 H 1.08993 * 109.47080 * 300.00243 * 1 2 3 29 29 H 1.09006 * 109.46760 * 59.99989 * 1 2 3 30 30 H 1.08999 * 109.46522 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47477 * 240.00081 * 2 1 3 32 32 H 1.08995 * 109.47003 * 119.99320 * 2 1 3 33 33 H 1.09005 * 109.47313 * 59.99795 * 5 3 2 34 34 H 1.08992 * 109.47318 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47139 * 300.00157 * 5 3 2 36 36 H 0.97004 * 120.00160 * 359.69000 * 9 8 7 37 37 H 1.08999 * 113.76805 * 41.06190 * 13 12 10 38 38 H 1.09001 * 113.77518 * 269.66882 * 13 12 10 39 39 H 0.96701 * 113.99575 * 178.07128 * 15 14 13 40 40 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 41 41 H 1.09008 * 113.77106 * 90.37414 * 24 12 10 42 42 H 1.08997 * 113.84172 * 318.91386 * 24 12 10 43 43 H 1.08002 * 126.06606 * 180.26153 * 25 8 7 44 44 H 1.08996 * 109.47263 * 269.97756 * 27 26 6 45 45 H 1.09001 * 109.47044 * 29.98169 * 27 26 6 46 46 H 1.09002 * 109.46868 * 149.97962 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 7 3.5000 1.4444 0.1204 7 7 4.4004 0.8546 -0.7762 8 6 5.6168 1.0617 -0.3300 9 7 6.8024 0.6277 -0.9394 10 6 7.9932 0.9143 -0.3770 11 8 8.0393 1.5495 0.6588 12 7 9.1331 0.4966 -0.9626 13 6 10.5678 0.6232 -0.6409 14 6 10.7610 -0.6546 -1.4774 15 8 10.6760 -1.8599 -0.7146 16 6 11.9683 -0.6132 -2.3782 17 1 12.6198 0.2481 -2.3689 18 6 12.2413 -1.6751 -3.2143 19 7 13.2953 -1.6392 -4.0002 20 14 11.1142 -3.1645 -3.2308 21 1 11.5862 -4.1537 -2.2288 22 1 9.7305 -2.7421 -2.8957 23 1 11.1298 -3.7820 -4.5813 24 6 9.4471 -0.2740 -2.1841 25 6 5.5238 1.7990 0.8612 26 6 4.2131 2.0187 1.1120 27 6 3.6489 2.7712 2.2895 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 0.5489 2.1252 -1.3970 34 1 1.9982 3.1543 -1.3073 35 1 2.0699 1.5875 -2.1492 36 1 6.7658 0.1212 -1.7659 37 1 10.7937 0.4937 0.4176 38 1 11.0386 1.5064 -1.0726 39 1 10.7675 -2.6658 -1.2412 40 1 13.4875 -2.3864 -4.5881 41 1 9.5882 0.3452 -3.0701 42 1 8.7800 -1.1187 -2.3559 43 1 6.3520 2.1318 1.4693 44 1 3.5570 3.8271 2.0356 45 1 2.6665 2.3707 2.5397 46 1 4.3153 2.6598 3.1449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645966283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:00 Heat of formation + Delta-G solvation = 29.578187 kcal Electronic energy + Delta-G solvation = -27426.456174 eV Core-core repulsion = 23547.229849 eV Total energy + Delta-G solvation = -3879.226325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.53352 -41.49221 -39.72204 -37.45022 -36.23810 -35.70975 -34.54274 -33.09070 -31.93012 -30.55913 -29.34570 -27.96920 -27.42498 -27.09299 -25.42281 -23.34361 -22.16760 -21.65584 -20.75960 -20.47748 -19.47246 -18.73501 -18.18305 -17.88618 -17.17946 -16.98806 -16.41984 -16.24056 -15.97107 -15.50249 -15.35394 -15.07330 -14.91671 -14.59097 -14.53901 -14.22862 -13.96830 -13.89839 -13.76874 -13.53712 -13.36867 -13.07138 -12.96923 -12.70953 -12.68796 -12.54032 -12.43745 -12.17865 -11.94572 -11.88128 -11.58646 -11.50925 -11.43712 -11.12673 -10.94134 -10.54943 -9.85903 -9.63788 -9.13674 -8.41881 -6.54116 0.78403 0.90780 1.26482 1.28700 1.40545 1.53876 1.72744 2.18261 2.28341 2.65301 2.80697 3.27851 3.48002 3.70782 3.81760 3.83681 4.02793 4.08216 4.22347 4.33837 4.36218 4.41196 4.45447 4.50686 4.61180 4.65666 4.68863 4.72247 4.74949 4.78601 4.92024 4.93541 4.96217 5.05131 5.09757 5.10574 5.21951 5.27789 5.29291 5.40743 5.75644 5.93346 6.05346 6.20081 6.54504 6.62147 6.69889 6.94266 7.13718 7.33174 8.73246 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020797 B = 0.002773 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.033444 B =10095.136293 C =10892.495897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.154 3.846 4 H 0.134 0.866 5 C -0.157 4.157 6 N -0.356 5.356 7 N -0.344 5.344 8 C 0.301 3.699 9 N -0.642 5.642 10 C 0.732 3.268 11 O -0.604 6.604 12 N -0.649 5.649 13 C 0.152 3.848 14 C 0.187 3.813 15 O -0.560 6.560 16 C -0.540 4.540 17 H 0.060 0.940 18 C 0.029 3.971 19 N -0.923 5.923 20 Si 0.916 3.084 21 H -0.258 1.258 22 H -0.230 1.230 23 H -0.283 1.283 24 C 0.072 3.928 25 C -0.303 4.303 26 C 0.101 3.899 27 C -0.088 4.088 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.416 0.584 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.356 0.644 40 H 0.273 0.727 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.150 0.850 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.585 5.299 7.254 29.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.054 3.946 4 H 0.151 0.849 5 C -0.215 4.215 6 N -0.141 5.141 7 N -0.174 5.174 8 C 0.046 3.954 9 N -0.292 5.292 10 C 0.435 3.565 11 O -0.483 6.483 12 N -0.387 5.387 13 C 0.029 3.971 14 C 0.146 3.854 15 O -0.371 6.371 16 C -0.578 4.578 17 H 0.078 0.922 18 C -0.172 4.172 19 N -0.560 5.560 20 Si 0.741 3.259 21 H -0.184 1.184 22 H -0.154 1.154 23 H -0.209 1.209 24 C -0.050 4.050 25 C -0.334 4.334 26 C -0.028 4.028 27 C -0.146 4.146 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.252 0.748 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.209 0.791 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.167 0.833 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -28.473 5.628 7.496 29.976 hybrid contribution 1.199 -1.165 -0.834 1.868 sum -27.275 4.463 6.662 28.429 Atomic orbital electron populations 1.21780 0.92117 1.02964 1.03403 1.21816 0.98212 0.94515 1.02104 1.21789 0.72232 0.98757 1.01817 0.84856 1.22150 1.03609 1.00087 0.95618 1.48639 1.06334 1.42217 1.16934 1.77188 0.96667 1.26272 1.17294 1.19013 0.85759 0.97043 0.93613 1.41441 1.01464 1.58140 1.28191 1.15233 0.79341 0.79107 0.82847 1.90781 1.85775 1.46435 1.25354 1.49175 1.04505 1.57336 1.27647 1.23210 0.75760 0.97349 1.00753 1.20553 0.92050 0.83455 0.89330 1.86474 1.95733 1.15591 1.39322 1.21313 1.09916 1.05340 1.21237 0.92195 1.25798 0.96229 1.01141 0.94057 1.69993 1.27875 1.33258 1.24883 0.86384 0.81169 0.80045 0.78347 1.18394 1.15419 1.20929 1.24589 0.96973 0.94649 0.88802 1.21552 0.97290 1.12973 1.01538 1.21655 0.90733 0.96994 0.93383 1.20625 1.02322 0.99648 0.92000 0.90744 0.91130 0.92005 0.92763 0.92545 0.87650 0.92525 0.93310 0.74753 0.90665 0.87584 0.79143 0.91735 0.87536 0.89844 0.83271 0.88411 0.88468 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 71.98 0.70 -0.46 16 2 C -0.13 -1.86 5.66 30.60 0.17 -1.69 16 3 C 0.15 2.27 3.11 44.99 0.14 2.41 16 4 H 0.13 1.10 6.65 -2.39 -0.02 1.08 16 5 C -0.16 -2.12 9.20 71.98 0.66 -1.46 16 6 N -0.36 -8.59 3.28 -314.34 -1.03 -9.62 16 7 N -0.34 -10.81 12.44 -54.44 -0.68 -11.49 16 8 C 0.30 10.56 8.11 133.31 1.08 11.64 16 9 N -0.64 -22.75 5.45 -321.23 -1.75 -24.50 16 10 C 0.73 29.64 8.73 179.05 1.56 31.20 16 11 O -0.60 -27.28 14.20 -4.00 -0.06 -27.33 16 12 N -0.65 -25.67 3.61 -857.69 -3.10 -28.76 16 13 C 0.15 6.20 8.23 86.49 0.71 6.92 16 14 C 0.19 8.25 1.06 -10.88 -0.01 8.24 16 15 O -0.56 -25.33 13.35 -148.98 -1.99 -27.32 16 16 C -0.54 -27.72 9.19 25.60 0.24 -27.48 16 17 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 18 C 0.03 1.51 5.47 84.66 0.46 1.97 16 19 N -0.92 -52.16 13.96 21.45 0.30 -51.86 16 20 Si 0.92 37.63 24.31 68.60 1.67 39.30 16 21 H -0.26 -10.24 7.05 99.48 0.70 -9.54 16 22 H -0.23 -8.42 5.16 99.48 0.51 -7.90 16 23 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 24 C 0.07 2.74 6.93 86.45 0.60 3.34 16 25 C -0.30 -10.14 9.52 22.11 0.21 -9.93 16 26 C 0.10 2.48 6.92 41.38 0.29 2.76 16 27 C -0.09 -1.17 9.94 71.23 0.71 -0.46 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.44 6.57 -2.38 -0.02 0.43 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 0.77 6.57 -2.38 -0.02 0.75 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.42 13.00 8.43 -92.71 -0.78 12.22 16 37 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.11 4.06 8.09 -2.39 -0.02 4.04 16 39 H 0.36 15.06 3.57 -74.06 -0.26 14.80 16 40 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.11 3.81 8.09 -2.38 -0.02 3.79 16 42 H 0.08 2.89 6.83 -2.39 -0.02 2.88 16 43 H 0.15 5.64 5.91 -2.91 -0.02 5.63 16 44 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.10 0.74 7.08 -2.39 -0.02 0.72 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -70.56 369.09 0.65 -69.91 By element: Atomic # 1 Polarization: 44.90 SS G_CDS: -0.23 Total: 44.67 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 7.52 Total: 27.00 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -6.26 Total: -126.23 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -2.05 Total: -54.65 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 1.67 Total: 39.30 kcal Total: -70.56 0.65 -69.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645966283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.490 kcal (2) G-P(sol) polarization free energy of solvation -70.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds