Wall clock time and date at job start Tue Mar 31 2020 12:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47194 * 2 1 4 4 H 1.09006 * 109.47320 * 304.99731 * 3 2 1 5 5 C 1.53001 * 109.47246 * 64.99949 * 3 2 1 6 6 N 1.46504 * 109.47279 * 185.00038 * 3 2 1 7 7 N 1.40068 * 125.97455 * 299.97698 * 6 3 2 8 8 C 1.31206 * 108.17050 * 180.02562 * 7 6 3 9 9 N 1.40199 * 125.97552 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00352 * 180.02562 * 9 8 7 11 11 O 1.21590 * 119.99636 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99796 * 180.02562 * 10 9 8 13 13 C 1.47585 * 134.48714 * 180.02562 * 12 10 9 14 14 C 1.53946 * 86.11303 * 155.35829 * 13 12 10 15 15 O 1.42897 * 113.74194 * 269.15036 * 14 13 12 16 16 C 1.50705 * 113.74193 * 137.95267 * 14 13 12 17 17 H 1.08000 * 119.99753 * 17.18899 * 16 14 13 18 18 C 1.37873 * 119.99893 * 197.19270 * 16 14 13 19 19 N 1.31512 * 119.99488 * 194.35249 * 18 16 14 20 20 Si 1.86797 * 120.00211 * 14.35029 * 18 16 14 21 21 H 1.48498 * 109.46923 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47361 * 300.00177 * 20 18 16 23 23 H 1.48501 * 109.47273 * 60.00378 * 20 18 16 24 24 C 1.47807 * 134.46136 * 359.86830 * 12 10 9 25 25 C 1.40402 * 108.05673 * 0.26449 * 8 7 6 26 26 C 1.34962 * 125.97387 * 119.99590 * 6 3 2 27 27 C 1.50706 * 126.07421 * 359.97438 * 26 6 3 28 28 H 1.08998 * 109.47237 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47048 * 299.99981 * 1 2 3 30 30 H 1.09006 * 109.47200 * 59.99866 * 1 2 3 31 31 H 1.09000 * 109.47001 * 240.00249 * 2 1 3 32 32 H 1.08992 * 109.47126 * 120.00253 * 2 1 3 33 33 H 1.09000 * 109.46738 * 59.99771 * 5 3 2 34 34 H 1.08998 * 109.46892 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47188 * 300.00014 * 5 3 2 36 36 H 0.97002 * 119.99315 * 0.03013 * 9 8 7 37 37 H 1.08992 * 113.77064 * 41.05629 * 13 12 10 38 38 H 1.08997 * 113.76476 * 269.65826 * 13 12 10 39 39 H 0.96694 * 114.00247 * 174.14979 * 15 14 13 40 40 H 0.97001 * 120.00716 * 354.86282 * 19 18 16 41 41 H 1.08994 * 113.77033 * 90.37473 * 24 12 10 42 42 H 1.09004 * 113.83092 * 318.91824 * 24 12 10 43 43 H 1.08001 * 126.06912 * 179.73150 * 25 8 7 44 44 H 1.08998 * 109.47007 * 89.99795 * 27 26 6 45 45 H 1.09000 * 109.47055 * 209.99268 * 27 26 6 46 46 H 1.08996 * 109.46836 * 329.99418 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 7 3.5001 1.4442 -0.1204 7 7 4.4001 0.8506 0.7737 8 6 5.6168 1.0630 0.3310 9 7 6.8026 0.6304 0.9412 10 6 7.9935 0.9178 0.3794 11 8 8.0394 1.5520 -0.6570 12 7 9.1333 0.5014 0.9659 13 6 10.5681 0.6294 0.6449 14 6 10.8148 0.4417 2.1529 15 8 10.8496 1.6672 2.8870 16 6 11.9755 -0.4659 2.4694 17 1 12.7081 -0.6911 1.7085 18 6 12.1022 -1.0087 3.7305 19 7 13.2380 -1.5606 4.0976 20 14 10.6607 -0.9600 4.9174 21 1 11.0513 -1.6041 6.1972 22 1 10.2760 0.4516 5.1715 23 1 9.5089 -1.6884 4.3275 24 6 9.4476 -0.2643 2.1905 25 6 5.5242 1.8051 -0.8573 26 6 4.2131 2.0185 -1.1120 27 6 3.6490 2.7700 -2.2902 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.0699 1.5874 2.1491 34 1 1.9990 3.1540 1.3075 35 1 0.5489 2.1253 1.3969 36 1 6.7658 0.1241 1.7678 37 1 10.8489 1.6147 0.2731 38 1 10.9553 -0.1844 0.0318 39 1 10.9148 1.5502 3.8447 40 1 13.9615 -1.6530 3.4581 41 1 9.5047 -1.3413 2.0326 42 1 8.8356 0.0090 3.0501 43 1 6.3526 2.1429 -1.4622 44 1 3.5558 3.8260 -2.0368 45 1 4.3160 2.6591 -3.1451 46 1 2.6672 2.3684 -2.5409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645966284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:04 Heat of formation + Delta-G solvation = 42.798785 kcal Electronic energy + Delta-G solvation = -27473.320393 eV Core-core repulsion = 23594.667356 eV Total energy + Delta-G solvation = -3878.653037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38882 -39.94125 -38.10754 -36.58057 -34.40998 -34.24687 -32.64322 -32.07756 -31.06119 -29.13396 -28.17998 -27.03501 -25.83690 -25.08253 -24.55171 -22.05834 -21.02425 -20.06424 -19.65557 -19.07168 -18.01289 -17.34980 -16.87400 -16.14978 -15.67543 -15.63290 -15.29867 -15.06196 -14.78674 -14.23803 -13.95718 -13.86023 -13.59774 -13.29794 -13.18010 -13.05409 -12.81921 -12.74555 -12.56750 -12.42588 -12.25884 -12.11611 -12.05618 -11.77284 -11.38934 -11.25082 -11.15582 -10.82514 -10.49422 -10.44455 -10.43535 -10.05091 -9.62834 -9.46727 -9.05242 -8.59106 -8.51956 -8.22047 -7.84479 -6.75007 -4.48769 1.88405 2.12028 2.84471 2.92511 3.07213 3.15548 3.33754 3.73777 4.05451 4.16277 4.23138 4.48544 4.54276 4.68454 4.82143 4.86531 4.94804 4.99605 5.14120 5.15797 5.29836 5.31133 5.36299 5.46196 5.56149 5.60632 5.61508 5.64262 5.75384 5.88689 5.91672 5.92809 5.98709 6.03010 6.15128 6.24310 6.29689 6.49593 6.67683 7.03929 7.16857 7.25473 7.53060 7.91993 8.06819 8.38918 8.55526 8.69321 8.84999 9.26784 10.61546 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020599 B = 0.002848 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.994160 B = 9829.054794 C =10698.274337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.166 3.834 4 H 0.099 0.901 5 C -0.162 4.162 6 N -0.365 5.365 7 N -0.329 5.329 8 C 0.327 3.673 9 N -0.649 5.649 10 C 0.733 3.267 11 O -0.580 6.580 12 N -0.647 5.647 13 C 0.153 3.847 14 C 0.201 3.799 15 O -0.565 6.565 16 C -0.616 4.616 17 H 0.071 0.929 18 C 0.036 3.964 19 N -0.886 5.886 20 Si 1.040 2.960 21 H -0.278 1.278 22 H -0.279 1.279 23 H -0.273 1.273 24 C 0.054 3.946 25 C -0.262 4.262 26 C 0.081 3.919 27 C -0.089 4.089 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.409 0.591 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.367 0.633 40 H 0.274 0.726 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.172 0.828 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.859 4.435 -7.292 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.064 3.936 4 H 0.117 0.883 5 C -0.220 4.220 6 N -0.151 5.151 7 N -0.159 5.159 8 C 0.071 3.929 9 N -0.300 5.300 10 C 0.436 3.564 11 O -0.458 6.458 12 N -0.384 5.384 13 C 0.031 3.969 14 C 0.160 3.840 15 O -0.373 6.373 16 C -0.654 4.654 17 H 0.089 0.911 18 C -0.173 4.173 19 N -0.518 5.518 20 Si 0.868 3.132 21 H -0.204 1.204 22 H -0.206 1.206 23 H -0.199 1.199 24 C -0.069 4.069 25 C -0.292 4.292 26 C -0.045 4.045 27 C -0.147 4.147 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.244 0.756 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.216 0.784 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.189 0.811 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.219 4.307 -6.275 26.343 hybrid contribution 0.936 0.023 -1.078 1.428 sum -24.283 4.330 -7.353 25.739 Atomic orbital electron populations 1.21804 0.94623 1.02378 1.02070 1.21866 0.96162 0.95298 1.03743 1.21265 0.74597 0.97822 0.99948 0.88320 1.22171 1.01754 1.00983 0.97061 1.48193 1.05153 1.43725 1.17982 1.77258 0.96844 1.25556 1.16225 1.18802 0.85553 0.95728 0.92844 1.41663 1.01827 1.58278 1.28213 1.15206 0.78790 0.80088 0.82298 1.90789 1.85256 1.45803 1.23922 1.49297 1.04761 1.56747 1.27633 1.23160 0.74631 1.01745 0.97336 1.20378 0.90953 0.83454 0.89219 1.86382 1.96503 1.32208 1.22198 1.22176 1.10838 1.31400 1.00981 0.91071 1.25828 1.00576 0.93522 0.97340 1.70802 1.02809 1.41688 1.36537 0.84139 0.75136 0.76985 0.76947 1.20366 1.20648 1.19928 1.24741 0.98901 0.97750 0.85471 1.21618 0.96030 1.10535 1.01044 1.21085 0.91757 0.98794 0.92875 1.20418 1.01023 0.99190 0.94064 0.92089 0.92070 0.92559 0.91493 0.90433 0.91029 0.92162 0.90737 0.75606 0.90600 0.88992 0.78357 0.91503 0.88639 0.91861 0.81080 0.90339 0.89520 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.67 37.16 0.36 -0.49 16 2 C -0.13 -1.10 5.66 -26.73 -0.15 -1.25 16 3 C 0.17 1.47 3.11 -67.93 -0.21 1.26 16 4 H 0.10 0.65 6.66 -51.93 -0.35 0.31 16 5 C -0.16 -1.32 9.21 37.16 0.34 -0.98 16 6 N -0.37 -4.72 3.28 -50.70 -0.17 -4.88 16 7 N -0.33 -5.25 12.44 31.44 0.39 -4.85 16 8 C 0.33 5.73 8.11 -154.36 -1.25 4.48 16 9 N -0.65 -11.57 5.45 -15.51 -0.08 -11.65 16 10 C 0.73 14.91 8.73 -86.92 -0.76 14.15 16 11 O -0.58 -12.93 14.20 5.29 0.08 -12.85 16 12 N -0.65 -13.10 3.61 -183.90 -0.66 -13.76 16 13 C 0.15 3.19 8.23 -2.96 -0.02 3.17 16 14 C 0.20 4.51 1.07 -90.86 -0.10 4.41 16 15 O -0.56 -12.94 13.47 -35.23 -0.47 -13.42 16 16 C -0.62 -15.63 9.04 -34.44 -0.31 -15.94 16 17 H 0.07 1.94 8.06 -52.49 -0.42 1.52 16 18 C 0.04 0.92 5.44 -17.82 -0.10 0.82 16 19 N -0.89 -24.79 13.70 55.43 0.76 -24.03 16 20 Si 1.04 21.87 24.55 -169.99 -4.17 17.69 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -5.34 5.81 56.52 0.33 -5.01 16 23 H -0.27 -5.22 6.48 56.52 0.37 -4.85 16 24 C 0.05 1.07 5.22 -2.85 -0.01 1.06 16 25 C -0.26 -4.37 9.52 -39.83 -0.38 -4.75 16 26 C 0.08 1.07 6.93 -82.28 -0.57 0.50 16 27 C -0.09 -0.74 9.94 36.01 0.36 -0.38 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.31 6.56 -51.93 -0.34 -0.04 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.42 6.57 -51.93 -0.34 0.08 16 36 H 0.41 6.52 8.43 -40.82 -0.34 6.18 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 38 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 39 H 0.37 7.78 6.07 45.56 0.28 8.06 16 40 H 0.27 7.67 8.73 -40.82 -0.36 7.32 16 41 H 0.10 1.84 7.97 -51.93 -0.41 1.42 16 42 H 0.06 1.16 6.87 -51.93 -0.36 0.80 16 43 H 0.17 3.13 5.91 -52.49 -0.31 2.82 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.42 7.08 -51.93 -0.37 0.05 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -31.48 370.22 -8.02 -39.50 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -6.45 Total: 16.62 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -2.81 Total: 6.05 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.24 Total: -59.18 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.40 Total: -26.27 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.17 Total: 17.69 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.48 -8.02 -39.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645966284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.301 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds