Wall clock time and date at job start Tue Mar 31 2020 12:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47194 * 2 1 4 4 H 1.09006 * 109.47320 * 304.99731 * 3 2 1 5 5 C 1.53001 * 109.47246 * 64.99949 * 3 2 1 6 6 N 1.46504 * 109.47279 * 185.00038 * 3 2 1 7 7 N 1.40068 * 125.97455 * 299.97698 * 6 3 2 8 8 C 1.31206 * 108.17050 * 180.02562 * 7 6 3 9 9 N 1.40199 * 125.97552 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00352 * 180.02562 * 9 8 7 11 11 O 1.21590 * 119.99636 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99796 * 180.02562 * 10 9 8 13 13 C 1.47585 * 134.48714 * 180.02562 * 12 10 9 14 14 C 1.53946 * 86.11303 * 155.35829 * 13 12 10 15 15 O 1.42897 * 113.74194 * 269.15036 * 14 13 12 16 16 C 1.50705 * 113.74193 * 137.95267 * 14 13 12 17 17 H 1.08000 * 119.99753 * 17.18899 * 16 14 13 18 18 C 1.37873 * 119.99893 * 197.19270 * 16 14 13 19 19 N 1.31512 * 119.99488 * 194.35249 * 18 16 14 20 20 Si 1.86797 * 120.00211 * 14.35029 * 18 16 14 21 21 H 1.48498 * 109.46923 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47361 * 300.00177 * 20 18 16 23 23 H 1.48501 * 109.47273 * 60.00378 * 20 18 16 24 24 C 1.47807 * 134.46136 * 359.86830 * 12 10 9 25 25 C 1.40402 * 108.05673 * 0.26449 * 8 7 6 26 26 C 1.34962 * 125.97387 * 119.99590 * 6 3 2 27 27 C 1.50706 * 126.07421 * 359.97438 * 26 6 3 28 28 H 1.08998 * 109.47237 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47048 * 299.99981 * 1 2 3 30 30 H 1.09006 * 109.47200 * 59.99866 * 1 2 3 31 31 H 1.09000 * 109.47001 * 240.00249 * 2 1 3 32 32 H 1.08992 * 109.47126 * 120.00253 * 2 1 3 33 33 H 1.09000 * 109.46738 * 59.99771 * 5 3 2 34 34 H 1.08998 * 109.46892 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47188 * 300.00014 * 5 3 2 36 36 H 0.97002 * 119.99315 * 0.03013 * 9 8 7 37 37 H 1.08992 * 113.77064 * 41.05629 * 13 12 10 38 38 H 1.08997 * 113.76476 * 269.65826 * 13 12 10 39 39 H 0.96694 * 114.00247 * 174.14979 * 15 14 13 40 40 H 0.97001 * 120.00716 * 354.86282 * 19 18 16 41 41 H 1.08994 * 113.77033 * 90.37473 * 24 12 10 42 42 H 1.09004 * 113.83092 * 318.91824 * 24 12 10 43 43 H 1.08001 * 126.06912 * 179.73150 * 25 8 7 44 44 H 1.08998 * 109.47007 * 89.99795 * 27 26 6 45 45 H 1.09000 * 109.47055 * 209.99268 * 27 26 6 46 46 H 1.08996 * 109.46836 * 329.99418 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 7 3.5001 1.4442 -0.1204 7 7 4.4001 0.8506 0.7737 8 6 5.6168 1.0630 0.3310 9 7 6.8026 0.6304 0.9412 10 6 7.9935 0.9178 0.3794 11 8 8.0394 1.5520 -0.6570 12 7 9.1333 0.5014 0.9659 13 6 10.5681 0.6294 0.6449 14 6 10.8148 0.4417 2.1529 15 8 10.8496 1.6672 2.8870 16 6 11.9755 -0.4659 2.4694 17 1 12.7081 -0.6911 1.7085 18 6 12.1022 -1.0087 3.7305 19 7 13.2380 -1.5606 4.0976 20 14 10.6607 -0.9600 4.9174 21 1 11.0513 -1.6041 6.1972 22 1 10.2760 0.4516 5.1715 23 1 9.5089 -1.6884 4.3275 24 6 9.4476 -0.2643 2.1905 25 6 5.5242 1.8051 -0.8573 26 6 4.2131 2.0185 -1.1120 27 6 3.6490 2.7700 -2.2902 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.0699 1.5874 2.1491 34 1 1.9990 3.1540 1.3075 35 1 0.5489 2.1253 1.3969 36 1 6.7658 0.1241 1.7678 37 1 10.8489 1.6147 0.2731 38 1 10.9553 -0.1844 0.0318 39 1 10.9148 1.5502 3.8447 40 1 13.9615 -1.6530 3.4581 41 1 9.5047 -1.3413 2.0326 42 1 8.8356 0.0090 3.0501 43 1 6.3526 2.1429 -1.4622 44 1 3.5558 3.8260 -2.0368 45 1 4.3160 2.6591 -3.1451 46 1 2.6672 2.3684 -2.5409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645966284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:03 Heat of formation + Delta-G solvation = 19.795648 kcal Electronic energy + Delta-G solvation = -27474.317884 eV Core-core repulsion = 23594.667356 eV Total energy + Delta-G solvation = -3879.650528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.54038 -41.50315 -39.69103 -37.44170 -36.02000 -35.71437 -34.64324 -33.09274 -31.92176 -30.48698 -29.31122 -27.97275 -27.46612 -26.76723 -25.39728 -23.26452 -22.13679 -21.57784 -20.77233 -20.48317 -19.93741 -18.83961 -18.04455 -17.49624 -17.15609 -17.04125 -16.36711 -16.25759 -15.96475 -15.83108 -15.25885 -15.00188 -14.83814 -14.58158 -14.48965 -14.07340 -13.94197 -13.88892 -13.75980 -13.54861 -13.36877 -13.06292 -12.93350 -12.69874 -12.53917 -12.47658 -12.17481 -12.15512 -11.88940 -11.76919 -11.54344 -11.49850 -11.36400 -11.16223 -10.91441 -10.38145 -9.87251 -9.64551 -9.15047 -8.81915 -6.58015 0.78094 0.88595 1.42163 1.50052 1.52699 1.62943 1.75279 2.26782 2.42469 2.65046 2.91418 3.38050 3.48242 3.70736 3.73389 3.84230 4.02953 4.08212 4.20190 4.28434 4.34765 4.41869 4.42585 4.50922 4.58130 4.61788 4.63714 4.72051 4.73202 4.77793 4.93890 4.95250 4.98067 5.05539 5.09850 5.11269 5.21526 5.29044 5.41494 5.61444 5.74647 5.91422 5.94052 6.19794 6.42201 6.61212 6.92099 6.95361 7.26510 7.31712 8.53479 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020599 B = 0.002848 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.994160 B = 9829.054794 C =10698.274337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.154 3.846 4 H 0.134 0.866 5 C -0.157 4.157 6 N -0.356 5.356 7 N -0.342 5.342 8 C 0.301 3.699 9 N -0.641 5.641 10 C 0.732 3.268 11 O -0.604 6.604 12 N -0.647 5.647 13 C 0.151 3.849 14 C 0.194 3.806 15 O -0.572 6.572 16 C -0.618 4.618 17 H 0.036 0.964 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 1.070 2.930 21 H -0.289 1.289 22 H -0.247 1.247 23 H -0.237 1.237 24 C 0.065 3.935 25 C -0.303 4.303 26 C 0.101 3.899 27 C -0.088 4.088 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.417 0.583 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.374 0.626 40 H 0.258 0.742 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.149 0.851 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.374 5.309 -7.459 29.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.054 3.946 4 H 0.151 0.849 5 C -0.215 4.215 6 N -0.141 5.141 7 N -0.173 5.173 8 C 0.046 3.954 9 N -0.292 5.292 10 C 0.435 3.565 11 O -0.484 6.484 12 N -0.384 5.384 13 C 0.029 3.971 14 C 0.152 3.848 15 O -0.381 6.381 16 C -0.656 4.656 17 H 0.054 0.946 18 C -0.209 4.209 19 N -0.554 5.554 20 Si 0.889 3.111 21 H -0.215 1.215 22 H -0.172 1.172 23 H -0.161 1.161 24 C -0.057 4.057 25 C -0.334 4.334 26 C -0.028 4.028 27 C -0.146 4.146 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.253 0.747 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.225 0.775 40 H 0.068 0.932 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.166 0.834 44 H 0.115 0.885 45 H 0.109 0.891 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -29.775 5.178 -6.445 30.902 hybrid contribution 2.296 -0.208 -1.127 2.566 sum -27.479 4.969 -7.572 28.933 Atomic orbital electron populations 1.21781 0.92154 1.02974 1.03379 1.21811 0.98179 0.94450 1.02162 1.21795 0.72200 0.98818 1.01790 0.84888 1.22153 1.03615 1.00075 0.95653 1.48642 1.06359 1.42090 1.16988 1.77183 0.96630 1.26074 1.17365 1.19002 0.85748 0.97035 0.93648 1.41428 1.01383 1.58060 1.28309 1.15246 0.79270 0.79864 0.82123 1.90783 1.85715 1.46826 1.25053 1.49160 1.04464 1.56973 1.27850 1.23140 0.75486 1.01842 0.96671 1.20325 0.91348 0.83026 0.90067 1.86368 1.96574 1.32283 1.22913 1.22257 1.11227 1.31801 1.00342 0.94564 1.27272 1.01909 0.92251 0.99455 1.70946 1.03700 1.44265 1.36504 0.83855 0.73289 0.79325 0.74586 1.21522 1.17207 1.16094 1.24620 0.97044 0.97892 0.86139 1.21548 0.97264 1.12959 1.01636 1.21648 0.90720 0.97022 0.93368 1.20625 1.02347 0.99635 0.91994 0.91971 0.91153 0.90789 0.92485 0.92683 0.93263 0.92600 0.87630 0.74663 0.91126 0.88235 0.77545 0.93213 0.87792 0.89445 0.83352 0.88500 0.89116 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 71.98 0.70 -0.41 16 2 C -0.13 -1.80 5.66 30.59 0.17 -1.63 16 3 C 0.15 2.24 3.11 44.99 0.14 2.38 16 4 H 0.13 1.07 6.66 -2.38 -0.02 1.06 16 5 C -0.16 -2.11 9.21 71.98 0.66 -1.45 16 6 N -0.36 -8.49 3.28 -314.32 -1.03 -9.52 16 7 N -0.34 -10.64 12.44 -54.43 -0.68 -11.32 16 8 C 0.30 10.49 8.11 133.31 1.08 11.57 16 9 N -0.64 -22.56 5.45 -321.23 -1.75 -24.32 16 10 C 0.73 29.67 8.73 179.05 1.56 31.23 16 11 O -0.60 -27.41 14.20 -4.00 -0.06 -27.46 16 12 N -0.65 -25.72 3.61 -857.84 -3.10 -28.82 16 13 C 0.15 6.32 8.23 86.49 0.71 7.03 16 14 C 0.19 8.55 1.07 -10.89 -0.01 8.54 16 15 O -0.57 -25.57 13.47 -148.98 -2.01 -27.57 16 16 C -0.62 -31.90 9.04 25.60 0.23 -31.67 16 17 H 0.04 2.07 8.06 -2.91 -0.02 2.04 16 18 C -0.01 -0.40 5.44 84.65 0.46 0.06 16 19 N -0.92 -52.94 13.70 21.45 0.29 -52.65 16 20 Si 1.07 42.19 24.55 68.60 1.68 43.87 16 21 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.25 -8.43 5.81 99.48 0.58 -7.86 16 23 H -0.24 -7.99 6.48 99.48 0.64 -7.34 16 24 C 0.07 2.46 5.22 86.43 0.45 2.91 16 25 C -0.30 -10.13 9.52 22.11 0.21 -9.92 16 26 C 0.10 2.47 6.93 41.39 0.29 2.75 16 27 C -0.09 -1.17 9.94 71.24 0.71 -0.46 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.42 6.56 -2.39 -0.02 0.41 16 30 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.11 0.76 6.57 -2.39 -0.02 0.74 16 36 H 0.42 12.80 8.43 -92.71 -0.78 12.02 16 37 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.10 3.96 8.09 -2.39 -0.02 3.94 16 39 H 0.37 15.14 6.07 -74.06 -0.45 14.69 16 40 H 0.26 15.19 8.73 -92.71 -0.81 14.38 16 41 H 0.10 3.76 7.97 -2.39 -0.02 3.74 16 42 H 0.09 2.89 6.87 -2.38 -0.02 2.87 16 43 H 0.15 5.62 5.91 -2.91 -0.02 5.60 16 44 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.10 0.73 7.08 -2.39 -0.02 0.71 16 Total: -1.00 -71.89 370.22 0.28 -71.61 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -0.45 Total: 45.25 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 7.36 Total: 20.92 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -6.26 Total: -126.62 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -2.06 Total: -55.04 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.68 Total: 43.87 kcal Total: -71.89 0.28 -71.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645966284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.411 kcal (2) G-P(sol) polarization free energy of solvation -71.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds