Wall clock time and date at job start Tue Mar 31 2020 13:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35729 * 117.00273 * 2 1 4 4 C 1.39448 * 120.80730 * 180.02562 * 3 2 1 5 5 N 1.31959 * 119.08220 * 180.02562 * 4 3 2 6 6 C 1.32544 * 120.83710 * 0.02562 * 5 4 3 7 7 C 1.48291 * 119.11033 * 180.02562 * 6 5 4 8 8 O 1.21506 * 120.00336 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99667 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99895 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47312 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47430 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47278 * 179.97438 * 12 11 10 14 14 C 1.36936 * 119.99806 * 89.99990 * 13 12 11 15 15 H 1.07999 * 120.00105 * 217.14523 * 14 13 12 16 16 C 1.38812 * 119.99703 * 37.15061 * 14 13 12 17 17 N 1.31618 * 120.00362 * 21.26166 * 16 14 13 18 18 Si 1.86808 * 119.99652 * 201.26076 * 16 14 13 19 19 H 1.48500 * 109.46608 * 60.00078 * 18 16 14 20 20 H 1.48497 * 109.46917 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47000 * 300.00181 * 18 16 14 22 22 C 1.46497 * 119.99906 * 270.00051 * 13 12 11 23 23 C 1.53008 * 109.46896 * 114.90395 * 22 13 12 24 24 C 1.52997 * 109.47166 * 234.90250 * 22 13 12 25 25 N 1.32543 * 121.77582 * 0.27170 * 6 5 4 26 26 C 1.31956 * 120.83335 * 359.44321 * 25 6 5 27 27 H 1.08991 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47114 * 300.00792 * 1 2 3 29 29 H 1.09006 * 109.46865 * 60.00039 * 1 2 3 30 30 H 1.07997 * 120.46279 * 0.02562 * 4 3 2 31 31 H 0.96994 * 120.00067 * 0.02562 * 9 7 6 32 32 H 1.09002 * 109.47429 * 300.00470 * 10 9 7 33 33 H 1.08994 * 109.46870 * 60.00080 * 10 9 7 34 34 H 1.09002 * 109.46929 * 300.00375 * 11 10 9 35 35 H 1.09001 * 109.46799 * 59.99736 * 11 10 9 36 36 H 1.08997 * 109.46943 * 300.00233 * 12 11 10 37 37 H 1.09000 * 109.46807 * 60.00112 * 12 11 10 38 38 H 0.97000 * 119.99779 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.47207 * 354.90591 * 22 13 12 40 40 H 1.08997 * 109.47020 * 63.31047 * 23 22 13 41 41 H 1.09003 * 109.46808 * 183.30856 * 23 22 13 42 42 H 1.09000 * 109.47080 * 303.30589 * 23 22 13 43 43 H 1.08999 * 109.47244 * 61.62181 * 24 22 13 44 44 H 1.09001 * 109.47272 * 181.62341 * 24 22 13 45 45 H 1.09005 * 109.47262 * 301.61812 * 24 22 13 46 46 H 1.08000 * 120.45522 * 180.26808 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4367 1.3018 -0.0005 5 7 4.0001 2.4951 0.0000 6 6 3.2612 3.5954 0.0015 7 6 3.9345 4.9166 0.0015 8 8 5.1479 4.9802 0.0006 9 7 3.2004 6.0470 0.0025 10 6 3.8656 7.3523 0.0031 11 6 2.8120 8.4617 0.0049 12 6 3.5066 9.8249 0.0061 13 7 2.4976 10.8871 0.0072 14 6 2.0263 11.3824 1.1936 15 1 0.9862 11.6573 1.2889 16 6 2.8853 11.5313 2.2738 17 7 4.1843 11.6077 2.0760 18 14 2.1976 11.6231 4.0082 19 1 1.4523 10.3751 4.3118 20 1 3.3134 11.7817 4.9753 21 1 1.2806 12.7861 4.1162 22 6 1.9930 11.4194 -1.2610 23 6 0.5064 11.0847 -1.3990 24 6 2.1785 12.9379 -1.2866 25 7 1.9366 3.5466 0.0079 26 6 1.3024 2.3895 0.0020 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 4.0447 0.4093 -0.0014 31 1 2.2318 5.9963 0.0037 32 1 4.4889 7.4422 0.8928 33 1 4.4879 7.4433 -0.8871 34 1 2.1884 8.3719 -0.8847 35 1 2.1899 8.3704 0.8953 36 1 4.1298 9.9143 0.8958 37 1 4.1289 9.9163 -0.8841 38 1 4.7845 11.7121 2.8308 39 1 2.5445 10.9720 -2.0879 40 1 -0.0528 11.5805 -0.6056 41 1 0.1450 11.4290 -2.3681 42 1 0.3681 10.0063 -1.3219 43 1 3.2400 13.1755 -1.2172 44 1 1.7769 13.3373 -2.2179 45 1 1.6506 13.3827 -0.4430 46 1 0.2229 2.3569 0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691739869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:59 Heat of formation + Delta-G solvation = -3.736038 kcal Electronic energy + Delta-G solvation = -26637.432906 eV Core-core repulsion = 22756.761968 eV Total energy + Delta-G solvation = -3880.670938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.78391 -39.63575 -38.64320 -36.74921 -35.11199 -34.20902 -32.49432 -31.92903 -31.17496 -28.91084 -28.25519 -26.16683 -25.80366 -25.06469 -24.39233 -22.97474 -20.97048 -20.76456 -19.49517 -18.82416 -18.52959 -18.15031 -16.69277 -16.33133 -15.70941 -15.63584 -15.41910 -15.08891 -14.93476 -14.55871 -14.18236 -14.09315 -13.81664 -13.50494 -13.23764 -12.91501 -12.82514 -12.37940 -12.18006 -11.89529 -11.68676 -11.47632 -11.40395 -11.39081 -11.27658 -10.93382 -10.72331 -10.61386 -10.42667 -10.21600 -10.01655 -9.86593 -9.68340 -9.54090 -9.47779 -9.25063 -8.81298 -8.43137 -6.51554 -5.73719 -3.31365 0.15985 0.56380 2.40411 2.55436 2.86818 3.38596 3.45600 3.46697 3.59030 3.59650 3.71277 4.13559 4.21677 4.50803 4.52157 4.52970 4.77250 4.89874 5.16661 5.26694 5.39983 5.55177 5.70141 5.81976 5.97725 6.07750 6.20353 6.22228 6.33845 6.42693 6.44427 6.47541 6.56468 6.71267 6.76011 6.76848 6.82181 6.83661 7.16202 7.24817 7.37094 7.38195 7.73113 7.74463 7.87916 8.25501 8.57616 9.24636 9.87604 10.46164 11.26156 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.002475 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.008456 B =11311.211917 C =11528.529592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.298 6.298 3 C 0.040 3.960 4 C 0.123 3.877 5 N -0.428 5.428 6 C 0.246 3.754 7 C 0.580 3.420 8 O -0.510 6.510 9 N -0.701 5.701 10 C 0.120 3.880 11 C -0.145 4.145 12 C 0.151 3.849 13 N -0.579 5.579 14 C -0.252 4.252 15 H 0.059 0.941 16 C 0.012 3.988 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.162 3.838 23 C -0.154 4.154 24 C -0.145 4.145 25 N -0.455 5.455 26 C 0.065 3.935 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.184 0.816 31 H 0.409 0.591 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.025 0.975 38 H 0.255 0.745 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.034 0.966 42 H 0.044 0.956 43 H 0.048 0.952 44 H 0.029 0.971 45 H 0.057 0.943 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.622 -21.232 -6.051 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.208 6.208 3 C -0.011 4.011 4 C -0.046 4.046 5 N -0.142 5.142 6 C -0.022 4.022 7 C 0.361 3.639 8 O -0.382 6.382 9 N -0.353 5.353 10 C -0.003 4.003 11 C -0.186 4.186 12 C 0.023 3.977 13 N -0.299 5.299 14 C -0.382 4.382 15 H 0.076 0.924 16 C -0.188 4.188 17 N -0.529 5.529 18 Si 0.723 3.277 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.209 1.209 22 C 0.055 3.945 23 C -0.213 4.213 24 C -0.204 4.204 25 N -0.172 5.172 26 C -0.103 4.103 27 H 0.127 0.873 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.201 0.799 31 H 0.245 0.755 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.021 -20.380 -5.930 22.356 hybrid contribution -1.669 -0.867 1.016 2.138 sum -8.690 -21.247 -4.914 23.475 Atomic orbital electron populations 1.23272 0.77224 1.05113 1.02062 1.86091 1.22293 1.24884 1.87563 1.21236 0.95264 0.86893 0.97707 1.22920 0.89264 0.96363 0.96086 1.68302 1.39768 0.97554 1.08617 1.22917 0.86003 0.94505 0.98821 1.17127 0.86373 0.81885 0.78502 1.90822 1.12664 1.86198 1.48540 1.45990 1.11040 1.05456 1.72864 1.21599 0.96402 0.79919 1.02340 1.22512 0.97975 0.96467 1.01633 1.20820 0.91281 0.83645 1.01919 1.43846 1.47391 1.38021 1.00631 1.18847 0.92362 1.38714 0.88237 0.92368 1.25150 0.95275 0.99526 0.98882 1.69968 1.01959 1.50937 1.30018 0.86534 0.78069 0.78130 0.85010 1.21021 1.21697 1.20875 1.20412 0.92461 0.92664 0.88963 1.22210 0.99364 1.00491 0.99283 1.22036 1.01328 0.97841 0.99205 1.68163 1.10299 1.29050 1.09678 1.23467 1.01388 0.86621 0.98865 0.87258 0.91884 0.91896 0.79888 0.75540 0.91054 0.91551 0.93120 0.91531 0.88498 0.95670 0.93540 0.93709 0.92994 0.94675 0.93735 0.93329 0.95247 0.92382 0.80544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.84 101.05 0.99 1.05 16 2 O -0.30 -1.95 10.51 -18.89 -0.20 -2.15 16 3 C 0.04 0.34 6.75 -38.68 -0.26 0.08 16 4 C 0.12 1.21 11.28 -17.05 -0.19 1.02 16 5 N -0.43 -5.92 10.11 -11.03 -0.11 -6.03 16 6 C 0.25 3.57 7.59 -157.04 -1.19 2.38 16 7 C 0.58 9.78 7.84 -12.12 -0.10 9.69 16 8 O -0.51 -10.25 16.86 5.36 0.09 -10.16 16 9 N -0.70 -10.87 5.54 -61.11 -0.34 -11.21 16 10 C 0.12 2.06 5.67 -4.04 -0.02 2.03 16 11 C -0.15 -2.68 5.65 -26.73 -0.15 -2.83 16 12 C 0.15 3.35 5.28 -4.04 -0.02 3.33 16 13 N -0.58 -13.64 2.37 -165.66 -0.39 -14.03 16 14 C -0.25 -6.54 8.04 -15.06 -0.12 -6.66 16 15 H 0.06 1.53 7.14 -52.49 -0.37 1.16 16 16 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 17 N -0.89 -24.94 11.43 55.49 0.63 -24.31 16 18 Si 0.89 21.30 29.60 -169.99 -5.03 16.26 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.16 3.31 3.37 -67.93 -0.23 3.08 16 23 C -0.15 -2.79 9.19 37.16 0.34 -2.45 16 24 C -0.15 -2.93 9.11 37.16 0.34 -2.59 16 25 N -0.46 -5.47 9.55 -11.03 -0.11 -5.58 16 26 C 0.06 0.56 10.31 -17.05 -0.18 0.39 16 27 H 0.11 0.12 8.14 -51.93 -0.42 -0.31 16 28 H 0.06 0.13 7.70 -51.93 -0.40 -0.27 16 29 H 0.06 0.12 7.71 -51.93 -0.40 -0.28 16 30 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.41 5.64 7.77 -40.82 -0.32 5.32 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.10 2.47 5.48 -51.93 -0.28 2.19 16 37 H 0.02 0.54 7.88 -51.93 -0.41 0.13 16 38 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.04 0.87 7.77 -51.93 -0.40 0.47 16 40 H 0.05 0.99 7.32 -51.93 -0.38 0.61 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 1.26 7.50 -51.93 -0.39 0.87 16 46 H 0.18 0.88 6.47 -52.49 -0.34 0.54 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -32.32 384.56 -7.59 -39.91 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.06 Total: 2.76 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -0.87 Total: 8.73 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.31 Total: -61.15 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.11 Total: -12.31 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.32 -7.59 -39.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691739869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.175 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds