Wall clock time and date at job start Tue Mar 31 2020 13:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35729 * 117.00273 * 2 1 4 4 C 1.39448 * 120.80730 * 180.02562 * 3 2 1 5 5 N 1.31959 * 119.08220 * 180.02562 * 4 3 2 6 6 C 1.32544 * 120.83710 * 0.02562 * 5 4 3 7 7 C 1.48291 * 119.11033 * 180.02562 * 6 5 4 8 8 O 1.21506 * 120.00336 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99667 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99895 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47312 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47430 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47278 * 179.97438 * 12 11 10 14 14 C 1.36936 * 119.99806 * 89.99990 * 13 12 11 15 15 H 1.07999 * 120.00105 * 217.14523 * 14 13 12 16 16 C 1.38812 * 119.99703 * 37.15061 * 14 13 12 17 17 N 1.31618 * 120.00362 * 21.26166 * 16 14 13 18 18 Si 1.86808 * 119.99652 * 201.26076 * 16 14 13 19 19 H 1.48500 * 109.46608 * 60.00078 * 18 16 14 20 20 H 1.48497 * 109.46917 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47000 * 300.00181 * 18 16 14 22 22 C 1.46497 * 119.99906 * 270.00051 * 13 12 11 23 23 C 1.53008 * 109.46896 * 114.90395 * 22 13 12 24 24 C 1.52997 * 109.47166 * 234.90250 * 22 13 12 25 25 N 1.32543 * 121.77582 * 0.27170 * 6 5 4 26 26 C 1.31956 * 120.83335 * 359.44321 * 25 6 5 27 27 H 1.08991 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47114 * 300.00792 * 1 2 3 29 29 H 1.09006 * 109.46865 * 60.00039 * 1 2 3 30 30 H 1.07997 * 120.46279 * 0.02562 * 4 3 2 31 31 H 0.96994 * 120.00067 * 0.02562 * 9 7 6 32 32 H 1.09002 * 109.47429 * 300.00470 * 10 9 7 33 33 H 1.08994 * 109.46870 * 60.00080 * 10 9 7 34 34 H 1.09002 * 109.46929 * 300.00375 * 11 10 9 35 35 H 1.09001 * 109.46799 * 59.99736 * 11 10 9 36 36 H 1.08997 * 109.46943 * 300.00233 * 12 11 10 37 37 H 1.09000 * 109.46807 * 60.00112 * 12 11 10 38 38 H 0.97000 * 119.99779 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.47207 * 354.90591 * 22 13 12 40 40 H 1.08997 * 109.47020 * 63.31047 * 23 22 13 41 41 H 1.09003 * 109.46808 * 183.30856 * 23 22 13 42 42 H 1.09000 * 109.47080 * 303.30589 * 23 22 13 43 43 H 1.08999 * 109.47244 * 61.62181 * 24 22 13 44 44 H 1.09001 * 109.47272 * 181.62341 * 24 22 13 45 45 H 1.09005 * 109.47262 * 301.61812 * 24 22 13 46 46 H 1.08000 * 120.45522 * 180.26808 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4367 1.3018 -0.0005 5 7 4.0001 2.4951 0.0000 6 6 3.2612 3.5954 0.0015 7 6 3.9345 4.9166 0.0015 8 8 5.1479 4.9802 0.0006 9 7 3.2004 6.0470 0.0025 10 6 3.8656 7.3523 0.0031 11 6 2.8120 8.4617 0.0049 12 6 3.5066 9.8249 0.0061 13 7 2.4976 10.8871 0.0072 14 6 2.0263 11.3824 1.1936 15 1 0.9862 11.6573 1.2889 16 6 2.8853 11.5313 2.2738 17 7 4.1843 11.6077 2.0760 18 14 2.1976 11.6231 4.0082 19 1 1.4523 10.3751 4.3118 20 1 3.3134 11.7817 4.9753 21 1 1.2806 12.7861 4.1162 22 6 1.9930 11.4194 -1.2610 23 6 0.5064 11.0847 -1.3990 24 6 2.1785 12.9379 -1.2866 25 7 1.9366 3.5466 0.0079 26 6 1.3024 2.3895 0.0020 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 4.0447 0.4093 -0.0014 31 1 2.2318 5.9963 0.0037 32 1 4.4889 7.4422 0.8928 33 1 4.4879 7.4433 -0.8871 34 1 2.1884 8.3719 -0.8847 35 1 2.1899 8.3704 0.8953 36 1 4.1298 9.9143 0.8958 37 1 4.1289 9.9163 -0.8841 38 1 4.7845 11.7121 2.8308 39 1 2.5445 10.9720 -2.0879 40 1 -0.0528 11.5805 -0.6056 41 1 0.1450 11.4290 -2.3681 42 1 0.3681 10.0063 -1.3219 43 1 3.2400 13.1755 -1.2172 44 1 1.7769 13.3373 -2.2179 45 1 1.6506 13.3827 -0.4430 46 1 0.2229 2.3569 0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691739869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:58 Heat of formation + Delta-G solvation = -26.015731 kcal Electronic energy + Delta-G solvation = -26638.399026 eV Core-core repulsion = 22756.761968 eV Total energy + Delta-G solvation = -3881.637058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.59106 -40.68239 -39.48267 -38.47909 -36.49939 -35.11695 -34.25919 -33.30221 -32.29981 -30.49537 -28.80802 -27.70651 -27.28471 -26.08323 -25.48520 -24.40408 -22.38056 -22.10444 -21.27190 -19.59927 -19.28992 -19.10031 -18.15713 -17.33624 -17.02108 -16.87416 -16.62216 -16.45452 -15.92355 -15.77818 -15.61694 -15.32333 -14.87375 -14.66586 -14.63327 -14.50380 -14.02697 -13.48345 -13.30891 -13.24473 -13.12419 -12.81631 -12.68713 -12.57115 -12.50675 -12.46852 -12.35825 -12.25557 -12.14120 -11.90459 -11.68237 -11.36994 -11.29883 -11.16528 -10.50375 -10.43212 -10.25855 -9.85299 -8.46231 -7.73646 -5.34751 -0.70829 -0.16257 1.46147 1.47122 1.50467 1.55584 1.64189 1.98510 2.55193 2.62872 2.75486 3.02448 3.24230 3.33484 3.60411 3.63935 3.85331 4.19040 4.29885 4.30871 4.38341 4.38834 4.53751 4.54936 4.65656 4.75493 4.76729 4.83361 4.84878 4.95018 5.00278 5.11677 5.18052 5.23044 5.25510 5.33768 5.51596 5.53602 5.65775 5.71398 5.78253 5.93309 5.95907 6.27806 6.56383 6.74104 7.01760 7.26735 7.97862 8.49769 9.21605 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.002475 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.008456 B =11311.211917 C =11528.529592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.299 6.299 3 C 0.067 3.933 4 C 0.111 3.889 5 N -0.459 5.459 6 C 0.216 3.784 7 C 0.579 3.421 8 O -0.554 6.554 9 N -0.691 5.691 10 C 0.132 3.868 11 C -0.121 4.121 12 C 0.150 3.850 13 N -0.593 5.593 14 C -0.244 4.244 15 H 0.056 0.944 16 C -0.038 4.038 17 N -0.918 5.918 18 Si 0.946 3.054 19 H -0.280 1.280 20 H -0.299 1.299 21 H -0.277 1.277 22 C 0.151 3.849 23 C -0.142 4.142 24 C -0.137 4.137 25 N -0.460 5.460 26 C 0.064 3.936 27 H 0.130 0.870 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.210 0.790 31 H 0.419 0.581 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.028 0.972 38 H 0.248 0.752 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.024 0.976 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.670 -23.376 -7.102 27.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.209 6.209 3 C 0.014 3.986 4 C -0.058 4.058 5 N -0.174 5.174 6 C -0.051 4.051 7 C 0.362 3.638 8 O -0.431 6.431 9 N -0.344 5.344 10 C 0.008 3.992 11 C -0.161 4.161 12 C 0.023 3.977 13 N -0.314 5.314 14 C -0.374 4.374 15 H 0.073 0.927 16 C -0.235 4.235 17 N -0.562 5.562 18 Si 0.775 3.225 19 H -0.206 1.206 20 H -0.226 1.226 21 H -0.203 1.203 22 C 0.046 3.954 23 C -0.201 4.201 24 C -0.196 4.196 25 N -0.177 5.177 26 C -0.104 4.104 27 H 0.148 0.852 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.227 0.773 31 H 0.256 0.744 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -10.136 -22.545 -6.998 25.690 hybrid contribution -0.869 -0.380 1.256 1.574 sum -11.006 -22.924 -5.742 26.070 Atomic orbital electron populations 1.23684 0.74843 1.07064 1.03401 1.86122 1.24631 1.23640 1.86464 1.21184 0.94839 0.87623 0.94944 1.23345 0.90645 0.95839 0.95937 1.68190 1.41033 0.98596 1.09599 1.22224 0.86951 0.93388 1.02573 1.17521 0.85989 0.83044 0.77258 1.90780 1.14540 1.87080 1.50650 1.45788 1.11408 1.04664 1.72500 1.21306 0.95820 0.80548 1.01505 1.22144 0.97605 0.94629 1.01756 1.20711 0.91217 0.85402 1.00405 1.44078 1.47422 1.38690 1.01200 1.18995 0.92092 1.37122 0.89234 0.92678 1.25744 0.95504 1.00445 1.01787 1.70106 1.02901 1.53021 1.30203 0.85677 0.77146 0.78197 0.81461 1.20632 1.22569 1.20291 1.20670 0.94224 0.92685 0.87861 1.22055 0.96957 1.00646 1.00480 1.21952 0.99612 0.97848 1.00174 1.68107 1.09097 1.30734 1.09809 1.24103 1.03002 0.85646 0.97681 0.85206 0.90600 0.90414 0.77340 0.74357 0.93090 0.91386 0.91241 0.92869 0.91949 0.95353 0.94322 0.92423 0.94445 0.91555 0.93382 0.95715 0.91618 0.94502 0.76663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.84 113.37 1.12 1.12 16 2 O -0.30 -2.83 10.51 -90.52 -0.95 -3.78 16 3 C 0.07 0.93 6.75 22.85 0.15 1.09 16 4 C 0.11 2.02 11.28 84.97 0.96 2.98 16 5 N -0.46 -12.70 10.11 -188.81 -1.91 -14.61 16 6 C 0.22 6.27 7.59 137.56 1.04 7.32 16 7 C 0.58 20.09 7.84 86.92 0.68 20.78 16 8 O -0.55 -23.40 16.86 -3.74 -0.06 -23.46 16 9 N -0.69 -21.64 5.54 -465.53 -2.58 -24.22 16 10 C 0.13 4.62 5.67 86.38 0.49 5.11 16 11 C -0.12 -4.45 5.65 30.59 0.17 -4.28 16 12 C 0.15 6.76 5.28 86.38 0.46 7.22 16 13 N -0.59 -27.93 2.37 -678.03 -1.61 -29.54 16 14 C -0.24 -12.75 8.04 84.03 0.68 -12.07 16 15 H 0.06 2.89 7.14 -2.91 -0.02 2.87 16 16 C -0.04 -2.07 4.96 84.86 0.42 -1.65 16 17 N -0.92 -53.39 11.43 21.65 0.25 -53.15 16 18 Si 0.95 44.51 29.60 68.60 2.03 46.54 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 C 0.15 5.98 3.37 44.99 0.15 6.13 16 23 C -0.14 -4.78 9.19 71.98 0.66 -4.12 16 24 C -0.14 -5.39 9.11 71.98 0.66 -4.74 16 25 N -0.46 -10.42 9.55 -188.81 -1.80 -12.22 16 26 C 0.06 0.92 10.31 84.97 0.88 1.79 16 27 H 0.13 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.08 -0.02 7.70 -2.39 -0.02 -0.04 16 29 H 0.08 -0.06 7.71 -2.38 -0.02 -0.07 16 30 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.42 11.30 7.77 -92.71 -0.72 10.58 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 3.32 5.48 -2.39 -0.01 3.31 16 37 H 0.03 1.23 7.88 -2.39 -0.02 1.21 16 38 H 0.25 14.19 8.31 -92.71 -0.77 13.41 16 39 H 0.06 2.13 7.77 -2.39 -0.02 2.11 16 40 H 0.04 1.35 7.32 -2.39 -0.02 1.33 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 43 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.04 1.57 7.50 -2.38 -0.02 1.55 16 46 H 0.22 1.20 6.47 -2.91 -0.02 1.18 16 Total: -1.00 -73.05 384.56 2.15 -70.90 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.27 Total: 16.85 kcal Atomic # 6 Polarization: 18.17 SS G_CDS: 8.51 Total: 26.69 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -7.65 Total: -133.74 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.01 Total: -27.24 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -73.05 2.15 -70.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691739869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.888 kcal (2) G-P(sol) polarization free energy of solvation -73.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds