Wall clock time and date at job start Tue Mar 31 2020 14:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.46171 * 2 1 4 4 C 1.53048 * 109.46071 * 240.02677 * 2 1 3 5 5 C 1.53186 * 109.31482 * 178.61468 * 4 2 1 6 6 N 1.46929 * 108.77286 * 54.63643 * 5 4 2 7 7 C 1.34782 * 120.62774 * 126.41362 * 6 5 4 8 8 O 1.21641 * 119.99500 * 175.74217 * 7 6 5 9 9 C 1.47246 * 120.00402 * 355.74434 * 7 6 5 10 10 C 1.36243 * 126.16830 * 186.41065 * 9 7 6 11 11 N 1.36347 * 106.88927 * 179.97438 * 10 9 7 12 12 C 1.46499 * 126.19678 * 180.02562 * 11 10 9 13 13 C 1.36165 * 107.60107 * 0.02562 * 11 10 9 14 14 O 1.35456 * 125.55437 * 179.97438 * 13 11 10 15 15 N 1.30706 * 108.89608 * 359.74602 * 13 11 10 16 16 C 1.46929 * 118.74129 * 306.39045 * 6 5 4 17 17 H 1.08996 * 109.58589 * 293.67930 * 16 6 5 18 18 C 1.52999 * 109.58666 * 173.39812 * 16 6 5 19 19 N 1.46501 * 109.47255 * 73.20169 * 18 16 6 20 20 C 1.36932 * 119.99747 * 175.26593 * 19 18 16 21 21 H 1.07994 * 120.00233 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99736 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00147 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99845 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47375 * 90.00422 * 24 22 20 26 26 H 1.48506 * 109.46954 * 209.99822 * 24 22 20 27 27 H 1.48494 * 109.47406 * 329.99686 * 24 22 20 28 28 C 1.53041 * 109.46185 * 119.97749 * 2 1 3 29 29 H 1.08997 * 109.47328 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47377 * 59.99961 * 1 2 3 31 31 H 1.08998 * 109.47162 * 300.00319 * 1 2 3 32 32 H 1.08999 * 109.49769 * 298.57027 * 4 2 1 33 33 H 1.09004 * 109.49627 * 58.62999 * 4 2 1 34 34 H 1.09002 * 109.59005 * 174.42021 * 5 4 2 35 35 H 1.08996 * 109.58692 * 294.70803 * 5 4 2 36 36 H 1.07998 * 126.55582 * 359.97438 * 10 9 7 37 37 H 1.09000 * 109.47227 * 90.00648 * 12 11 10 38 38 H 1.09006 * 109.47086 * 209.99960 * 12 11 10 39 39 H 1.09001 * 109.47327 * 330.00054 * 12 11 10 40 40 H 0.96694 * 114.00118 * 89.99845 * 14 13 11 41 41 H 1.08995 * 109.46750 * 193.19963 * 18 16 6 42 42 H 1.09001 * 109.46947 * 313.20194 * 18 16 6 43 43 H 0.96999 * 119.99723 * 355.26065 * 19 18 16 44 44 H 0.96996 * 120.00349 * 180.02562 * 23 22 20 45 45 H 1.09006 * 109.49037 * 301.33580 * 28 2 1 46 46 H 1.09004 * 109.50003 * 61.42572 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6888 -1.2642 6 7 4.0677 -1.2489 0.0001 7 6 4.9620 -2.2574 0.0001 8 8 5.4238 -2.6606 1.0508 9 6 5.3799 -2.8710 -1.2715 10 6 6.1747 -3.9687 -1.4116 11 7 6.3075 -4.1932 -2.7499 12 6 7.0772 -5.2723 -3.3739 13 6 5.5952 -3.2328 -3.4013 14 8 5.4792 -3.1139 -4.7456 15 7 5.0377 -2.4471 -2.5180 16 6 3.5713 -0.6886 1.2643 17 1 3.9163 0.3401 1.3685 18 6 4.0911 -1.5249 2.4353 19 7 5.5183 -1.2580 2.6306 20 6 6.1819 -1.8219 3.6872 21 1 5.6533 -2.4632 4.3768 22 6 7.5344 -1.5694 3.8720 23 7 8.1786 -0.7874 3.0318 24 14 8.4396 -2.3381 5.3138 25 1 8.9952 -3.6532 4.9052 26 1 9.5466 -1.4432 5.7372 27 1 7.4970 -2.5288 6.4452 28 6 2.0398 -0.7210 1.2499 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 1.6977 -1.7558 -1.2382 33 1 1.6567 -0.2213 -2.1399 34 1 3.9416 -1.2849 -2.0983 35 1 3.9142 0.3404 -1.3700 36 1 6.6152 -4.5498 -0.6150 37 1 6.4367 -6.1437 -3.5100 38 1 7.4491 -4.9399 -4.3431 39 1 7.9185 -5.5362 -2.7330 40 1 4.7310 -3.5986 -5.1202 41 1 3.5449 -1.2611 3.3408 42 1 3.9458 -2.5833 2.2186 43 1 5.9930 -0.6817 2.0113 44 1 9.1237 -0.6112 3.1606 45 1 1.6571 -0.2210 2.1398 46 1 1.6977 -1.7559 1.2381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691838229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:12 Heat of formation + Delta-G solvation = 55.059937 kcal Electronic energy + Delta-G solvation = -28885.934690 eV Core-core repulsion = 25007.813337 eV Total energy + Delta-G solvation = -3878.121353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.15434 -39.72540 -37.52355 -36.93656 -34.67879 -34.04219 -33.19589 -31.74621 -29.63518 -29.00764 -28.12155 -27.17714 -25.27233 -23.49697 -22.78062 -22.37206 -21.55570 -20.79845 -19.79745 -19.05300 -18.17852 -17.14264 -16.63916 -16.15021 -15.59251 -15.29294 -14.76921 -14.60103 -14.52855 -14.32493 -13.91512 -13.76291 -13.34681 -13.27898 -13.14381 -13.00791 -12.80896 -12.62447 -12.31475 -12.06095 -11.99915 -11.77213 -11.48312 -11.34547 -10.98986 -10.68932 -10.66050 -10.62226 -10.46845 -10.13332 -9.81695 -9.75368 -9.39404 -9.15705 -8.61810 -8.45894 -8.26607 -7.78317 -6.38249 -5.43885 -2.62795 1.70519 2.20129 2.44439 3.47180 3.60268 3.64435 3.66447 3.83846 4.13555 4.51095 4.68885 4.82812 4.83248 4.96988 5.02038 5.07622 5.13048 5.28316 5.46963 5.56358 5.65254 5.73838 5.77260 5.81308 5.86314 5.87524 5.91886 5.96466 6.09570 6.17355 6.27946 6.29475 6.33847 6.38674 6.50460 6.58854 6.71357 6.75988 6.94479 7.12193 7.41342 7.57557 7.74120 7.96346 8.23443 8.74124 9.13202 9.85256 10.48337 10.83073 11.80263 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008832 B = 0.005506 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.549643 B = 5083.684851 C = 7812.736274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.068 0.932 4 C -0.122 4.122 5 C 0.066 3.934 6 N -0.598 5.598 7 C 0.557 3.443 8 O -0.445 6.445 9 C -0.022 4.022 10 C 0.036 3.964 11 N -0.465 5.465 12 C 0.069 3.931 13 C 0.367 3.633 14 O -0.442 6.442 15 N -0.454 5.454 16 C 0.141 3.859 17 H 0.068 0.932 18 C 0.162 3.838 19 N -0.694 5.694 20 C -0.202 4.202 21 H 0.064 0.936 22 C -0.024 4.024 23 N -0.939 5.939 24 Si 0.899 3.101 25 H -0.295 1.295 26 H -0.296 1.296 27 H -0.285 1.285 28 C -0.118 4.118 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.153 0.847 35 H 0.050 0.950 36 H 0.195 0.805 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.398 0.602 41 H 0.015 0.985 42 H 0.036 0.964 43 H 0.380 0.620 44 H 0.248 0.752 45 H 0.070 0.930 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.792 -6.485 -17.788 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.087 0.913 4 C -0.160 4.160 5 C -0.057 4.057 6 N -0.334 5.334 7 C 0.341 3.659 8 O -0.313 6.313 9 C -0.151 4.151 10 C -0.099 4.099 11 N -0.160 5.160 12 C -0.073 4.073 13 C 0.068 3.932 14 O -0.242 6.242 15 N -0.186 5.186 16 C 0.038 3.962 17 H 0.085 0.915 18 C 0.034 3.966 19 N -0.337 5.337 20 C -0.334 4.334 21 H 0.082 0.918 22 C -0.218 4.218 23 N -0.590 5.590 24 Si 0.732 3.268 25 H -0.224 1.224 26 H -0.223 1.223 27 H -0.211 1.211 28 C -0.157 4.157 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.169 0.831 35 H 0.068 0.932 36 H 0.212 0.788 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.254 0.746 41 H 0.032 0.968 42 H 0.054 0.946 43 H 0.214 0.786 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.417 -5.894 -17.323 21.568 hybrid contribution 0.877 -1.128 0.318 1.464 sum -10.540 -7.022 -17.005 21.203 Atomic orbital electron populations 1.21815 0.95635 1.01455 1.01216 1.21158 0.95029 0.99682 0.95447 0.91317 1.21919 0.96628 1.00373 0.97085 1.22834 0.93016 1.00472 0.89384 1.47608 1.43967 1.35399 1.06425 1.17062 0.80427 0.82005 0.86358 1.91336 1.52045 1.59861 1.28108 1.20949 1.04504 0.98016 0.91610 1.22683 1.02475 1.00851 0.83940 1.45732 1.39632 1.23740 1.06907 1.22097 0.96569 0.88660 0.99966 1.20602 0.97980 0.89872 0.84785 1.84898 1.53599 1.73272 1.12434 1.70337 1.23307 1.25567 0.99356 1.21473 0.92342 0.98034 0.84385 0.91451 1.20849 0.87103 0.96849 0.91786 1.42222 1.03646 1.56713 1.31115 1.19164 0.91734 1.21025 1.01500 0.91821 1.24588 0.96618 1.01512 0.99095 1.69670 1.08725 1.42223 1.38370 0.86266 0.79589 0.78379 0.82543 1.22353 1.22275 1.21147 1.21942 0.95320 1.00937 0.97521 0.92966 0.93067 0.92881 0.92236 0.91782 0.83131 0.93213 0.78804 0.90378 0.89174 0.88998 0.74614 0.96776 0.94640 0.78581 0.94199 0.91126 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 37.15 0.34 -1.13 16 2 C -0.09 -1.17 2.68 -90.58 -0.24 -1.41 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.12 -1.52 5.36 -26.61 -0.14 -1.67 16 5 C 0.07 1.01 6.32 -3.71 -0.02 0.99 16 6 N -0.60 -10.97 2.97 -166.55 -0.49 -11.46 16 7 C 0.56 11.47 7.31 -12.60 -0.09 11.38 16 8 O -0.45 -10.98 10.60 5.24 0.06 -10.92 16 9 C -0.02 -0.39 6.73 -83.06 -0.56 -0.95 16 10 C 0.04 0.53 11.30 -16.26 -0.18 0.35 16 11 N -0.46 -5.37 3.16 -125.77 -0.40 -5.77 16 12 C 0.07 0.46 11.11 59.85 0.66 1.13 16 13 C 0.37 4.64 9.03 -89.17 -0.81 3.83 16 14 O -0.44 -4.10 13.55 -18.06 -0.24 -4.35 16 15 N -0.45 -7.00 7.63 -11.22 -0.09 -7.09 16 16 C 0.14 2.61 2.91 -67.60 -0.20 2.42 16 17 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 18 C 0.16 3.65 4.89 -4.04 -0.02 3.63 16 19 N -0.69 -19.21 3.21 -59.91 -0.19 -19.40 16 20 C -0.20 -6.09 9.71 -15.06 -0.15 -6.24 16 21 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 23 N -0.94 -30.48 13.06 55.49 0.72 -29.76 16 24 Si 0.90 23.97 29.55 -169.99 -5.02 18.94 16 25 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 26 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 C -0.12 -1.72 4.62 -26.61 -0.12 -1.84 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.15 2.35 3.60 -82.07 -0.30 2.05 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.20 2.73 8.06 -52.49 -0.42 2.31 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.40 1.52 9.06 45.56 0.41 1.93 16 41 H 0.01 0.32 8.09 -51.93 -0.42 -0.10 16 42 H 0.04 0.86 6.33 -51.93 -0.33 0.53 16 43 H 0.38 11.35 7.26 -40.82 -0.30 11.05 16 44 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -37.93 366.09 -8.16 -46.09 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.39 Total: 8.54 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -1.62 Total: 9.65 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -0.45 Total: -73.47 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.19 Total: -15.27 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.02 Total: 18.94 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.93 -8.16 -46.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691838229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.146 kcal (2) G-P(sol) polarization free energy of solvation -37.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds