Wall clock time and date at job start Tue Mar 31 2020 14:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.46171 * 2 1 4 4 C 1.53048 * 109.46071 * 240.02677 * 2 1 3 5 5 C 1.53186 * 109.31482 * 178.61468 * 4 2 1 6 6 N 1.46929 * 108.77286 * 54.63643 * 5 4 2 7 7 C 1.34782 * 120.62774 * 126.41362 * 6 5 4 8 8 O 1.21641 * 119.99500 * 175.74217 * 7 6 5 9 9 C 1.47246 * 120.00402 * 355.74434 * 7 6 5 10 10 C 1.36243 * 126.16830 * 186.41065 * 9 7 6 11 11 N 1.36347 * 106.88927 * 179.97438 * 10 9 7 12 12 C 1.46499 * 126.19678 * 180.02562 * 11 10 9 13 13 C 1.36165 * 107.60107 * 0.02562 * 11 10 9 14 14 O 1.35456 * 125.55437 * 179.97438 * 13 11 10 15 15 N 1.30706 * 108.89608 * 359.74602 * 13 11 10 16 16 C 1.46929 * 118.74129 * 306.39045 * 6 5 4 17 17 H 1.08996 * 109.58589 * 293.67930 * 16 6 5 18 18 C 1.52999 * 109.58666 * 173.39812 * 16 6 5 19 19 N 1.46501 * 109.47255 * 73.20169 * 18 16 6 20 20 C 1.36932 * 119.99747 * 175.26593 * 19 18 16 21 21 H 1.07994 * 120.00233 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99736 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00147 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99845 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47375 * 90.00422 * 24 22 20 26 26 H 1.48506 * 109.46954 * 209.99822 * 24 22 20 27 27 H 1.48494 * 109.47406 * 329.99686 * 24 22 20 28 28 C 1.53041 * 109.46185 * 119.97749 * 2 1 3 29 29 H 1.08997 * 109.47328 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47377 * 59.99961 * 1 2 3 31 31 H 1.08998 * 109.47162 * 300.00319 * 1 2 3 32 32 H 1.08999 * 109.49769 * 298.57027 * 4 2 1 33 33 H 1.09004 * 109.49627 * 58.62999 * 4 2 1 34 34 H 1.09002 * 109.59005 * 174.42021 * 5 4 2 35 35 H 1.08996 * 109.58692 * 294.70803 * 5 4 2 36 36 H 1.07998 * 126.55582 * 359.97438 * 10 9 7 37 37 H 1.09000 * 109.47227 * 90.00648 * 12 11 10 38 38 H 1.09006 * 109.47086 * 209.99960 * 12 11 10 39 39 H 1.09001 * 109.47327 * 330.00054 * 12 11 10 40 40 H 0.96694 * 114.00118 * 89.99845 * 14 13 11 41 41 H 1.08995 * 109.46750 * 193.19963 * 18 16 6 42 42 H 1.09001 * 109.46947 * 313.20194 * 18 16 6 43 43 H 0.96999 * 119.99723 * 355.26065 * 19 18 16 44 44 H 0.96996 * 120.00349 * 180.02562 * 23 22 20 45 45 H 1.09006 * 109.49037 * 301.33580 * 28 2 1 46 46 H 1.09004 * 109.50003 * 61.42572 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6888 -1.2642 6 7 4.0677 -1.2489 0.0001 7 6 4.9620 -2.2574 0.0001 8 8 5.4238 -2.6606 1.0508 9 6 5.3799 -2.8710 -1.2715 10 6 6.1747 -3.9687 -1.4116 11 7 6.3075 -4.1932 -2.7499 12 6 7.0772 -5.2723 -3.3739 13 6 5.5952 -3.2328 -3.4013 14 8 5.4792 -3.1139 -4.7456 15 7 5.0377 -2.4471 -2.5180 16 6 3.5713 -0.6886 1.2643 17 1 3.9163 0.3401 1.3685 18 6 4.0911 -1.5249 2.4353 19 7 5.5183 -1.2580 2.6306 20 6 6.1819 -1.8219 3.6872 21 1 5.6533 -2.4632 4.3768 22 6 7.5344 -1.5694 3.8720 23 7 8.1786 -0.7874 3.0318 24 14 8.4396 -2.3381 5.3138 25 1 8.9952 -3.6532 4.9052 26 1 9.5466 -1.4432 5.7372 27 1 7.4970 -2.5288 6.4452 28 6 2.0398 -0.7210 1.2499 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 1.6977 -1.7558 -1.2382 33 1 1.6567 -0.2213 -2.1399 34 1 3.9416 -1.2849 -2.0983 35 1 3.9142 0.3404 -1.3700 36 1 6.6152 -4.5498 -0.6150 37 1 6.4367 -6.1437 -3.5100 38 1 7.4491 -4.9399 -4.3431 39 1 7.9185 -5.5362 -2.7330 40 1 4.7310 -3.5986 -5.1202 41 1 3.5449 -1.2611 3.3408 42 1 3.9458 -2.5833 2.2186 43 1 5.9930 -0.6817 2.0113 44 1 9.1237 -0.6112 3.1606 45 1 1.6571 -0.2210 2.1398 46 1 1.6977 -1.7559 1.2381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691838229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:11 Heat of formation + Delta-G solvation = 26.296137 kcal Electronic energy + Delta-G solvation = -28887.181982 eV Core-core repulsion = 25007.813337 eV Total energy + Delta-G solvation = -3879.368645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.22638 -41.16460 -38.52358 -38.12824 -36.37699 -35.34408 -34.49895 -33.55602 -31.46696 -30.18240 -29.19103 -28.02563 -27.09803 -24.83174 -24.33335 -23.89855 -22.61443 -22.11787 -20.98942 -20.26549 -19.23041 -19.04043 -17.97226 -17.36863 -16.83263 -16.66405 -16.49075 -15.88035 -15.63128 -15.45399 -15.28044 -15.24122 -14.83334 -14.65488 -14.50053 -14.37247 -13.96467 -13.70407 -13.52773 -13.38770 -13.12059 -12.91142 -12.82528 -12.76731 -12.61503 -12.49832 -12.12906 -12.07718 -11.85248 -11.72948 -11.51813 -11.20540 -10.85641 -10.76060 -10.40476 -9.95208 -9.58002 -9.27391 -8.58939 -7.78316 -4.97559 0.59331 1.15547 1.43386 1.45679 1.49679 1.57358 2.19275 2.64620 2.68369 2.80879 3.53972 3.65442 3.73403 3.83000 3.91344 4.01027 4.15662 4.19292 4.35973 4.39182 4.45269 4.49708 4.55375 4.62723 4.68254 4.82733 4.83318 4.86560 4.90606 4.98780 5.02561 5.08961 5.15920 5.20819 5.26579 5.35463 5.46093 5.56190 5.59630 5.61615 5.71878 6.06838 6.41564 6.55429 6.72755 6.81555 7.47141 7.61234 8.28128 8.52239 9.46988 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008832 B = 0.005506 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.549643 B = 5083.684851 C = 7812.736274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.112 4.112 5 C 0.061 3.939 6 N -0.597 5.597 7 C 0.553 3.447 8 O -0.504 6.504 9 C -0.059 4.059 10 C 0.040 3.960 11 N -0.455 5.455 12 C 0.061 3.939 13 C 0.384 3.616 14 O -0.437 6.437 15 N -0.475 5.475 16 C 0.144 3.856 17 H 0.053 0.947 18 C 0.166 3.834 19 N -0.702 5.702 20 C -0.206 4.206 21 H 0.064 0.936 22 C -0.088 4.088 23 N -0.978 5.978 24 Si 0.969 3.031 25 H -0.293 1.293 26 H -0.297 1.297 27 H -0.271 1.271 28 C -0.109 4.109 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.156 0.844 35 H 0.044 0.956 36 H 0.195 0.805 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.426 0.574 41 H 0.017 0.983 42 H 0.022 0.978 43 H 0.365 0.635 44 H 0.243 0.757 45 H 0.081 0.919 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.273 -7.410 -19.799 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.061 4.061 6 N -0.332 5.332 7 C 0.339 3.661 8 O -0.377 6.377 9 C -0.186 4.186 10 C -0.098 4.098 11 N -0.149 5.149 12 C -0.079 4.079 13 C 0.083 3.917 14 O -0.241 6.241 15 N -0.206 5.206 16 C 0.041 3.959 17 H 0.071 0.929 18 C 0.040 3.960 19 N -0.342 5.342 20 C -0.339 4.339 21 H 0.082 0.918 22 C -0.278 4.278 23 N -0.631 5.631 24 Si 0.800 3.200 25 H -0.221 1.221 26 H -0.224 1.224 27 H -0.196 1.196 28 C -0.147 4.147 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.171 0.829 35 H 0.062 0.938 36 H 0.212 0.788 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.116 0.884 40 H 0.287 0.713 41 H 0.035 0.965 42 H 0.039 0.961 43 H 0.196 0.804 44 H 0.052 0.948 45 H 0.100 0.900 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.981 -6.842 -19.395 24.321 hybrid contribution 1.303 -0.910 0.718 1.744 sum -11.679 -7.752 -18.677 23.352 Atomic orbital electron populations 1.21748 0.93285 1.02031 1.02376 1.21142 0.96858 0.99066 0.93912 0.91428 1.21855 0.94114 1.00694 0.98330 1.23047 0.95237 0.99845 0.87988 1.47782 1.43272 1.34754 1.07364 1.17580 0.79790 0.81632 0.87055 1.91283 1.54042 1.62087 1.30294 1.20550 1.07066 0.99687 0.91337 1.22677 1.01538 0.99999 0.85571 1.45909 1.39164 1.24262 1.05561 1.22501 0.96907 0.88086 1.00394 1.20621 0.96484 0.88927 0.85701 1.84874 1.55203 1.73932 1.10107 1.70150 1.24775 1.26882 0.98839 1.21383 0.95095 0.96102 0.83365 0.92948 1.20871 0.84761 0.96762 0.93617 1.42307 1.05365 1.56331 1.30225 1.19521 0.92294 1.20268 1.01800 0.91771 1.25393 0.97464 1.02749 1.02226 1.69859 1.08546 1.44181 1.40539 0.85164 0.78148 0.77151 0.79566 1.22080 1.22399 1.19591 1.21882 0.91789 1.01486 0.99566 0.92670 0.91400 0.92307 0.92386 0.89118 0.82856 0.93787 0.78846 0.87653 0.87434 0.88368 0.71349 0.96494 0.96054 0.80384 0.94823 0.90036 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.19 71.98 0.66 -1.72 16 2 C -0.09 -2.09 2.68 -10.77 -0.03 -2.11 16 3 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.11 -2.59 5.36 30.67 0.16 -2.42 16 5 C 0.06 1.85 6.32 86.36 0.55 2.40 16 6 N -0.60 -22.67 2.97 -799.07 -2.37 -25.04 16 7 C 0.55 23.95 7.31 86.61 0.63 24.59 16 8 O -0.50 -26.44 10.60 -4.16 -0.04 -26.48 16 9 C -0.06 -2.11 6.73 40.40 0.27 -1.84 16 10 C 0.04 1.21 11.30 83.53 0.94 2.15 16 11 N -0.46 -9.74 3.16 -662.75 -2.09 -11.83 16 12 C 0.06 0.63 11.11 127.77 1.42 2.05 16 13 C 0.38 8.94 9.03 179.84 1.62 10.57 16 14 O -0.44 -6.68 13.55 -87.54 -1.19 -7.87 16 15 N -0.47 -14.38 7.63 -303.17 -2.31 -16.69 16 16 C 0.14 5.53 2.91 44.97 0.13 5.66 16 17 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 18 C 0.17 7.88 4.89 86.38 0.42 8.30 16 19 N -0.70 -40.81 3.21 -343.46 -1.10 -41.91 16 20 C -0.21 -12.87 9.71 84.04 0.82 -12.06 16 21 H 0.06 3.90 7.83 -2.91 -0.02 3.88 16 22 C -0.09 -5.57 5.50 84.86 0.47 -5.10 16 23 N -0.98 -65.88 13.06 21.65 0.28 -65.59 16 24 Si 0.97 50.62 29.55 68.60 2.03 52.65 16 25 H -0.29 -15.06 7.11 99.48 0.71 -14.36 16 26 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 27 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 28 C -0.11 -3.09 4.62 30.67 0.14 -2.95 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.16 4.73 3.60 -61.90 -0.22 4.51 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.19 5.69 8.06 -2.91 -0.02 5.67 16 37 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.43 1.56 9.06 -74.06 -0.67 0.89 16 41 H 0.02 0.80 8.09 -2.39 -0.02 0.78 16 42 H 0.02 1.10 6.33 -2.39 -0.02 1.08 16 43 H 0.36 23.07 7.26 -92.71 -0.67 22.40 16 44 H 0.24 15.85 8.31 -92.71 -0.77 15.08 16 45 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -86.46 366.09 0.86 -85.60 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.55 Total: 29.67 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: 8.21 Total: 27.51 kcal Atomic # 7 Polarization: -153.47 SS G_CDS: -7.60 Total: -161.07 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.23 Total: -34.35 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.03 Total: 52.65 kcal Total: -86.46 0.86 -85.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691838229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.895 kcal (2) G-P(sol) polarization free energy of solvation -86.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds