Wall clock time and date at job start Tue Mar 31 2020 13:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47319 * 2 1 4 4 H 1.08998 * 109.46376 * 304.99972 * 3 2 1 5 5 C 1.52999 * 109.47015 * 184.99952 * 3 2 1 6 6 N 1.46506 * 109.46684 * 184.99978 * 5 3 2 7 7 C 1.34777 * 119.99873 * 180.02562 * 6 5 3 8 8 O 1.21637 * 119.99895 * 359.97438 * 7 6 5 9 9 C 1.47126 * 120.00202 * 179.97438 * 7 6 5 10 10 C 1.37830 * 126.99458 * 270.02717 * 9 7 6 11 11 C 1.50693 * 125.81891 * 0.02562 * 10 9 7 12 12 N 1.34598 * 108.36350 * 179.97438 * 10 9 7 13 13 H 0.96995 * 124.79715 * 179.97438 * 12 10 9 14 14 C 1.36781 * 110.40940 * 359.97438 * 12 10 9 15 15 C 1.35010 * 108.93945 * 359.70799 * 14 12 10 16 16 N 1.40434 * 126.85930 * 180.28497 * 15 14 12 17 17 C 1.34779 * 120.00478 * 0.18627 * 16 15 14 18 18 C 1.50695 * 120.00321 * 179.97438 * 17 16 15 19 19 O 1.21306 * 119.99486 * 359.97438 * 17 16 15 20 20 N 1.46496 * 109.47067 * 64.99545 * 3 2 1 21 21 C 1.36939 * 120.00273 * 275.00234 * 20 3 2 22 22 H 1.08006 * 119.99802 * 0.02562 * 21 20 3 23 23 C 1.38806 * 120.00137 * 180.02562 * 21 20 3 24 24 N 1.31611 * 120.00236 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99831 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47270 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47453 * 120.00306 * 25 23 21 28 28 H 1.48504 * 109.47086 * 239.99943 * 25 23 21 29 29 H 1.09000 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47444 * 300.00344 * 1 2 3 31 31 H 1.09006 * 109.46813 * 60.00451 * 1 2 3 32 32 H 1.09000 * 109.47860 * 239.99520 * 2 1 3 33 33 H 1.09006 * 109.46813 * 119.99549 * 2 1 3 34 34 H 1.09000 * 109.47486 * 64.99912 * 5 3 2 35 35 H 1.09001 * 109.47362 * 304.99190 * 5 3 2 36 36 H 0.96995 * 120.00050 * 359.72237 * 6 5 3 37 37 H 1.08997 * 109.47307 * 90.00734 * 11 10 9 38 38 H 1.09008 * 109.47021 * 210.00187 * 11 10 9 39 39 H 1.09000 * 109.47584 * 330.00188 * 11 10 9 40 40 H 1.08001 * 125.52676 * 179.97438 * 14 12 10 41 41 H 0.97005 * 119.99500 * 180.17446 * 16 15 14 42 42 H 1.09000 * 109.47266 * 89.99226 * 18 17 16 43 43 H 1.09000 * 109.46886 * 210.00038 * 18 17 16 44 44 H 1.09003 * 109.47119 * 329.99326 * 18 17 16 45 45 H 0.97002 * 120.00310 * 95.00473 * 20 3 2 46 46 H 0.97003 * 120.00398 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 4.0631 2.8168 -0.0059 7 6 5.3857 3.0630 -0.0868 8 8 6.1657 2.1457 -0.2588 9 6 5.8860 4.4414 0.0329 10 6 6.0772 5.3461 -0.9892 11 6 5.8065 5.0960 -2.4504 12 7 6.5459 6.4913 -0.4598 13 1 6.7634 7.2880 -0.9684 14 6 6.6723 6.3729 0.8970 15 6 6.2761 5.1367 1.2678 16 7 6.2466 4.6174 2.5723 17 6 6.6385 5.3816 3.6110 18 6 6.6063 4.8246 5.0108 19 8 7.0172 6.5179 3.4189 20 7 1.6524 2.0975 1.2517 21 6 0.4156 2.6735 1.3687 22 1 -0.2743 2.6446 0.5382 23 6 0.0485 3.2946 2.5545 24 7 0.8890 3.3295 3.5668 25 14 -1.6389 4.0797 2.7143 26 1 -2.3886 3.9047 1.4443 27 1 -2.3839 3.4308 3.8229 28 1 -1.4856 5.5284 3.0023 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8500 1.0376 -1.0960 35 1 3.9955 0.8311 0.6660 36 1 3.4407 3.5488 0.1272 37 1 4.7787 5.3751 -2.6825 38 1 6.4902 5.6930 -3.0540 39 1 5.9548 4.0390 -2.6718 40 1 7.0270 7.1448 1.5640 41 1 5.9439 3.7086 2.7258 42 1 7.5615 4.3500 5.2351 43 1 6.4268 5.6330 5.7195 44 1 5.8070 4.0877 5.0903 45 1 2.2719 2.1233 1.9978 46 1 0.6326 3.7638 4.3954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698604498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:44 Heat of formation + Delta-G solvation = -29.836826 kcal Electronic energy + Delta-G solvation = -27879.140918 eV Core-core repulsion = 23997.338165 eV Total energy + Delta-G solvation = -3881.802753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26606 -39.34099 -38.79963 -36.61215 -34.66067 -33.57537 -32.37648 -31.54980 -30.87005 -29.75737 -29.08207 -27.77747 -25.95524 -23.91963 -22.88169 -22.01662 -21.51099 -20.07595 -19.63642 -18.98467 -18.12029 -17.24327 -16.21741 -15.96345 -15.75831 -15.62755 -15.29345 -15.22545 -14.42709 -14.33412 -14.03565 -13.71918 -13.60177 -13.18439 -13.02023 -12.85189 -12.78813 -12.75044 -12.58054 -12.49229 -12.22500 -12.13759 -11.72970 -11.42123 -10.98089 -10.90789 -10.77007 -10.72725 -10.44250 -10.19965 -10.01311 -9.81459 -9.61330 -9.54057 -8.96986 -8.56642 -8.20419 -7.59028 -7.03933 -5.83342 -3.11462 2.16307 2.24121 2.90558 3.04892 3.18571 3.38158 3.44211 3.44807 3.46703 3.90145 4.53214 4.75569 4.82041 5.06334 5.24632 5.31955 5.39122 5.42764 5.43152 5.46136 5.48444 5.56579 5.78553 5.83652 5.86194 5.92389 5.95216 5.96876 5.99232 6.14053 6.24354 6.42482 6.55081 6.57635 6.60896 6.89315 6.94372 7.02416 7.04447 7.23171 7.50032 7.64372 7.65891 8.04291 8.21779 8.34315 8.66899 9.46715 10.01606 10.37548 11.38694 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009539 B = 0.004424 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.571086 B = 6327.385890 C = 7701.526327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.113 3.887 6 N -0.703 5.703 7 C 0.589 3.411 8 O -0.553 6.553 9 C -0.231 4.231 10 C 0.080 3.920 11 C -0.090 4.090 12 N -0.546 5.546 13 H 0.417 0.583 14 C -0.031 4.031 15 C 0.097 3.903 16 N -0.636 5.636 17 C 0.513 3.487 18 C -0.171 4.171 19 O -0.544 6.544 20 N -0.720 5.720 21 C -0.235 4.235 22 H 0.073 0.927 23 C -0.011 4.011 24 N -0.928 5.928 25 Si 0.901 3.099 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.293 1.293 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.412 0.588 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.192 0.808 41 H 0.415 0.585 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.538 2.825 -6.932 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.011 4.011 6 N -0.354 5.354 7 C 0.374 3.626 8 O -0.431 6.431 9 C -0.244 4.244 10 C -0.038 4.038 11 C -0.147 4.147 12 N -0.143 5.143 13 H 0.254 0.746 14 C -0.160 4.160 15 C -0.004 4.004 16 N -0.279 5.279 17 C 0.302 3.698 18 C -0.230 4.230 19 O -0.422 6.422 20 N -0.362 5.362 21 C -0.366 4.366 22 H 0.091 0.909 23 C -0.207 4.207 24 N -0.576 5.576 25 Si 0.732 3.268 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.248 0.752 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.209 0.791 41 H 0.251 0.749 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.218 0.782 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.199 3.137 -7.163 13.659 hybrid contribution -1.234 0.575 0.490 1.447 sum 9.965 3.712 -6.673 12.554 Atomic orbital electron populations 1.21768 0.95769 0.99589 1.03228 1.22069 0.96920 0.98442 0.99994 1.20560 0.89984 0.92741 0.91426 0.92899 1.21687 0.95570 0.82816 1.01050 1.46075 1.07003 1.10557 1.71765 1.17363 0.82160 0.86945 0.76087 1.90754 1.56533 1.45877 1.49986 1.19942 1.17302 0.95492 0.91627 1.20209 1.02534 0.86100 0.94943 1.20415 1.02487 1.03728 0.88112 1.41323 1.52627 1.12895 1.07437 0.74623 1.22029 1.11668 0.99237 0.83109 1.17767 1.06165 0.93222 0.83197 1.43007 1.63713 1.17398 1.03754 1.20908 0.76301 0.85481 0.87105 1.21852 1.04756 1.03860 0.92537 1.90552 1.47332 1.18832 1.85525 1.42424 1.16718 1.65823 1.11237 1.19233 0.91886 1.27540 0.97936 0.90922 1.24698 0.97964 1.01582 0.96439 1.69650 1.35065 1.48969 1.03941 0.86220 0.84241 0.78904 0.77429 1.20595 1.21959 1.22011 0.94921 0.89688 0.94153 0.93873 0.92548 0.91907 0.91887 0.75164 0.90219 0.91247 0.89833 0.79130 0.74908 0.88746 0.88542 0.89316 0.78168 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.18 37.16 0.34 -2.20 16 2 C -0.13 -2.23 5.61 -26.73 -0.15 -2.38 16 3 C 0.16 2.92 2.59 -67.93 -0.18 2.74 16 4 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 5 C 0.11 1.87 5.23 -4.04 -0.02 1.85 16 6 N -0.70 -11.72 5.38 -61.47 -0.33 -12.05 16 7 C 0.59 10.20 7.32 -12.65 -0.09 10.10 16 8 O -0.55 -11.08 17.11 5.24 0.09 -10.99 16 9 C -0.23 -3.68 6.09 -102.90 -0.63 -4.31 16 10 C 0.08 1.03 7.21 -81.53 -0.59 0.45 16 11 C -0.09 -0.88 10.25 36.00 0.37 -0.51 16 12 N -0.55 -6.25 5.90 -8.68 -0.05 -6.31 16 13 H 0.42 3.18 8.96 -40.82 -0.37 2.81 16 14 C -0.03 -0.44 10.79 -16.49 -0.18 -0.62 16 15 C 0.10 1.56 7.22 -81.52 -0.59 0.97 16 16 N -0.64 -9.53 5.46 -8.52 -0.05 -9.58 16 17 C 0.51 7.39 7.91 -10.99 -0.09 7.31 16 18 C -0.17 -1.77 10.30 36.00 0.37 -1.40 16 19 O -0.54 -9.16 14.32 5.54 0.08 -9.08 16 20 N -0.72 -15.85 4.51 -53.43 -0.24 -16.09 16 21 C -0.23 -5.83 7.75 -15.06 -0.12 -5.95 16 22 H 0.07 1.78 7.32 -52.48 -0.38 1.40 16 23 C -0.01 -0.28 5.50 -17.44 -0.10 -0.38 16 24 N -0.93 -26.01 13.06 55.49 0.72 -25.28 16 25 Si 0.90 21.33 29.55 -169.99 -5.02 16.31 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.75 5.99 -51.93 -0.31 1.44 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.41 7.24 8.13 -40.82 -0.33 6.91 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 40 H 0.19 2.78 5.86 -52.49 -0.31 2.48 16 41 H 0.42 5.89 8.83 -40.82 -0.36 5.53 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.38 9.24 7.80 -40.82 -0.32 8.92 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 386.35 15.07 5.82 5.82 Total: -1.00 -32.19 386.35 -7.61 -39.80 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -7.00 Total: 21.77 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -1.64 Total: 5.68 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: 0.05 Total: -69.31 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.17 Total: -20.08 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.19 -7.61 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698604498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.964 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds