Wall clock time and date at job start Tue Mar 31 2020 13:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47319 * 2 1 4 4 H 1.08998 * 109.46376 * 304.99972 * 3 2 1 5 5 C 1.52999 * 109.47015 * 184.99952 * 3 2 1 6 6 N 1.46506 * 109.46684 * 184.99978 * 5 3 2 7 7 C 1.34777 * 119.99873 * 180.02562 * 6 5 3 8 8 O 1.21637 * 119.99895 * 359.97438 * 7 6 5 9 9 C 1.47126 * 120.00202 * 179.97438 * 7 6 5 10 10 C 1.37830 * 126.99458 * 270.02717 * 9 7 6 11 11 C 1.50693 * 125.81891 * 0.02562 * 10 9 7 12 12 N 1.34598 * 108.36350 * 179.97438 * 10 9 7 13 13 H 0.96995 * 124.79715 * 179.97438 * 12 10 9 14 14 C 1.36781 * 110.40940 * 359.97438 * 12 10 9 15 15 C 1.35010 * 108.93945 * 359.70799 * 14 12 10 16 16 N 1.40434 * 126.85930 * 180.28497 * 15 14 12 17 17 C 1.34779 * 120.00478 * 0.18627 * 16 15 14 18 18 C 1.50695 * 120.00321 * 179.97438 * 17 16 15 19 19 O 1.21306 * 119.99486 * 359.97438 * 17 16 15 20 20 N 1.46496 * 109.47067 * 64.99545 * 3 2 1 21 21 C 1.36939 * 120.00273 * 275.00234 * 20 3 2 22 22 H 1.08006 * 119.99802 * 0.02562 * 21 20 3 23 23 C 1.38806 * 120.00137 * 180.02562 * 21 20 3 24 24 N 1.31611 * 120.00236 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99831 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47270 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47453 * 120.00306 * 25 23 21 28 28 H 1.48504 * 109.47086 * 239.99943 * 25 23 21 29 29 H 1.09000 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47444 * 300.00344 * 1 2 3 31 31 H 1.09006 * 109.46813 * 60.00451 * 1 2 3 32 32 H 1.09000 * 109.47860 * 239.99520 * 2 1 3 33 33 H 1.09006 * 109.46813 * 119.99549 * 2 1 3 34 34 H 1.09000 * 109.47486 * 64.99912 * 5 3 2 35 35 H 1.09001 * 109.47362 * 304.99190 * 5 3 2 36 36 H 0.96995 * 120.00050 * 359.72237 * 6 5 3 37 37 H 1.08997 * 109.47307 * 90.00734 * 11 10 9 38 38 H 1.09008 * 109.47021 * 210.00187 * 11 10 9 39 39 H 1.09000 * 109.47584 * 330.00188 * 11 10 9 40 40 H 1.08001 * 125.52676 * 179.97438 * 14 12 10 41 41 H 0.97005 * 119.99500 * 180.17446 * 16 15 14 42 42 H 1.09000 * 109.47266 * 89.99226 * 18 17 16 43 43 H 1.09000 * 109.46886 * 210.00038 * 18 17 16 44 44 H 1.09003 * 109.47119 * 329.99326 * 18 17 16 45 45 H 0.97002 * 120.00310 * 95.00473 * 20 3 2 46 46 H 0.97003 * 120.00398 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 4.0631 2.8168 -0.0059 7 6 5.3857 3.0630 -0.0868 8 8 6.1657 2.1457 -0.2588 9 6 5.8860 4.4414 0.0329 10 6 6.0772 5.3461 -0.9892 11 6 5.8065 5.0960 -2.4504 12 7 6.5459 6.4913 -0.4598 13 1 6.7634 7.2880 -0.9684 14 6 6.6723 6.3729 0.8970 15 6 6.2761 5.1367 1.2678 16 7 6.2466 4.6174 2.5723 17 6 6.6385 5.3816 3.6110 18 6 6.6063 4.8246 5.0108 19 8 7.0172 6.5179 3.4189 20 7 1.6524 2.0975 1.2517 21 6 0.4156 2.6735 1.3687 22 1 -0.2743 2.6446 0.5382 23 6 0.0485 3.2946 2.5545 24 7 0.8890 3.3295 3.5668 25 14 -1.6389 4.0797 2.7143 26 1 -2.3886 3.9047 1.4443 27 1 -2.3839 3.4308 3.8229 28 1 -1.4856 5.5284 3.0023 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8500 1.0376 -1.0960 35 1 3.9955 0.8311 0.6660 36 1 3.4407 3.5488 0.1272 37 1 4.7787 5.3751 -2.6825 38 1 6.4902 5.6930 -3.0540 39 1 5.9548 4.0390 -2.6718 40 1 7.0270 7.1448 1.5640 41 1 5.9439 3.7086 2.7258 42 1 7.5615 4.3500 5.2351 43 1 6.4268 5.6330 5.7195 44 1 5.8070 4.0877 5.0903 45 1 2.2719 2.1233 1.9978 46 1 0.6326 3.7638 4.3954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698604498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:43 Heat of formation + Delta-G solvation = -53.489423 kcal Electronic energy + Delta-G solvation = -27880.166572 eV Core-core repulsion = 23997.338165 eV Total energy + Delta-G solvation = -3882.828407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.36067 -40.52167 -40.12663 -38.16115 -35.81869 -35.12950 -34.08417 -32.51425 -31.94255 -31.42979 -30.14271 -29.20649 -27.01653 -25.61226 -24.36917 -23.10481 -22.78312 -21.54724 -20.81216 -20.25585 -19.29268 -19.02986 -17.36701 -17.21936 -17.04639 -16.83930 -16.72812 -16.41913 -15.97904 -15.52032 -15.41269 -15.22345 -14.81402 -14.67853 -14.48940 -14.17105 -13.89058 -13.76888 -13.57288 -13.52089 -13.40757 -13.08794 -12.96302 -12.82563 -12.77989 -12.68422 -12.32973 -12.05956 -11.88243 -11.83667 -11.58829 -11.30302 -11.08481 -10.93180 -10.82863 -9.95969 -9.31854 -8.92039 -8.71056 -7.84557 -5.09761 1.08177 1.12107 1.48986 1.51980 1.58610 1.59527 1.98355 2.03339 2.35475 2.60981 2.67923 3.49979 3.75525 3.85597 3.92872 4.00362 4.08615 4.24483 4.40915 4.43776 4.48454 4.52821 4.61699 4.62102 4.72684 4.76768 4.82195 4.91865 4.92491 4.95694 5.06377 5.14696 5.17069 5.19621 5.25154 5.52546 5.62600 5.65597 5.76207 5.79716 5.92774 6.36240 6.44024 6.65209 6.69099 7.09191 7.30270 7.44741 8.17032 8.41784 9.38277 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009539 B = 0.004424 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.571086 B = 6327.385890 C = 7701.526327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.165 3.835 4 H 0.058 0.942 5 C 0.121 3.879 6 N -0.698 5.698 7 C 0.598 3.402 8 O -0.584 6.584 9 C -0.272 4.272 10 C 0.098 3.902 11 C -0.089 4.089 12 N -0.526 5.526 13 H 0.437 0.563 14 C -0.036 4.036 15 C 0.069 3.931 16 N -0.639 5.639 17 C 0.504 3.496 18 C -0.163 4.163 19 O -0.573 6.573 20 N -0.725 5.725 21 C -0.211 4.211 22 H 0.078 0.922 23 C -0.071 4.071 24 N -0.962 5.962 25 Si 0.952 3.048 26 H -0.267 1.267 27 H -0.302 1.302 28 H -0.303 1.303 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.408 0.592 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.189 0.811 41 H 0.415 0.585 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.373 0.627 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.479 2.752 -9.011 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.057 3.943 4 H 0.076 0.924 5 C -0.004 4.004 6 N -0.348 5.348 7 C 0.384 3.616 8 O -0.465 6.465 9 C -0.284 4.284 10 C -0.022 4.022 11 C -0.146 4.146 12 N -0.125 5.125 13 H 0.278 0.722 14 C -0.166 4.166 15 C -0.032 4.032 16 N -0.281 5.281 17 C 0.295 3.705 18 C -0.222 4.222 19 O -0.454 6.454 20 N -0.365 5.365 21 C -0.343 4.343 22 H 0.096 0.904 23 C -0.263 4.263 24 N -0.614 5.614 25 Si 0.784 3.216 26 H -0.191 1.191 27 H -0.230 1.230 28 H -0.231 1.231 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.244 0.756 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.205 0.795 41 H 0.251 0.749 42 H 0.137 0.863 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.205 0.795 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.124 3.059 -9.304 14.821 hybrid contribution -1.189 0.552 1.015 1.658 sum 9.935 3.610 -8.289 13.433 Atomic orbital electron populations 1.21696 0.96078 1.00510 1.01740 1.21985 0.96518 0.97342 1.01096 1.20706 0.90902 0.93246 0.89488 0.92443 1.21626 0.94344 0.82741 1.01649 1.46048 1.06880 1.10433 1.71404 1.17491 0.81809 0.87253 0.75022 1.90725 1.57148 1.47041 1.51618 1.19980 1.20105 0.95628 0.92703 1.20684 1.00055 0.85502 0.95931 1.20543 1.04176 1.03765 0.86093 1.41276 1.51282 1.13352 1.06556 0.72236 1.21989 1.11696 0.98662 0.84297 1.18172 1.07138 0.94117 0.83741 1.43132 1.63625 1.17482 1.03901 1.21657 0.75418 0.85156 0.88263 1.21890 1.06285 1.04140 0.89899 1.90526 1.48718 1.20024 1.86099 1.42532 1.15672 1.65996 1.12343 1.19492 0.92454 1.25071 0.97317 0.90367 1.25282 1.00586 1.03606 0.96858 1.69778 1.36455 1.50936 1.04198 0.85371 0.81509 0.77316 0.77389 1.19141 1.22982 1.23093 0.92945 0.93308 0.93292 0.90648 0.93517 0.90041 0.92868 0.75603 0.88841 0.88012 0.90817 0.79458 0.74896 0.86314 0.87894 0.88820 0.79505 0.94602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.18 71.98 0.66 -3.99 16 2 C -0.13 -4.01 5.61 30.60 0.17 -3.84 16 3 C 0.17 5.65 2.59 44.99 0.12 5.76 16 4 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 5 C 0.12 3.83 5.23 86.38 0.45 4.28 16 6 N -0.70 -22.95 5.38 -466.65 -2.51 -25.47 16 7 C 0.60 20.60 7.32 86.58 0.63 21.23 16 8 O -0.58 -23.41 17.11 -4.15 -0.07 -23.48 16 9 C -0.27 -8.60 6.09 -18.75 -0.11 -8.71 16 10 C 0.10 2.38 7.21 42.04 0.30 2.68 16 11 C -0.09 -1.48 10.25 71.23 0.73 -0.75 16 12 N -0.53 -11.21 5.90 -181.38 -1.07 -12.29 16 13 H 0.44 5.59 8.96 -92.71 -0.83 4.76 16 14 C -0.04 -1.03 10.79 83.18 0.90 -0.13 16 15 C 0.07 2.24 7.22 39.31 0.28 2.53 16 16 N -0.64 -19.71 5.46 -299.23 -1.63 -21.34 16 17 C 0.50 14.79 7.91 87.66 0.69 15.48 16 18 C -0.16 -3.31 10.30 71.23 0.73 -2.57 16 19 O -0.57 -19.68 14.32 -3.11 -0.04 -19.73 16 20 N -0.72 -31.69 4.51 -322.95 -1.46 -33.14 16 21 C -0.21 -10.38 7.75 84.03 0.65 -9.73 16 22 H 0.08 3.72 7.32 -2.91 -0.02 3.70 16 23 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 24 N -0.96 -55.01 13.06 21.65 0.28 -54.73 16 25 Si 0.95 44.17 29.55 68.60 2.03 46.20 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.94 5.99 -2.39 -0.01 1.93 16 31 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.41 14.24 8.13 -92.71 -0.75 13.49 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.07 1.44 7.95 -2.39 -0.02 1.42 16 40 H 0.19 5.54 5.86 -2.91 -0.02 5.52 16 41 H 0.42 12.29 8.83 -92.70 -0.82 11.47 16 42 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.37 18.14 7.80 -92.71 -0.72 17.41 16 46 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -70.23 386.35 0.12 -70.11 By element: Atomic # 1 Polarization: 57.01 SS G_CDS: -2.08 Total: 54.93 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 6.68 Total: 18.93 kcal Atomic # 7 Polarization: -140.58 SS G_CDS: -6.39 Total: -146.97 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.12 Total: -43.21 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -70.23 0.12 -70.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698604498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.623 kcal (2) G-P(sol) polarization free energy of solvation -70.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds