Wall clock time and date at job start Tue Mar 31 2020 13:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47537 * 2 1 4 4 H 1.09003 * 109.47022 * 55.00041 * 3 2 1 5 5 C 1.52998 * 109.47443 * 175.00128 * 3 2 1 6 6 N 1.46500 * 109.47304 * 174.99839 * 5 3 2 7 7 C 1.34776 * 119.99630 * 179.97438 * 6 5 3 8 8 O 1.21633 * 120.00413 * 359.97438 * 7 6 5 9 9 C 1.47139 * 119.99360 * 179.97438 * 7 6 5 10 10 C 1.37828 * 126.99378 * 270.02141 * 9 7 6 11 11 C 1.50694 * 125.82086 * 0.02982 * 10 9 7 12 12 N 1.34594 * 108.35780 * 180.02562 * 10 9 7 13 13 H 0.97009 * 124.79375 * 179.97438 * 12 10 9 14 14 C 1.36772 * 110.41907 * 0.02562 * 12 10 9 15 15 C 1.35014 * 108.93372 * 359.71174 * 14 12 10 16 16 N 1.40441 * 126.86449 * 180.29385 * 15 14 12 17 17 C 1.34782 * 119.99737 * 0.16536 * 16 15 14 18 18 C 1.50694 * 120.00089 * 180.02562 * 17 16 15 19 19 O 1.21311 * 119.99790 * 0.02562 * 17 16 15 20 20 N 1.46498 * 109.47120 * 295.00185 * 3 2 1 21 21 C 1.36935 * 120.00239 * 84.99640 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.08994 * 109.47622 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46688 * 300.00429 * 1 2 3 31 31 H 1.09004 * 109.47282 * 59.99917 * 1 2 3 32 32 H 1.08995 * 109.47015 * 239.99503 * 2 1 3 33 33 H 1.08998 * 109.46879 * 119.99905 * 2 1 3 34 34 H 1.09008 * 109.46958 * 295.00113 * 5 3 2 35 35 H 1.08993 * 109.47007 * 54.99576 * 5 3 2 36 36 H 0.96999 * 119.99793 * 0.02562 * 6 5 3 37 37 H 1.09002 * 109.47052 * 89.99850 * 11 10 9 38 38 H 1.09005 * 109.47167 * 209.99514 * 11 10 9 39 39 H 1.08990 * 109.47326 * 329.99635 * 11 10 9 40 40 H 1.07992 * 125.53781 * 180.02562 * 14 12 10 41 41 H 0.96999 * 120.00054 * 180.17837 * 16 15 14 42 42 H 1.09002 * 109.47089 * 60.00060 * 18 17 16 43 43 H 1.08993 * 109.47530 * 180.02562 * 18 17 16 44 44 H 1.09008 * 109.47082 * 300.00397 * 18 17 16 45 45 H 0.97004 * 119.99747 * 265.00379 * 20 3 2 46 46 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0059 7 6 5.3858 3.0628 0.0867 8 8 6.1657 2.1455 0.2597 9 6 5.8863 4.4411 -0.0342 10 6 6.2585 5.0898 -1.1919 11 6 6.2243 4.5051 -2.5804 12 7 6.6576 6.3345 -0.8709 13 1 6.9703 6.9968 -1.5070 14 6 6.5610 6.5333 0.4788 15 6 6.0864 5.4081 1.0546 16 7 5.8365 5.2018 2.4211 17 6 6.0705 6.1913 3.3058 18 6 5.8029 5.9698 4.7722 19 8 6.4965 7.2602 2.9216 20 7 1.6525 2.0974 -1.2518 21 6 0.4158 2.6735 -1.3688 22 1 -0.2739 2.6453 -0.5381 23 6 0.0483 3.2936 -2.5551 24 7 0.8908 3.3328 -3.5656 25 14 -1.6386 4.0801 -2.7145 26 1 -1.7810 4.6763 -4.0671 27 1 -2.6870 3.0472 -2.5159 28 1 -1.7887 5.1418 -1.6872 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8500 1.0375 1.0961 35 1 3.9954 0.8310 -0.6659 36 1 3.4411 3.5482 -0.1309 37 1 5.2534 4.7036 -3.0344 38 1 7.0083 4.9602 -3.1857 39 1 6.3865 3.4287 -2.5255 40 1 6.8175 7.4443 0.9990 41 1 5.4957 4.3472 2.7282 42 1 6.4160 5.1438 5.1327 43 1 6.0493 6.8749 5.3273 44 1 4.7493 5.7305 4.9172 45 1 2.2720 2.1230 -1.9978 46 1 1.7669 2.9248 -3.4827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698604499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:47 Heat of formation + Delta-G solvation = -29.405858 kcal Electronic energy + Delta-G solvation = -27758.485890 eV Core-core repulsion = 23876.701824 eV Total energy + Delta-G solvation = -3881.784065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34678 -39.52577 -38.88590 -36.74951 -34.85451 -33.73185 -32.59851 -31.54218 -31.01686 -29.65366 -29.16064 -27.69258 -25.96633 -23.79971 -22.91744 -22.18481 -21.58098 -20.22808 -19.80397 -19.05561 -18.22594 -17.45066 -16.37135 -16.09329 -15.87990 -15.79035 -15.48776 -15.07871 -14.59137 -14.43732 -14.10671 -13.83441 -13.64408 -13.43861 -13.19058 -12.95568 -12.82242 -12.79568 -12.76376 -12.54284 -12.37024 -12.05028 -11.76283 -11.58834 -11.01761 -10.90933 -10.81657 -10.58619 -10.36860 -10.13578 -10.01064 -9.90718 -9.67711 -9.22374 -8.96868 -8.65745 -8.25826 -7.69918 -7.10908 -6.13600 -3.14687 2.06953 2.15454 2.79215 2.92632 3.02559 3.34674 3.48228 3.50224 3.67778 3.82170 4.52609 4.61756 4.82468 4.98204 5.10210 5.11120 5.24639 5.33324 5.37635 5.38964 5.53037 5.60017 5.62622 5.78569 5.83893 5.86975 5.89325 5.90161 5.93713 6.06411 6.14885 6.30853 6.47587 6.50910 6.54997 6.81937 6.86646 6.94301 6.95836 7.19710 7.35138 7.54579 7.76709 7.95525 8.00513 8.58832 8.70569 9.15603 10.02311 10.17425 11.33599 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.003705 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.979770 B = 7555.325983 C = 7966.187024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.054 0.946 5 C 0.112 3.888 6 N -0.705 5.705 7 C 0.590 3.410 8 O -0.551 6.551 9 C -0.236 4.236 10 C 0.093 3.907 11 C -0.095 4.095 12 N -0.545 5.545 13 H 0.419 0.581 14 C -0.028 4.028 15 C 0.088 3.912 16 N -0.638 5.638 17 C 0.508 3.492 18 C -0.171 4.171 19 O -0.539 6.539 20 N -0.731 5.731 21 C -0.326 4.326 22 H 0.067 0.933 23 C -0.042 4.042 24 N -0.942 5.942 25 Si 1.074 2.926 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.296 1.296 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.411 0.589 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.192 0.808 41 H 0.412 0.588 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.368 0.632 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.005 3.307 10.751 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.072 0.928 5 C -0.013 4.013 6 N -0.356 5.356 7 C 0.375 3.625 8 O -0.430 6.430 9 C -0.248 4.248 10 C -0.025 4.025 11 C -0.152 4.152 12 N -0.142 5.142 13 H 0.256 0.744 14 C -0.157 4.157 15 C -0.013 4.013 16 N -0.281 5.281 17 C 0.297 3.703 18 C -0.231 4.231 19 O -0.417 6.417 20 N -0.375 5.375 21 C -0.457 4.457 22 H 0.085 0.915 23 C -0.240 4.240 24 N -0.587 5.587 25 Si 0.905 3.095 26 H -0.212 1.212 27 H -0.223 1.223 28 H -0.224 1.224 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.248 0.752 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.208 0.792 41 H 0.247 0.753 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.201 0.799 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.693 4.371 9.764 14.436 hybrid contribution 0.726 -0.809 0.731 1.310 sum 10.419 3.562 10.495 15.211 Atomic orbital electron populations 1.21763 0.95605 0.99574 1.03341 1.22057 0.97086 0.98302 0.99940 1.20491 0.89838 0.92690 0.91087 0.92822 1.21705 0.95593 0.82855 1.01117 1.46094 1.07067 1.10516 1.71942 1.17374 0.82096 0.86958 0.76050 1.90755 1.56484 1.45913 1.49839 1.19899 1.17895 0.95242 0.91805 1.20312 1.01441 0.85208 0.95529 1.20479 1.03516 1.01742 0.89458 1.41368 1.52626 1.12137 1.08062 0.74427 1.22004 1.10914 1.00837 0.81990 1.17733 1.06896 0.94113 0.82526 1.42935 1.64030 1.16933 1.04244 1.20911 0.77310 0.83286 0.88783 1.21889 1.04427 1.05383 0.91375 1.90583 1.45121 1.25710 1.80256 1.42436 1.16777 1.66997 1.11265 1.19982 0.92551 1.32355 1.00827 0.91539 1.25653 1.05607 1.00385 0.92352 1.70886 1.08258 1.47358 1.32194 0.83314 0.74462 0.75907 0.75773 1.21165 1.22307 1.22372 0.94906 0.94137 0.89613 0.92707 0.93806 0.91827 0.91938 0.75242 0.89450 0.91162 0.89806 0.79165 0.75284 0.89123 0.88595 0.88985 0.79876 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.24 16 2 C -0.13 -2.26 5.61 -26.73 -0.15 -2.41 16 3 C 0.17 3.06 2.59 -67.93 -0.18 2.89 16 4 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 5 C 0.11 1.85 5.23 -4.04 -0.02 1.83 16 6 N -0.71 -11.73 5.38 -61.48 -0.33 -12.06 16 7 C 0.59 10.16 7.32 -12.65 -0.09 10.07 16 8 O -0.55 -11.02 17.11 5.25 0.09 -10.93 16 9 C -0.24 -3.74 6.09 -102.89 -0.63 -4.37 16 10 C 0.09 1.30 7.21 -81.53 -0.59 0.71 16 11 C -0.09 -1.16 10.25 36.00 0.37 -0.79 16 12 N -0.55 -6.46 5.90 -8.69 -0.05 -6.51 16 13 H 0.42 3.47 8.96 -40.82 -0.37 3.11 16 14 C -0.03 -0.38 10.79 -16.49 -0.18 -0.56 16 15 C 0.09 1.30 7.22 -81.51 -0.59 0.71 16 16 N -0.64 -7.95 5.46 -8.51 -0.05 -8.00 16 17 C 0.51 5.97 7.91 -10.99 -0.09 5.88 16 18 C -0.17 -1.20 10.32 36.00 0.37 -0.83 16 19 O -0.54 -8.00 14.30 5.53 0.08 -7.92 16 20 N -0.73 -16.23 4.50 -53.43 -0.24 -16.47 16 21 C -0.33 -8.23 7.75 -15.06 -0.12 -8.34 16 22 H 0.07 1.67 7.32 -52.48 -0.38 1.28 16 23 C -0.04 -1.13 5.50 -17.43 -0.10 -1.23 16 24 N -0.94 -27.27 13.70 55.49 0.76 -26.51 16 25 Si 1.07 24.71 29.92 -169.99 -5.09 19.63 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.30 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.30 -6.57 7.11 56.52 0.40 -6.16 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.09 1.81 5.99 -51.93 -0.31 1.50 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.41 7.25 8.12 -40.82 -0.33 6.92 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.12 7.95 -51.93 -0.41 0.71 16 40 H 0.19 2.60 5.86 -52.49 -0.31 2.29 16 41 H 0.41 4.46 8.83 -40.82 -0.36 4.10 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.64 8.12 -51.93 -0.42 0.21 16 44 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.37 8.69 6.63 -40.82 -0.27 8.42 16 46 H 0.26 7.27 6.77 -40.82 -0.28 7.00 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -33.23 384.63 -7.55 -40.78 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -6.89 Total: 20.84 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.64 Total: 1.34 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: 0.09 Total: -69.54 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.17 Total: -18.84 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.09 Total: 19.63 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.23 -7.55 -40.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698604499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.379 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds