Wall clock time and date at job start Tue Mar 31 2020 13:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47537 * 2 1 4 4 H 1.09003 * 109.47022 * 55.00041 * 3 2 1 5 5 C 1.52998 * 109.47443 * 175.00128 * 3 2 1 6 6 N 1.46500 * 109.47304 * 174.99839 * 5 3 2 7 7 C 1.34776 * 119.99630 * 179.97438 * 6 5 3 8 8 O 1.21633 * 120.00413 * 359.97438 * 7 6 5 9 9 C 1.47139 * 119.99360 * 179.97438 * 7 6 5 10 10 C 1.37828 * 126.99378 * 270.02141 * 9 7 6 11 11 C 1.50694 * 125.82086 * 0.02982 * 10 9 7 12 12 N 1.34594 * 108.35780 * 180.02562 * 10 9 7 13 13 H 0.97009 * 124.79375 * 179.97438 * 12 10 9 14 14 C 1.36772 * 110.41907 * 0.02562 * 12 10 9 15 15 C 1.35014 * 108.93372 * 359.71174 * 14 12 10 16 16 N 1.40441 * 126.86449 * 180.29385 * 15 14 12 17 17 C 1.34782 * 119.99737 * 0.16536 * 16 15 14 18 18 C 1.50694 * 120.00089 * 180.02562 * 17 16 15 19 19 O 1.21311 * 119.99790 * 0.02562 * 17 16 15 20 20 N 1.46498 * 109.47120 * 295.00185 * 3 2 1 21 21 C 1.36935 * 120.00239 * 84.99640 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.08994 * 109.47622 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46688 * 300.00429 * 1 2 3 31 31 H 1.09004 * 109.47282 * 59.99917 * 1 2 3 32 32 H 1.08995 * 109.47015 * 239.99503 * 2 1 3 33 33 H 1.08998 * 109.46879 * 119.99905 * 2 1 3 34 34 H 1.09008 * 109.46958 * 295.00113 * 5 3 2 35 35 H 1.08993 * 109.47007 * 54.99576 * 5 3 2 36 36 H 0.96999 * 119.99793 * 0.02562 * 6 5 3 37 37 H 1.09002 * 109.47052 * 89.99850 * 11 10 9 38 38 H 1.09005 * 109.47167 * 209.99514 * 11 10 9 39 39 H 1.08990 * 109.47326 * 329.99635 * 11 10 9 40 40 H 1.07992 * 125.53781 * 180.02562 * 14 12 10 41 41 H 0.96999 * 120.00054 * 180.17837 * 16 15 14 42 42 H 1.09002 * 109.47089 * 60.00060 * 18 17 16 43 43 H 1.08993 * 109.47530 * 180.02562 * 18 17 16 44 44 H 1.09008 * 109.47082 * 300.00397 * 18 17 16 45 45 H 0.97004 * 119.99747 * 265.00379 * 20 3 2 46 46 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0059 7 6 5.3858 3.0628 0.0867 8 8 6.1657 2.1455 0.2597 9 6 5.8863 4.4411 -0.0342 10 6 6.2585 5.0898 -1.1919 11 6 6.2243 4.5051 -2.5804 12 7 6.6576 6.3345 -0.8709 13 1 6.9703 6.9968 -1.5070 14 6 6.5610 6.5333 0.4788 15 6 6.0864 5.4081 1.0546 16 7 5.8365 5.2018 2.4211 17 6 6.0705 6.1913 3.3058 18 6 5.8029 5.9698 4.7722 19 8 6.4965 7.2602 2.9216 20 7 1.6525 2.0974 -1.2518 21 6 0.4158 2.6735 -1.3688 22 1 -0.2739 2.6453 -0.5381 23 6 0.0483 3.2936 -2.5551 24 7 0.8908 3.3328 -3.5656 25 14 -1.6386 4.0801 -2.7145 26 1 -1.7810 4.6763 -4.0671 27 1 -2.6870 3.0472 -2.5159 28 1 -1.7887 5.1418 -1.6872 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8500 1.0375 1.0961 35 1 3.9954 0.8310 -0.6659 36 1 3.4411 3.5482 -0.1309 37 1 5.2534 4.7036 -3.0344 38 1 7.0083 4.9602 -3.1857 39 1 6.3865 3.4287 -2.5255 40 1 6.8175 7.4443 0.9990 41 1 5.4957 4.3472 2.7282 42 1 6.4160 5.1438 5.1327 43 1 6.0493 6.8749 5.3273 44 1 4.7493 5.7305 4.9172 45 1 2.2720 2.1230 -1.9978 46 1 1.7669 2.9248 -3.4827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698604499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:46 Heat of formation + Delta-G solvation = -53.852698 kcal Electronic energy + Delta-G solvation = -27759.545984 eV Core-core repulsion = 23876.701824 eV Total energy + Delta-G solvation = -3882.844160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.41938 -40.56625 -40.20424 -38.32987 -35.86496 -35.34175 -34.27508 -32.58311 -31.98245 -31.27899 -30.14130 -29.15141 -27.06526 -25.52339 -24.48101 -23.13918 -22.86506 -21.71432 -20.86800 -20.30249 -19.43940 -19.20412 -17.49431 -17.25821 -17.16471 -16.86683 -16.58524 -16.45582 -16.15440 -15.65839 -15.47569 -15.43051 -14.87810 -14.72696 -14.66062 -14.21221 -13.98304 -13.80055 -13.64965 -13.48370 -13.42450 -13.17959 -13.10453 -12.82680 -12.69226 -12.55345 -12.09483 -11.98974 -11.92548 -11.80759 -11.52101 -11.17738 -11.13049 -10.94682 -10.82670 -10.06087 -9.39162 -9.02567 -8.75619 -8.22916 -5.17759 1.02359 1.09558 1.51033 1.62547 1.70211 1.85570 1.94352 1.99405 2.26500 2.59716 2.76788 3.52136 3.73832 3.76338 3.79334 3.87259 4.00024 4.18081 4.31330 4.35452 4.43213 4.49925 4.52163 4.61822 4.63600 4.68317 4.75232 4.80947 4.85631 4.89476 5.04820 5.05185 5.08730 5.13682 5.16808 5.43319 5.52470 5.67623 5.75724 5.76231 5.87978 6.42612 6.55215 6.62073 6.62916 7.09236 7.18737 7.21774 8.09436 8.21905 9.27691 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.003705 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.979770 B = 7555.325983 C = 7966.187024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.171 3.829 4 H 0.055 0.945 5 C 0.120 3.880 6 N -0.700 5.700 7 C 0.598 3.402 8 O -0.582 6.582 9 C -0.269 4.269 10 C 0.094 3.906 11 C -0.090 4.090 12 N -0.528 5.528 13 H 0.436 0.564 14 C -0.032 4.032 15 C 0.072 3.928 16 N -0.638 5.638 17 C 0.502 3.498 18 C -0.162 4.162 19 O -0.575 6.575 20 N -0.737 5.737 21 C -0.304 4.304 22 H 0.069 0.931 23 C -0.102 4.102 24 N -0.978 5.978 25 Si 1.115 2.885 26 H -0.301 1.301 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.407 0.593 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.193 0.807 41 H 0.418 0.582 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.359 0.641 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.822 3.181 12.541 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.062 3.938 4 H 0.073 0.927 5 C -0.004 4.004 6 N -0.350 5.350 7 C 0.385 3.615 8 O -0.463 6.463 9 C -0.281 4.281 10 C -0.026 4.026 11 C -0.148 4.148 12 N -0.126 5.126 13 H 0.276 0.724 14 C -0.162 4.162 15 C -0.028 4.028 16 N -0.281 5.281 17 C 0.293 3.707 18 C -0.221 4.221 19 O -0.454 6.454 20 N -0.380 5.380 21 C -0.435 4.435 22 H 0.087 0.913 23 C -0.293 4.293 24 N -0.627 5.627 25 Si 0.943 3.057 26 H -0.227 1.227 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.243 0.757 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.210 0.790 41 H 0.255 0.745 42 H 0.130 0.870 43 H 0.119 0.881 44 H 0.129 0.871 45 H 0.191 0.809 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.506 4.226 11.610 15.589 hybrid contribution 0.813 -0.822 0.250 1.183 sum 10.319 3.404 11.861 16.085 Atomic orbital electron populations 1.21683 0.95989 1.00506 1.01720 1.21979 0.96622 0.97234 1.01089 1.20633 0.90862 0.93157 0.89110 0.92659 1.21639 0.94234 0.82782 1.01794 1.46061 1.06933 1.10370 1.71593 1.17507 0.81750 0.87267 0.75014 1.90729 1.57072 1.47034 1.51432 1.19941 1.19947 0.95057 0.93174 1.20540 1.00577 0.85717 0.95735 1.20473 1.04215 1.01027 0.89044 1.41325 1.51476 1.11843 1.07915 0.72367 1.22087 1.10852 1.00663 0.82613 1.18013 1.07104 0.94115 0.83588 1.43063 1.63969 1.17558 1.03551 1.21827 0.76091 0.82419 0.90367 1.21931 1.06037 1.06534 0.87588 1.90559 1.46738 1.27051 1.81101 1.42551 1.15767 1.67266 1.12413 1.20201 0.93177 1.29988 1.00157 0.91261 1.26727 1.07906 1.01989 0.92711 1.70981 1.08488 1.49799 1.33458 0.82754 0.71973 0.75831 0.75192 1.22744 1.20896 1.20836 0.92837 0.93315 0.93448 0.93686 0.90457 0.89790 0.92946 0.75727 0.90285 0.87919 0.91208 0.78993 0.74543 0.86962 0.88062 0.87081 0.80914 0.94518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.18 71.98 0.66 -4.08 16 2 C -0.13 -4.10 5.61 30.59 0.17 -3.92 16 3 C 0.17 5.97 2.59 44.99 0.12 6.09 16 4 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 5 C 0.12 3.84 5.23 86.38 0.45 4.29 16 6 N -0.70 -23.12 5.38 -466.65 -2.51 -25.63 16 7 C 0.60 20.61 7.32 86.58 0.63 21.25 16 8 O -0.58 -23.26 17.11 -4.14 -0.07 -23.33 16 9 C -0.27 -8.51 6.09 -18.74 -0.11 -8.63 16 10 C 0.09 2.58 7.21 42.04 0.30 2.88 16 11 C -0.09 -2.17 10.25 71.23 0.73 -1.44 16 12 N -0.53 -12.03 5.90 -181.39 -1.07 -13.10 16 13 H 0.44 6.59 8.96 -92.70 -0.83 5.76 16 14 C -0.03 -0.86 10.79 83.18 0.90 0.04 16 15 C 0.07 2.13 7.22 39.31 0.28 2.41 16 16 N -0.64 -15.44 5.46 -299.22 -1.63 -17.07 16 17 C 0.50 11.27 7.91 87.65 0.69 11.97 16 18 C -0.16 -1.89 10.32 71.23 0.74 -1.16 16 19 O -0.57 -16.81 14.30 -3.13 -0.04 -16.85 16 20 N -0.74 -32.69 4.50 -322.95 -1.45 -34.14 16 21 C -0.30 -15.22 7.75 84.03 0.65 -14.57 16 22 H 0.07 3.40 7.32 -2.91 -0.02 3.38 16 23 C -0.10 -5.50 5.50 84.86 0.47 -5.03 16 24 N -0.98 -57.78 13.70 21.65 0.30 -57.48 16 25 Si 1.11 49.91 29.92 68.60 2.05 51.96 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 28 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.05 1.95 5.99 -2.38 -0.01 1.94 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.41 14.37 8.12 -92.71 -0.75 13.61 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.07 1.88 7.95 -2.39 -0.02 1.86 16 40 H 0.19 5.20 5.86 -2.91 -0.02 5.19 16 41 H 0.42 8.67 8.83 -92.71 -0.82 7.85 16 42 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 1.12 8.12 -2.39 -0.02 1.10 16 44 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.36 17.27 6.63 -92.71 -0.61 16.66 16 46 H 0.24 14.36 6.77 -92.71 -0.63 13.74 16 Total: -1.00 -72.47 384.63 0.41 -72.05 By element: Atomic # 1 Polarization: 55.33 SS G_CDS: -1.83 Total: 53.50 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 6.68 Total: 10.10 kcal Atomic # 7 Polarization: -141.05 SS G_CDS: -6.38 Total: -147.43 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.12 Total: -40.18 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Total: -72.47 0.41 -72.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698604499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.200 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds