Wall clock time and date at job start Tue Mar 31 2020 13:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46878 * 2 1 4 4 H 1.09000 * 109.46980 * 302.96407 * 3 2 1 5 5 C 1.53001 * 109.47168 * 182.96474 * 3 2 1 6 6 N 1.46493 * 109.47252 * 185.00019 * 5 3 2 7 7 C 1.34779 * 120.00065 * 180.02562 * 6 5 3 8 8 O 1.21621 * 119.99694 * 359.97438 * 7 6 5 9 9 C 1.47258 * 119.99725 * 180.02562 * 7 6 5 10 10 C 1.36770 * 126.94817 * 0.02562 * 9 7 6 11 11 N 1.34658 * 108.39884 * 179.97438 * 10 9 7 12 12 H 0.97002 * 124.84856 * 180.02562 * 11 10 9 13 13 C 1.36445 * 110.29929 * 0.02562 * 11 10 9 14 14 C 1.34488 * 108.85521 * 359.75196 * 13 11 10 15 15 C 1.50703 * 126.83255 * 180.25385 * 14 13 11 16 16 N 1.46898 * 109.47026 * 62.96609 * 3 2 1 17 17 C 1.46896 * 111.00608 * 65.52066 * 16 3 2 18 18 C 1.50696 * 109.47732 * 182.18146 * 17 16 3 19 19 O 1.21295 * 119.99619 * 0.02562 * 18 17 16 20 20 N 1.34766 * 120.00393 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00499 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99853 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00444 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99906 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 119.99981 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47523 * 89.99507 * 25 23 21 27 27 H 1.48498 * 109.47095 * 209.99641 * 25 23 21 28 28 H 1.48506 * 109.46982 * 329.99320 * 25 23 21 29 29 H 1.09005 * 109.46808 * 174.77741 * 1 2 3 30 30 H 1.08995 * 109.47498 * 294.77883 * 1 2 3 31 31 H 1.09007 * 109.47493 * 54.78034 * 1 2 3 32 32 H 1.08992 * 109.47575 * 239.99928 * 2 1 3 33 33 H 1.09005 * 109.47213 * 119.99350 * 2 1 3 34 34 H 1.09007 * 109.46713 * 304.99931 * 5 3 2 35 35 H 1.09000 * 109.46935 * 64.99491 * 5 3 2 36 36 H 0.97008 * 119.99762 * 359.97438 * 6 5 3 37 37 H 1.08000 * 125.79876 * 359.94842 * 10 9 7 38 38 H 1.07998 * 125.56992 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.46586 * 270.14345 * 15 14 13 40 40 H 1.08998 * 109.47345 * 30.14173 * 15 14 13 41 41 H 1.09003 * 109.46853 * 150.14811 * 15 14 13 42 42 H 1.00903 * 111.00109 * 189.47810 * 16 3 2 43 43 H 1.09007 * 109.46819 * 302.18514 * 17 16 3 44 44 H 1.09000 * 109.47087 * 62.18032 * 17 16 3 45 45 H 0.97001 * 119.99890 * 0.02562 * 20 18 17 46 46 H 0.97002 * 119.99587 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6338 1.9715 -0.8622 5 6 3.5681 1.4433 -0.0746 6 7 4.0623 2.8171 0.0455 7 6 5.3869 3.0627 0.0060 8 8 6.1720 2.1437 -0.1288 9 6 5.8836 4.4437 0.1274 10 6 5.1333 5.5764 0.2845 11 7 5.9666 6.6318 0.3552 12 1 5.6855 7.5534 0.4672 13 6 7.2628 6.2196 0.2469 14 6 7.2834 4.8819 0.1092 15 6 8.5020 4.0074 -0.0370 16 7 1.6096 2.1140 1.2336 17 6 2.2438 1.5078 2.4118 18 6 1.7386 2.1859 3.6592 19 8 0.9293 3.0855 3.5750 20 7 2.1851 1.7922 4.8682 21 6 1.7258 2.4094 6.0030 22 1 1.0059 3.2110 5.9280 23 6 2.1858 2.0031 7.2496 24 7 1.7459 2.5952 8.3372 25 14 3.4304 0.6163 7.3794 26 1 4.8043 1.1779 7.3314 27 1 3.2353 -0.1054 8.6624 28 1 3.2411 -0.3263 6.2475 29 1 -0.3633 -1.0235 -0.0935 30 1 -0.3634 0.4307 0.9330 31 1 -0.3634 0.5927 -0.8396 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9718 0.8396 0.7383 35 1 3.8854 1.0252 -1.0299 36 1 3.4360 3.5502 0.1527 37 1 4.0556 5.6174 0.3418 38 1 8.1305 6.8621 0.2716 39 1 8.7496 3.9031 -1.0934 40 1 9.3410 4.4623 0.4896 41 1 8.2967 3.0244 0.3869 42 1 1.7981 3.1044 1.1910 43 1 1.9987 0.4464 2.4506 44 1 3.3250 1.6287 2.3451 45 1 2.8319 1.0725 4.9356 46 1 2.0668 2.3113 9.2075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698624266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:37 Heat of formation + Delta-G solvation = -56.843849 kcal Electronic energy + Delta-G solvation = -27458.222794 eV Core-core repulsion = 23575.248928 eV Total energy + Delta-G solvation = -3882.973866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.10535 -40.74305 -40.00955 -38.50608 -36.00329 -34.98865 -33.75852 -33.34385 -33.07565 -31.24876 -29.41444 -28.01321 -27.44901 -25.90013 -24.77579 -23.16559 -21.66276 -21.02727 -20.80964 -20.31537 -19.99881 -19.21129 -18.28441 -17.40479 -17.09887 -16.80264 -16.53390 -16.36267 -15.77139 -15.50933 -15.12469 -14.99106 -14.95842 -14.72599 -14.48530 -14.29628 -14.25669 -14.03937 -13.92663 -13.65105 -13.58809 -13.28899 -13.14356 -12.91737 -12.62613 -12.42958 -12.35074 -12.23232 -12.00445 -11.76405 -11.54156 -11.48856 -10.91729 -10.42885 -10.24757 -10.16686 -9.54690 -9.36024 -9.19157 -8.42507 -6.02044 0.76837 1.28285 1.32302 1.40531 1.48998 1.95179 2.18494 2.20282 2.45730 2.57130 2.74624 3.14428 3.42494 3.73889 3.97167 3.99359 4.07987 4.13067 4.27067 4.29748 4.37746 4.43833 4.45169 4.55937 4.65665 4.70810 4.80123 4.86749 4.91858 4.97789 5.02501 5.14931 5.22816 5.30984 5.39914 5.45708 5.51434 5.61680 5.81860 5.89700 5.95595 6.01635 6.38739 6.56578 6.58693 6.68166 6.87556 7.32672 7.39518 7.94936 8.74898 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008664 B = 0.004003 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.871576 B = 6992.876590 C = 8798.108225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.088 3.912 4 H 0.111 0.889 5 C 0.087 3.913 6 N -0.721 5.721 7 C 0.585 3.415 8 O -0.586 6.586 9 C -0.272 4.272 10 C 0.064 3.936 11 N -0.534 5.534 12 H 0.437 0.563 13 C -0.013 4.013 14 C -0.151 4.151 15 C -0.077 4.077 16 N -0.660 5.660 17 C 0.059 3.941 18 C 0.453 3.547 19 O -0.606 6.606 20 N -0.594 5.594 21 C -0.325 4.325 22 H 0.060 0.940 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.955 3.045 26 H -0.261 1.261 27 H -0.272 1.272 28 H -0.236 1.236 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.404 0.596 37 H 0.197 0.803 38 H 0.201 0.799 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.345 0.655 43 H 0.109 0.891 44 H 0.062 0.938 45 H 0.386 0.614 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.839 2.191 -21.788 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C -0.022 4.022 4 H 0.129 0.871 5 C -0.039 4.039 6 N -0.373 5.373 7 C 0.375 3.625 8 O -0.468 6.468 9 C -0.283 4.283 10 C -0.075 4.075 11 N -0.129 5.129 12 H 0.277 0.723 13 C -0.141 4.141 14 C -0.157 4.157 15 C -0.134 4.134 16 N -0.292 5.292 17 C -0.073 4.073 18 C 0.241 3.759 19 O -0.490 6.490 20 N -0.236 5.236 21 C -0.454 4.454 22 H 0.079 0.921 23 C -0.209 4.209 24 N -0.573 5.573 25 Si 0.776 3.224 26 H -0.186 1.186 27 H -0.197 1.197 28 H -0.159 1.159 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.241 0.759 37 H 0.214 0.786 38 H 0.218 0.782 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.165 0.835 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.221 0.779 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.225 1.950 -21.645 23.610 hybrid contribution 0.932 0.402 0.918 1.369 sum 10.157 2.353 -20.727 23.202 Atomic orbital electron populations 1.21573 0.95034 1.01144 1.01827 1.21540 0.96803 0.93934 1.02856 1.22039 0.89960 0.97578 0.92666 0.87118 1.22122 0.96334 0.83005 1.02425 1.45732 1.06637 1.09927 1.75014 1.17742 0.81896 0.87997 0.74858 1.90700 1.56645 1.47110 1.52314 1.20471 0.94962 0.92095 1.20765 1.22294 0.97437 0.85949 1.01829 1.41566 1.05858 1.10125 1.55361 0.72306 1.22014 0.87823 0.94762 1.09471 1.20831 0.93355 0.94165 1.07310 1.20096 0.93776 0.98031 1.01539 1.60214 1.60991 1.07683 1.00309 1.21630 0.97207 1.00279 0.88226 1.20864 0.84175 0.85763 0.85110 1.90532 1.37304 1.34066 1.87131 1.42083 1.41423 1.34521 1.05562 1.19012 1.24692 1.17254 0.84421 0.92146 1.25978 1.00061 1.00958 0.93897 1.69787 1.45202 1.43473 0.98807 0.85493 0.78551 0.78605 0.79750 1.18618 1.19705 1.15899 0.92561 0.94035 0.92245 0.89405 0.92196 0.92452 0.90587 0.75913 0.78597 0.78226 0.91906 0.90447 0.93439 0.83527 0.87265 0.92002 0.77917 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.71 71.98 0.70 -2.00 16 2 C -0.11 -1.99 5.29 30.60 0.16 -1.82 16 3 C 0.09 1.62 2.73 44.92 0.12 1.75 16 4 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 5 C 0.09 1.80 4.47 86.38 0.39 2.19 16 6 N -0.72 -15.74 5.30 -466.54 -2.47 -18.22 16 7 C 0.58 16.55 7.81 86.61 0.68 17.23 16 8 O -0.59 -20.83 15.32 -4.10 -0.06 -20.89 16 9 C -0.27 -6.71 6.29 -19.04 -0.12 -6.83 16 10 C 0.06 1.08 11.40 83.92 0.96 2.04 16 11 N -0.53 -6.83 5.90 -194.56 -1.15 -7.98 16 12 H 0.44 2.38 8.96 -92.71 -0.83 1.55 16 13 C -0.01 -0.20 11.82 83.12 0.98 0.79 16 14 C -0.15 -3.49 6.35 -18.51 -0.12 -3.60 16 15 C -0.08 -1.75 9.98 71.24 0.71 -1.04 16 16 N -0.66 -17.10 5.37 -495.57 -2.66 -19.76 16 17 C 0.06 1.81 5.32 85.56 0.46 2.27 16 18 C 0.45 20.21 7.82 87.66 0.69 20.90 16 19 O -0.61 -32.28 15.83 -3.08 -0.05 -32.33 16 20 N -0.59 -28.44 5.09 -307.00 -1.56 -30.00 16 21 C -0.32 -19.03 10.16 84.04 0.85 -18.18 16 22 H 0.06 4.17 7.39 -2.91 -0.02 4.15 16 23 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 24 N -0.93 -56.27 13.96 21.66 0.30 -55.97 16 25 Si 0.96 40.04 27.74 68.60 1.90 41.95 16 26 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.24 -8.53 6.52 99.48 0.65 -7.88 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.04 1.06 7.85 -2.39 -0.02 1.04 16 31 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.14 6.36 -2.38 -0.02 1.13 16 34 H 0.06 1.39 6.69 -2.38 -0.02 1.37 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.40 7.11 6.17 -92.70 -0.57 6.54 16 37 H 0.20 2.15 7.45 -2.91 -0.02 2.13 16 38 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.05 1.36 6.86 -2.39 -0.02 1.34 16 42 H 0.35 8.95 7.24 -89.69 -0.65 8.30 16 43 H 0.11 3.01 6.30 -2.38 -0.02 3.00 16 44 H 0.06 1.81 6.41 -2.39 -0.02 1.79 16 45 H 0.39 15.87 5.76 -92.71 -0.53 15.34 16 46 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -84.51 376.69 -0.43 -84.94 By element: Atomic # 1 Polarization: 46.28 SS G_CDS: -1.59 Total: 44.68 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 6.92 Total: 13.58 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -7.55 Total: -131.92 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.11 Total: -53.22 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.90 Total: 41.95 kcal Total: -84.51 -0.43 -84.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698624266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.092 kcal (2) G-P(sol) polarization free energy of solvation -84.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds