Wall clock time and date at job start Tue Mar 31 2020 13:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21628 * 119.99735 * 359.97438 * 7 6 5 9 9 C 1.47263 * 120.00098 * 180.02562 * 7 6 5 10 10 C 1.36766 * 126.94526 * 0.02562 * 9 7 6 11 11 N 1.34651 * 108.40002 * 179.97438 * 10 9 7 12 12 H 0.96999 * 124.85314 * 180.02562 * 11 10 9 13 13 C 1.36453 * 110.29908 * 0.02562 * 11 10 9 14 14 C 1.34489 * 108.85160 * 359.74883 * 13 11 10 15 15 C 1.50696 * 126.83218 * 180.25348 * 14 13 11 16 16 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 17 17 C 1.46901 * 110.99814 * 300.92314 * 16 3 2 18 18 C 1.50692 * 109.47239 * 185.67747 * 17 16 3 19 19 O 1.21297 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00418 * 179.72333 * 18 17 16 21 21 C 1.37095 * 120.00548 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99663 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00244 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99701 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00052 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47062 * 90.00572 * 25 23 21 27 27 H 1.48498 * 109.47263 * 210.00397 * 25 23 21 28 28 H 1.48498 * 109.47134 * 330.00733 * 25 23 21 29 29 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 30 30 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 31 31 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 32 32 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 33 33 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 34 34 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 35 35 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 36 36 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 37 37 H 1.08003 * 125.79943 * 359.93879 * 10 9 7 38 38 H 1.07999 * 125.57162 * 179.97438 * 13 11 10 39 39 H 1.09003 * 109.47359 * 270.14742 * 15 14 13 40 40 H 1.09006 * 109.46933 * 30.14926 * 15 14 13 41 41 H 1.09006 * 109.47371 * 150.14572 * 15 14 13 42 42 H 1.00897 * 110.99887 * 64.87330 * 16 3 2 43 43 H 1.09003 * 109.46892 * 65.67283 * 17 16 3 44 44 H 1.09004 * 109.47007 * 305.68019 * 17 16 3 45 45 H 0.97007 * 119.99235 * 0.02562 * 20 18 17 46 46 H 0.97002 * 119.99685 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1640 2.1461 0.2830 9 6 5.8868 4.4424 -0.0160 10 6 5.1435 5.5729 -0.2161 11 7 5.9792 6.6275 -0.2672 12 1 5.7029 7.5477 -0.4006 13 6 7.2702 6.2167 -0.1046 14 6 7.2842 4.8821 0.0603 15 6 8.4947 4.0112 0.2777 16 7 1.6596 2.0963 -1.2593 17 6 2.2180 1.3802 -2.4140 18 6 1.9261 2.1536 -3.6739 19 8 1.3135 3.1989 -3.6157 20 7 2.3508 1.6871 -4.8648 21 6 2.0848 2.3904 -6.0111 22 1 1.5351 3.3186 -5.9598 23 6 2.5232 1.9096 -7.2389 24 7 3.1925 0.7804 -7.3012 25 14 2.1613 2.8683 -8.8006 26 1 3.2664 3.8255 -9.0611 27 1 2.0423 1.9270 -9.9430 28 1 0.8877 3.6146 -8.6394 29 1 -0.3633 0.4961 0.8999 30 1 -0.3632 0.5314 -0.8797 31 1 -0.3633 -1.0274 -0.0205 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1087 35 1 3.9997 0.8294 -0.6518 36 1 3.4419 3.5480 -0.1267 37 1 4.0689 5.6129 -0.3166 38 1 8.1385 6.8589 -0.1045 39 1 8.8810 3.6788 -0.6859 40 1 9.2631 4.5811 0.8002 41 1 8.2156 3.1439 0.8761 42 1 0.6569 2.1788 -1.3353 43 1 1.7652 0.3910 -2.4816 44 1 3.2964 1.2785 -2.2916 45 1 2.8442 0.8531 -4.9109 46 1 3.4982 0.4446 -8.1584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698624267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:41 Heat of formation + Delta-G solvation = -36.084697 kcal Electronic energy + Delta-G solvation = -27350.656177 eV Core-core repulsion = 23468.582495 eV Total energy + Delta-G solvation = -3882.073681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15054 -39.29103 -38.31731 -37.15020 -34.00885 -33.78971 -32.38782 -31.75903 -31.14144 -30.27173 -28.22716 -26.52274 -26.47717 -24.29630 -23.73127 -22.15712 -20.39541 -19.81145 -19.29615 -18.80312 -18.28648 -17.86738 -16.77866 -16.16372 -15.59479 -15.38141 -15.01081 -14.84075 -14.30880 -14.17744 -14.08094 -13.93961 -13.77061 -13.49134 -13.42250 -13.11465 -12.93334 -12.62199 -12.42834 -12.30230 -12.27696 -11.86667 -11.73512 -11.48711 -11.39419 -11.26480 -11.05662 -10.82399 -10.71987 -10.38766 -10.19874 -9.60956 -9.48402 -8.85718 -8.53024 -8.45946 -8.27638 -8.04556 -7.93331 -6.39208 -3.80039 1.84791 2.41481 3.17221 3.18666 3.27054 3.32356 3.49526 3.78957 3.94115 4.12857 4.38199 4.69325 4.85423 4.90724 5.01458 5.05323 5.12563 5.20520 5.27824 5.33696 5.39435 5.46982 5.58141 5.63631 5.74010 5.81407 5.83948 5.86068 5.90803 5.92086 6.05505 6.11836 6.14887 6.23911 6.30405 6.30973 6.71866 6.80787 6.90104 7.18564 7.39773 7.56848 7.61253 7.90326 8.08486 8.61299 8.63910 9.20218 9.57528 10.08869 10.78576 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008487 B = 0.003840 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3298.525165 B = 7289.562031 C = 9455.158160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.089 0.911 5 C 0.129 3.871 6 N -0.714 5.714 7 C 0.587 3.413 8 O -0.553 6.553 9 C -0.226 4.226 10 C 0.054 3.946 11 N -0.550 5.550 12 H 0.417 0.583 13 C -0.031 4.031 14 C -0.111 4.111 15 C -0.082 4.082 16 N -0.658 5.658 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.585 6.585 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.407 0.593 37 H 0.174 0.826 38 H 0.167 0.833 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.351 0.649 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.854 5.227 17.487 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.037 4.037 4 H 0.107 0.893 5 C 0.005 3.995 6 N -0.366 5.366 7 C 0.376 3.624 8 O -0.433 6.433 9 C -0.237 4.237 10 C -0.083 4.083 11 N -0.144 5.144 12 H 0.253 0.747 13 C -0.158 4.158 14 C -0.117 4.117 15 C -0.139 4.139 16 N -0.291 5.291 17 C -0.089 4.089 18 C 0.229 3.771 19 O -0.469 6.469 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.195 1.195 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.242 0.758 37 H 0.191 0.809 38 H 0.184 0.816 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.171 0.829 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.560 5.766 17.480 18.747 hybrid contribution -0.896 -0.143 -1.212 1.514 sum 2.664 5.624 16.268 17.418 Atomic orbital electron populations 1.21755 0.95351 1.01924 1.01955 1.22213 0.96673 0.98074 1.03089 1.21924 0.94542 0.93450 0.93811 0.89330 1.21344 0.92599 0.83982 1.01606 1.45631 1.07169 1.09795 1.73979 1.17398 0.81760 0.87410 0.75825 1.90717 1.56120 1.45863 1.50560 1.20364 0.93778 0.92248 1.17295 1.22018 0.96425 0.86390 1.03462 1.41478 1.06586 1.09470 1.56898 0.74703 1.21537 0.86757 0.95545 1.12004 1.20544 0.93532 0.92680 1.04951 1.20177 0.93101 0.98745 1.01891 1.60198 1.17889 1.51328 0.99637 1.21763 1.01077 0.95368 0.90684 1.19801 0.85173 0.87839 0.84319 1.90503 1.45163 1.24782 1.86478 1.41866 1.49646 1.23330 1.05211 1.19674 1.33551 1.06175 0.83473 0.88010 1.25253 0.96773 0.96461 0.99433 1.69616 1.37712 1.20048 1.26826 0.85877 0.78957 0.78957 0.80597 1.20440 1.20940 1.19468 0.92608 0.92475 0.92549 0.91029 0.91320 0.91457 0.91494 0.75780 0.80896 0.81611 0.91828 0.92642 0.90397 0.82877 0.93516 0.89394 0.77519 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.71 37.16 0.36 -1.10 16 2 C -0.16 -1.63 5.17 -26.73 -0.14 -1.77 16 3 C 0.07 0.82 2.70 -67.71 -0.18 0.64 16 4 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 5 C 0.13 1.65 4.70 -4.05 -0.02 1.63 16 6 N -0.71 -9.78 5.38 -61.44 -0.33 -10.11 16 7 C 0.59 9.44 7.81 -12.59 -0.10 9.34 16 8 O -0.55 -10.49 15.32 5.25 0.08 -10.41 16 9 C -0.23 -3.25 6.29 -103.35 -0.65 -3.90 16 10 C 0.05 0.61 11.40 -16.85 -0.19 0.41 16 11 N -0.55 -5.03 5.90 -12.85 -0.08 -5.10 16 12 H 0.42 2.33 8.96 -40.82 -0.37 1.97 16 13 C -0.03 -0.32 11.82 -16.82 -0.20 -0.52 16 14 C -0.11 -1.47 6.35 -102.54 -0.65 -2.13 16 15 C -0.08 -1.02 9.97 36.00 0.36 -0.66 16 16 N -0.66 -9.46 5.36 -107.99 -0.58 -10.04 16 17 C 0.04 0.75 5.34 -4.98 -0.03 0.72 16 18 C 0.44 10.32 7.83 -10.99 -0.09 10.23 16 19 O -0.58 -15.39 15.90 5.54 0.09 -15.30 16 20 N -0.56 -14.40 5.29 -10.97 -0.06 -14.46 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 25 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.62 6.85 -51.93 -0.36 0.26 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.81 6.23 -51.93 -0.32 0.49 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.97 6.57 -51.92 -0.34 0.63 16 36 H 0.41 5.13 7.08 -40.82 -0.29 4.85 16 37 H 0.17 1.57 7.45 -52.48 -0.39 1.18 16 38 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.11 6.86 -51.93 -0.36 0.75 16 42 H 0.35 5.14 7.23 -39.29 -0.28 4.86 16 43 H 0.05 0.74 6.49 -51.93 -0.34 0.40 16 44 H 0.09 1.54 6.15 -51.93 -0.32 1.22 16 45 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -34.75 379.64 -7.79 -42.54 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -6.58 Total: 20.22 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -1.76 Total: 4.89 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -0.32 Total: -63.85 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.17 Total: -25.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.75 -7.79 -42.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698624267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.458 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds