Wall clock time and date at job start Tue Mar 31 2020 13:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21628 * 119.99735 * 359.97438 * 7 6 5 9 9 C 1.47263 * 120.00098 * 180.02562 * 7 6 5 10 10 C 1.36766 * 126.94526 * 0.02562 * 9 7 6 11 11 N 1.34651 * 108.40002 * 179.97438 * 10 9 7 12 12 H 0.96999 * 124.85314 * 180.02562 * 11 10 9 13 13 C 1.36453 * 110.29908 * 0.02562 * 11 10 9 14 14 C 1.34489 * 108.85160 * 359.74883 * 13 11 10 15 15 C 1.50696 * 126.83218 * 180.25348 * 14 13 11 16 16 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 17 17 C 1.46901 * 110.99814 * 300.92314 * 16 3 2 18 18 C 1.50692 * 109.47239 * 185.67747 * 17 16 3 19 19 O 1.21297 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00418 * 179.72333 * 18 17 16 21 21 C 1.37095 * 120.00548 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99663 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00244 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99701 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00052 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47062 * 90.00572 * 25 23 21 27 27 H 1.48498 * 109.47263 * 210.00397 * 25 23 21 28 28 H 1.48498 * 109.47134 * 330.00733 * 25 23 21 29 29 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 30 30 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 31 31 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 32 32 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 33 33 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 34 34 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 35 35 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 36 36 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 37 37 H 1.08003 * 125.79943 * 359.93879 * 10 9 7 38 38 H 1.07999 * 125.57162 * 179.97438 * 13 11 10 39 39 H 1.09003 * 109.47359 * 270.14742 * 15 14 13 40 40 H 1.09006 * 109.46933 * 30.14926 * 15 14 13 41 41 H 1.09006 * 109.47371 * 150.14572 * 15 14 13 42 42 H 1.00897 * 110.99887 * 64.87330 * 16 3 2 43 43 H 1.09003 * 109.46892 * 65.67283 * 17 16 3 44 44 H 1.09004 * 109.47007 * 305.68019 * 17 16 3 45 45 H 0.97007 * 119.99235 * 0.02562 * 20 18 17 46 46 H 0.97002 * 119.99685 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1640 2.1461 0.2830 9 6 5.8868 4.4424 -0.0160 10 6 5.1435 5.5729 -0.2161 11 7 5.9792 6.6275 -0.2672 12 1 5.7029 7.5477 -0.4006 13 6 7.2702 6.2167 -0.1046 14 6 7.2842 4.8821 0.0603 15 6 8.4947 4.0112 0.2777 16 7 1.6596 2.0963 -1.2593 17 6 2.2180 1.3802 -2.4140 18 6 1.9261 2.1536 -3.6739 19 8 1.3135 3.1989 -3.6157 20 7 2.3508 1.6871 -4.8648 21 6 2.0848 2.3904 -6.0111 22 1 1.5351 3.3186 -5.9598 23 6 2.5232 1.9096 -7.2389 24 7 3.1925 0.7804 -7.3012 25 14 2.1613 2.8683 -8.8006 26 1 3.2664 3.8255 -9.0611 27 1 2.0423 1.9270 -9.9430 28 1 0.8877 3.6146 -8.6394 29 1 -0.3633 0.4961 0.8999 30 1 -0.3632 0.5314 -0.8797 31 1 -0.3633 -1.0274 -0.0205 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1087 35 1 3.9997 0.8294 -0.6518 36 1 3.4419 3.5480 -0.1267 37 1 4.0689 5.6129 -0.3166 38 1 8.1385 6.8589 -0.1045 39 1 8.8810 3.6788 -0.6859 40 1 9.2631 4.5811 0.8002 41 1 8.2156 3.1439 0.8761 42 1 0.6569 2.1788 -1.3353 43 1 1.7652 0.3910 -2.4816 44 1 3.2964 1.2785 -2.2916 45 1 2.8442 0.8531 -4.9109 46 1 3.4982 0.4446 -8.1584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698624267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:40 Heat of formation + Delta-G solvation = -63.226542 kcal Electronic energy + Delta-G solvation = -27351.833135 eV Core-core repulsion = 23468.582495 eV Total energy + Delta-G solvation = -3883.250640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.03845 -40.56823 -39.87544 -38.50788 -35.93991 -35.03766 -33.30230 -33.29705 -32.76633 -31.25023 -29.32607 -28.00302 -27.41075 -26.06862 -24.72584 -23.12540 -21.72768 -20.83557 -20.66867 -20.03646 -19.74047 -19.12501 -18.29676 -17.30017 -17.01235 -16.60111 -16.46587 -16.15107 -15.86175 -15.72392 -15.24544 -15.01059 -14.90687 -14.74281 -14.47957 -14.19143 -14.02727 -13.92650 -13.56720 -13.52261 -13.46980 -13.24843 -13.14020 -12.89113 -12.69963 -12.40872 -12.32095 -12.23393 -12.12385 -11.80318 -11.65702 -11.48562 -10.83552 -10.32481 -10.01089 -10.00098 -9.47043 -9.31596 -9.14527 -8.45563 -5.94414 0.84189 1.37828 1.40932 1.53041 1.54002 2.07223 2.27908 2.32995 2.53450 2.66142 2.97492 3.21880 3.56330 3.76609 4.02146 4.04151 4.15569 4.18881 4.30602 4.33342 4.37885 4.47849 4.48904 4.56774 4.60429 4.71653 4.82022 4.85098 4.93038 4.94505 4.96879 5.13346 5.18032 5.27617 5.35964 5.39526 5.41140 5.60770 5.87016 5.89461 6.00062 6.09669 6.44212 6.60513 6.70306 6.80583 7.13445 7.45657 7.57782 8.12263 8.72117 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008487 B = 0.003840 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3298.525165 B = 7289.562031 C = 9455.158160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.085 3.915 4 H 0.114 0.886 5 C 0.128 3.872 6 N -0.706 5.706 7 C 0.578 3.422 8 O -0.595 6.595 9 C -0.270 4.270 10 C 0.064 3.936 11 N -0.535 5.535 12 H 0.436 0.564 13 C -0.011 4.011 14 C -0.153 4.153 15 C -0.076 4.076 16 N -0.662 5.662 17 C 0.063 3.937 18 C 0.442 3.558 19 O -0.615 6.615 20 N -0.577 5.577 21 C -0.331 4.331 22 H 0.082 0.918 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.412 0.588 37 H 0.194 0.806 38 H 0.203 0.797 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.352 0.648 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.393 0.607 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 6.633 18.085 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.197 4.197 3 C -0.025 4.025 4 H 0.132 0.868 5 C 0.004 3.996 6 N -0.357 5.357 7 C 0.368 3.632 8 O -0.478 6.478 9 C -0.280 4.280 10 C -0.074 4.074 11 N -0.130 5.130 12 H 0.277 0.723 13 C -0.140 4.140 14 C -0.159 4.159 15 C -0.134 4.134 16 N -0.295 5.295 17 C -0.069 4.069 18 C 0.230 3.770 19 O -0.501 6.501 20 N -0.214 5.214 21 C -0.461 4.461 22 H 0.100 0.900 23 C -0.215 4.215 24 N -0.565 5.565 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.194 1.194 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.249 0.751 37 H 0.211 0.789 38 H 0.220 0.780 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.173 0.827 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.226 0.774 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.018 7.193 18.095 19.705 hybrid contribution -0.744 -0.535 -1.316 1.604 sum 2.274 6.658 16.779 18.194 Atomic orbital electron populations 1.21739 0.94637 1.02338 1.02013 1.22175 0.97155 0.96978 1.03349 1.21947 0.93311 0.94500 0.92706 0.86837 1.21411 0.93550 0.83337 1.01351 1.45605 1.06650 1.10328 1.73115 1.17825 0.82087 0.88005 0.75246 1.90679 1.57130 1.47210 1.52767 1.20502 0.95148 0.92242 1.20152 1.22246 0.97332 0.86039 1.01830 1.41536 1.06055 1.10125 1.55255 0.72344 1.22010 0.87982 0.94816 1.09155 1.20838 0.93364 0.94311 1.07418 1.20089 0.93906 0.98245 1.01114 1.60148 1.17886 1.51692 0.99744 1.21498 1.01264 0.95316 0.88854 1.20807 0.83318 0.87527 0.85364 1.90471 1.46156 1.26305 1.87204 1.41971 1.50412 1.23453 1.05597 1.19677 1.34917 1.06348 0.85123 0.90038 1.26063 0.96114 0.97286 1.02006 1.69691 1.37971 1.20967 1.27833 0.84926 0.78740 0.77819 0.76854 1.19828 1.19681 1.19391 0.91058 0.93942 0.91953 0.92379 0.89519 0.90519 0.93588 0.75111 0.78942 0.78040 0.92919 0.89883 0.93086 0.82716 0.91702 0.89509 0.77412 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.71 71.98 0.70 -1.85 16 2 C -0.16 -2.87 5.17 30.60 0.16 -2.72 16 3 C 0.09 1.76 2.70 44.91 0.12 1.88 16 4 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 5 C 0.13 3.21 4.70 86.38 0.41 3.61 16 6 N -0.71 -19.30 5.38 -466.53 -2.51 -21.80 16 7 C 0.58 19.16 7.81 86.62 0.68 19.83 16 8 O -0.60 -23.79 15.32 -4.12 -0.06 -23.85 16 9 C -0.27 -7.78 6.29 -19.04 -0.12 -7.90 16 10 C 0.06 1.35 11.40 83.92 0.96 2.30 16 11 N -0.53 -8.38 5.90 -194.56 -1.15 -9.53 16 12 H 0.44 3.43 8.96 -92.71 -0.83 2.60 16 13 C -0.01 -0.21 11.82 83.12 0.98 0.77 16 14 C -0.15 -4.04 6.35 -18.52 -0.12 -4.15 16 15 C -0.08 -1.95 9.97 71.23 0.71 -1.24 16 16 N -0.66 -18.34 5.36 -495.58 -2.65 -20.99 16 17 C 0.06 2.16 5.34 85.55 0.46 2.62 16 18 C 0.44 20.87 7.83 87.65 0.69 21.56 16 19 O -0.62 -32.77 15.90 -3.08 -0.05 -32.82 16 20 N -0.58 -30.13 5.29 -306.99 -1.62 -31.76 16 21 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 22 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 24 N -0.92 -51.11 13.05 21.66 0.28 -50.83 16 25 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.85 6.85 -2.38 -0.02 0.83 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.24 6.23 -2.39 -0.01 1.22 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.36 6.57 -2.38 -0.02 1.35 16 36 H 0.41 10.10 7.08 -92.70 -0.66 9.44 16 37 H 0.19 3.13 7.45 -2.91 -0.02 3.11 16 38 H 0.20 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.05 1.55 6.86 -2.38 -0.02 1.54 16 42 H 0.35 9.88 7.23 -89.70 -0.65 9.23 16 43 H 0.07 2.02 6.49 -2.39 -0.02 2.00 16 44 H 0.09 3.06 6.15 -2.38 -0.01 3.04 16 45 H 0.39 19.99 7.90 -92.70 -0.73 19.25 16 46 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -77.76 379.64 -0.65 -78.41 By element: Atomic # 1 Polarization: 53.39 SS G_CDS: -1.81 Total: 51.58 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 6.90 Total: 16.24 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -7.65 Total: -134.91 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: -0.11 Total: -56.67 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -77.76 -0.65 -78.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698624267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.187 kcal (2) G-P(sol) polarization free energy of solvation -77.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds