Wall clock time and date at job start Tue Mar 31 2020 13:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47160 * 2 1 4 4 N 1.46503 * 109.47038 * 181.09396 * 3 2 1 5 5 C 1.34776 * 120.00284 * 88.76464 * 4 3 2 6 6 O 1.21735 * 120.00104 * 175.31796 * 5 4 3 7 7 C 1.46381 * 119.99573 * 355.32382 * 5 4 3 8 8 C 1.36708 * 126.83023 * 351.71545 * 7 5 4 9 9 N 1.33227 * 107.96449 * 179.97438 * 8 7 5 10 10 C 1.31534 * 109.76154 * 359.97438 * 9 8 7 11 11 O 1.35206 * 125.49176 * 180.02562 * 10 9 8 12 12 N 1.34949 * 109.01509 * 0.02562 * 10 9 8 13 13 C 1.46498 * 126.54308 * 179.73356 * 12 10 9 14 14 C 1.46500 * 119.99972 * 268.76524 * 4 3 2 15 15 H 1.09008 * 110.63829 * 358.31276 * 14 4 3 16 16 C 1.55155 * 110.72204 * 234.97881 * 14 4 3 17 17 C 1.55128 * 101.48526 * 205.96629 * 16 14 4 18 18 N 1.47421 * 104.72097 * 37.29334 * 17 16 14 19 19 C 1.36943 * 125.64425 * 155.81226 * 18 17 16 20 20 H 1.08007 * 119.99772 * 179.69196 * 19 18 17 21 21 C 1.38811 * 120.00177 * 359.69594 * 19 18 17 22 22 N 1.31619 * 120.00071 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99780 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47224 * 239.99864 * 23 21 19 25 25 H 1.48509 * 109.46869 * 120.00133 * 23 21 19 26 26 H 1.48499 * 109.47558 * 0.02562 * 23 21 19 27 27 C 1.47017 * 108.70693 * 335.55415 * 18 17 16 28 28 H 1.09001 * 109.47117 * 64.88345 * 1 2 3 29 29 H 1.09000 * 109.47483 * 304.88651 * 1 2 3 30 30 H 1.08999 * 109.47142 * 184.88441 * 1 2 3 31 31 H 1.09003 * 109.47422 * 119.99616 * 2 1 3 32 32 H 1.09001 * 109.47257 * 239.99556 * 2 1 3 33 33 H 1.08999 * 109.47101 * 61.08929 * 3 2 1 34 34 H 1.09000 * 109.46819 * 301.08870 * 3 2 1 35 35 H 1.08006 * 126.02168 * 0.02562 * 8 7 5 36 36 H 0.96696 * 113.99877 * 269.97652 * 11 10 9 37 37 H 1.08996 * 109.46924 * 216.26632 * 13 12 10 38 38 H 1.09000 * 109.46686 * 96.27468 * 13 12 10 39 39 H 1.08999 * 109.47018 * 336.27369 * 13 12 10 40 40 H 1.09003 * 111.00002 * 324.20935 * 16 14 4 41 41 H 1.09001 * 111.00699 * 88.01821 * 16 14 4 42 42 H 1.08997 * 110.58876 * 278.40334 * 17 16 14 43 43 H 1.09003 * 110.33962 * 156.05802 * 17 16 14 44 44 H 0.96991 * 119.99873 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.88607 * 120.70408 * 27 18 17 46 46 H 1.09001 * 109.88363 * 241.86795 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5048 1.4426 -0.0264 5 6 4.1576 1.4249 -1.2053 6 8 5.3716 1.5109 -1.2302 7 6 3.4067 1.3023 -2.4559 8 6 2.0713 1.0407 -2.5877 9 7 1.7847 1.0116 -3.8884 10 6 2.8737 1.2427 -4.5890 11 8 2.9444 1.2861 -5.9385 12 7 3.9090 1.4295 -3.7438 13 6 5.2987 1.7074 -4.1147 14 6 4.2600 1.4619 1.2288 15 1 3.5843 1.5047 2.0832 16 6 5.2562 2.6511 1.2519 17 6 6.3431 2.1247 2.2256 18 7 6.4524 0.6861 1.9228 19 6 7.5488 -0.0987 2.1620 20 1 7.5276 -1.1481 1.9073 21 6 8.6872 0.4543 2.7320 22 7 8.7132 1.7332 3.0420 23 14 10.1825 -0.6165 3.0589 24 1 10.4910 -0.6057 4.5115 25 1 11.3454 -0.0873 2.3019 26 1 9.9001 -2.0076 2.6227 27 6 5.1872 0.2322 1.3271 28 1 -0.3633 0.4362 -0.9305 29 1 -0.3634 0.5878 0.8430 30 1 -0.3633 -1.0239 0.0875 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.6927 1.9507 0.8996 34 1 1.6608 1.9619 -0.8801 35 1 1.3717 0.8858 -1.7796 36 1 3.1370 0.4325 -6.3499 37 1 5.9684 1.2061 -3.4160 38 1 5.4759 2.7824 -4.0799 39 1 5.4856 1.3408 -5.1240 40 1 5.6704 2.8331 0.2601 41 1 4.7825 3.5502 1.6461 42 1 6.0344 2.2722 3.2605 43 1 7.2934 2.6250 2.0390 44 1 9.5085 2.1196 3.4406 45 1 5.3705 -0.1743 0.3325 46 1 4.7301 -0.5270 1.9617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753318458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:36 Heat of formation + Delta-G solvation = 57.727883 kcal Electronic energy + Delta-G solvation = -28885.406910 eV Core-core repulsion = 25007.401247 eV Total energy + Delta-G solvation = -3878.005663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.48567 -39.92223 -37.63323 -36.81693 -36.34461 -34.07097 -33.18668 -31.86079 -29.83873 -28.81873 -27.39197 -27.03709 -26.16085 -24.53760 -22.86835 -22.16376 -21.73109 -20.65076 -20.08723 -19.03845 -18.51815 -17.22461 -17.04442 -16.78039 -16.31597 -15.25839 -15.20031 -15.00015 -14.59385 -14.40945 -14.23913 -13.86100 -13.39786 -13.29368 -13.21929 -12.90195 -12.73539 -12.43796 -12.30001 -12.12045 -12.01247 -11.72461 -11.46775 -11.36830 -10.98099 -10.91580 -10.83546 -10.76408 -10.55516 -10.27251 -10.03792 -9.91022 -9.78944 -9.52164 -9.20758 -8.62787 -8.53804 -8.34851 -6.72991 -5.57013 -2.97726 1.12560 2.04538 2.50547 3.12435 3.35859 3.43860 3.49076 3.51681 3.61580 4.37623 4.55936 4.62300 4.72091 4.78330 4.84680 5.09621 5.11440 5.15367 5.25097 5.41039 5.42130 5.48279 5.49532 5.59175 5.64017 5.79141 5.82923 5.85711 5.89102 5.93309 6.12844 6.24987 6.26185 6.34769 6.55643 6.59546 6.66511 6.78815 7.17557 7.28212 7.49034 7.61773 7.64179 7.71365 7.94469 8.34027 8.45944 9.30160 9.91316 10.56207 11.46731 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.003864 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.215806 B = 7245.032957 C = 8347.961393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.160 4.160 3 C 0.085 3.915 4 N -0.589 5.589 5 C 0.585 3.415 6 O -0.510 6.510 7 C -0.067 4.067 8 C 0.014 3.986 9 N -0.489 5.489 10 C 0.386 3.614 11 O -0.441 6.441 12 N -0.426 5.426 13 C 0.067 3.933 14 C 0.138 3.862 15 H 0.093 0.907 16 C -0.159 4.159 17 C 0.157 3.843 18 N -0.596 5.596 19 C -0.214 4.214 20 H 0.075 0.925 21 C -0.013 4.013 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.135 3.865 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.213 0.787 36 H 0.402 0.598 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.010 0.990 43 H 0.107 0.893 44 H 0.250 0.750 45 H 0.032 0.968 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.158 -0.307 -12.316 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.199 4.199 3 C -0.038 4.038 4 N -0.321 5.321 5 C 0.372 3.628 6 O -0.386 6.386 7 C -0.183 4.183 8 C -0.139 4.139 9 N -0.218 5.218 10 C 0.087 3.913 11 O -0.242 6.242 12 N -0.119 5.119 13 C -0.075 4.075 14 C 0.035 3.965 15 H 0.111 0.889 16 C -0.198 4.198 17 C 0.032 3.968 18 N -0.322 5.322 19 C -0.343 4.343 20 H 0.093 0.907 21 C -0.208 4.208 22 N -0.572 5.572 23 Si 0.744 3.256 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.008 3.992 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.229 0.771 36 H 0.259 0.741 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.125 0.875 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -15.963 0.242 -12.701 20.400 hybrid contribution 1.615 -0.919 0.252 1.875 sum -14.348 -0.677 -12.449 19.008 Atomic orbital electron populations 1.21773 0.94786 1.02464 1.02156 1.22228 0.96368 0.97285 1.03987 1.22310 0.79989 0.97237 1.04270 1.47598 1.06142 1.72946 1.05386 1.16622 0.86550 0.77848 0.81798 1.90910 1.12742 1.48350 1.86562 1.20844 0.95419 1.16722 0.85359 1.24010 0.93499 1.02402 0.93982 1.70348 1.25236 1.21779 1.04414 1.20277 0.83204 1.04233 0.83629 1.84818 1.91972 1.36781 1.10580 1.45648 1.09908 1.50636 1.05663 1.22282 0.78647 1.03820 1.02721 1.22283 0.92929 0.98380 0.82891 0.88914 1.23543 0.97673 0.95252 1.03349 1.21900 0.97760 0.84598 0.92515 1.44307 1.10022 1.06197 1.71689 1.19096 0.90188 0.91691 1.33286 0.90679 1.24750 0.98154 0.96294 1.01573 1.69800 1.28114 1.10455 1.48821 0.86019 0.82959 0.79205 0.77454 1.21831 1.21843 1.20640 1.21461 0.87586 0.93323 0.96800 0.92259 0.92169 0.92090 0.90480 0.90730 0.89592 0.88890 0.77103 0.74065 0.87266 0.89922 0.89595 0.89500 0.92893 0.97222 0.87498 0.93921 0.94994 0.96448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.74 37.15 0.36 -0.72 16 2 C -0.16 -1.49 5.24 -26.73 -0.14 -1.63 16 3 C 0.09 0.88 4.88 -4.04 -0.02 0.86 16 4 N -0.59 -8.69 2.54 -165.65 -0.42 -9.11 16 5 C 0.58 9.73 6.70 -12.98 -0.09 9.64 16 6 O -0.51 -10.39 11.40 5.16 0.06 -10.33 16 7 C -0.07 -0.96 6.75 -81.98 -0.55 -1.51 16 8 C 0.01 0.18 8.48 -17.50 -0.15 0.03 16 9 N -0.49 -6.62 11.22 -14.62 -0.16 -6.78 16 10 C 0.39 4.82 9.00 -89.59 -0.81 4.02 16 11 O -0.44 -4.15 13.43 -17.31 -0.23 -4.39 16 12 N -0.43 -5.60 3.20 -122.12 -0.39 -5.99 16 13 C 0.07 0.75 10.60 59.85 0.63 1.38 16 14 C 0.14 2.43 3.44 -66.10 -0.23 2.20 16 15 H 0.09 1.43 7.84 -51.92 -0.41 1.02 16 16 C -0.16 -3.21 6.41 -24.46 -0.16 -3.37 16 17 C 0.16 3.96 5.91 -2.41 -0.01 3.95 16 18 N -0.60 -15.86 3.39 -169.94 -0.58 -16.44 16 19 C -0.21 -6.19 10.27 -15.06 -0.15 -6.34 16 20 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 21 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 22 N -0.92 -27.56 10.08 55.49 0.56 -27.00 16 23 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 C 0.14 2.96 6.51 -3.07 -0.02 2.94 16 28 H 0.06 0.39 7.26 -51.93 -0.38 0.01 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.77 6.31 -51.93 -0.33 0.45 16 33 H 0.09 0.75 7.91 -51.93 -0.41 0.34 16 34 H 0.09 0.90 4.81 -51.93 -0.25 0.65 16 35 H 0.21 2.17 2.06 -52.48 -0.11 2.06 16 36 H 0.40 1.65 9.06 45.56 0.41 2.06 16 37 H 0.11 1.45 6.71 -51.93 -0.35 1.11 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.67 8.01 -51.93 -0.42 0.26 16 40 H 0.09 1.92 5.64 -51.93 -0.29 1.63 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.11 3.06 5.86 -51.93 -0.30 2.76 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.03 0.75 6.42 -51.93 -0.33 0.42 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -35.79 356.60 -7.91 -43.70 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.67 Total: 2.34 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -1.43 Total: 10.98 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -0.99 Total: -65.32 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.17 Total: -14.72 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.79 -7.91 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753318458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.431 kcal (2) G-P(sol) polarization free energy of solvation -35.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds