Wall clock time and date at job start Tue Mar 31 2020 13:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47160 * 2 1 4 4 N 1.46503 * 109.47038 * 181.09396 * 3 2 1 5 5 C 1.34776 * 120.00284 * 88.76464 * 4 3 2 6 6 O 1.21735 * 120.00104 * 175.31796 * 5 4 3 7 7 C 1.46381 * 119.99573 * 355.32382 * 5 4 3 8 8 C 1.36708 * 126.83023 * 351.71545 * 7 5 4 9 9 N 1.33227 * 107.96449 * 179.97438 * 8 7 5 10 10 C 1.31534 * 109.76154 * 359.97438 * 9 8 7 11 11 O 1.35206 * 125.49176 * 180.02562 * 10 9 8 12 12 N 1.34949 * 109.01509 * 0.02562 * 10 9 8 13 13 C 1.46498 * 126.54308 * 179.73356 * 12 10 9 14 14 C 1.46500 * 119.99972 * 268.76524 * 4 3 2 15 15 H 1.09008 * 110.63829 * 358.31276 * 14 4 3 16 16 C 1.55155 * 110.72204 * 234.97881 * 14 4 3 17 17 C 1.55128 * 101.48526 * 205.96629 * 16 14 4 18 18 N 1.47421 * 104.72097 * 37.29334 * 17 16 14 19 19 C 1.36943 * 125.64425 * 155.81226 * 18 17 16 20 20 H 1.08007 * 119.99772 * 179.69196 * 19 18 17 21 21 C 1.38811 * 120.00177 * 359.69594 * 19 18 17 22 22 N 1.31619 * 120.00071 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99780 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47224 * 239.99864 * 23 21 19 25 25 H 1.48509 * 109.46869 * 120.00133 * 23 21 19 26 26 H 1.48499 * 109.47558 * 0.02562 * 23 21 19 27 27 C 1.47017 * 108.70693 * 335.55415 * 18 17 16 28 28 H 1.09001 * 109.47117 * 64.88345 * 1 2 3 29 29 H 1.09000 * 109.47483 * 304.88651 * 1 2 3 30 30 H 1.08999 * 109.47142 * 184.88441 * 1 2 3 31 31 H 1.09003 * 109.47422 * 119.99616 * 2 1 3 32 32 H 1.09001 * 109.47257 * 239.99556 * 2 1 3 33 33 H 1.08999 * 109.47101 * 61.08929 * 3 2 1 34 34 H 1.09000 * 109.46819 * 301.08870 * 3 2 1 35 35 H 1.08006 * 126.02168 * 0.02562 * 8 7 5 36 36 H 0.96696 * 113.99877 * 269.97652 * 11 10 9 37 37 H 1.08996 * 109.46924 * 216.26632 * 13 12 10 38 38 H 1.09000 * 109.46686 * 96.27468 * 13 12 10 39 39 H 1.08999 * 109.47018 * 336.27369 * 13 12 10 40 40 H 1.09003 * 111.00002 * 324.20935 * 16 14 4 41 41 H 1.09001 * 111.00699 * 88.01821 * 16 14 4 42 42 H 1.08997 * 110.58876 * 278.40334 * 17 16 14 43 43 H 1.09003 * 110.33962 * 156.05802 * 17 16 14 44 44 H 0.96991 * 119.99873 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.88607 * 120.70408 * 27 18 17 46 46 H 1.09001 * 109.88363 * 241.86795 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5048 1.4426 -0.0264 5 6 4.1576 1.4249 -1.2053 6 8 5.3716 1.5109 -1.2302 7 6 3.4067 1.3023 -2.4559 8 6 2.0713 1.0407 -2.5877 9 7 1.7847 1.0116 -3.8884 10 6 2.8737 1.2427 -4.5890 11 8 2.9444 1.2861 -5.9385 12 7 3.9090 1.4295 -3.7438 13 6 5.2987 1.7074 -4.1147 14 6 4.2600 1.4619 1.2288 15 1 3.5843 1.5047 2.0832 16 6 5.2562 2.6511 1.2519 17 6 6.3431 2.1247 2.2256 18 7 6.4524 0.6861 1.9228 19 6 7.5488 -0.0987 2.1620 20 1 7.5276 -1.1481 1.9073 21 6 8.6872 0.4543 2.7320 22 7 8.7132 1.7332 3.0420 23 14 10.1825 -0.6165 3.0589 24 1 10.4910 -0.6057 4.5115 25 1 11.3454 -0.0873 2.3019 26 1 9.9001 -2.0076 2.6227 27 6 5.1872 0.2322 1.3271 28 1 -0.3633 0.4362 -0.9305 29 1 -0.3634 0.5878 0.8430 30 1 -0.3633 -1.0239 0.0875 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.6927 1.9507 0.8996 34 1 1.6608 1.9619 -0.8801 35 1 1.3717 0.8858 -1.7796 36 1 3.1370 0.4325 -6.3499 37 1 5.9684 1.2061 -3.4160 38 1 5.4759 2.7824 -4.0799 39 1 5.4856 1.3408 -5.1240 40 1 5.6704 2.8331 0.2601 41 1 4.7825 3.5502 1.6461 42 1 6.0344 2.2722 3.2605 43 1 7.2934 2.6250 2.0390 44 1 9.5085 2.1196 3.4406 45 1 5.3705 -0.1743 0.3325 46 1 4.7301 -0.5270 1.9617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753318458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:35 Heat of formation + Delta-G solvation = 30.079200 kcal Electronic energy + Delta-G solvation = -28886.605847 eV Core-core repulsion = 25007.401247 eV Total energy + Delta-G solvation = -3879.204600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.48179 -41.19556 -38.63431 -38.22634 -37.55861 -35.06361 -34.71258 -33.36703 -31.35077 -30.40359 -28.78871 -28.13448 -27.11259 -26.45282 -24.06943 -23.18991 -22.52626 -22.09497 -21.86788 -20.18675 -19.49536 -18.93848 -18.24321 -17.93388 -17.42259 -16.83000 -16.41116 -16.23377 -16.13719 -15.82008 -15.39424 -15.22038 -14.83348 -14.44361 -14.12339 -14.01014 -13.80465 -13.62981 -13.57330 -13.40434 -13.22177 -13.07457 -12.88562 -12.77934 -12.58522 -12.48014 -12.19205 -11.99360 -11.97279 -11.83040 -11.65465 -11.39980 -11.31221 -10.90154 -10.75312 -10.60497 -9.72121 -9.51401 -8.85418 -7.76018 -5.19855 0.09607 1.07804 1.43753 1.45736 1.52157 1.55733 1.98837 2.19301 2.49973 2.77642 3.30657 3.35973 3.75412 3.76562 3.85895 3.86865 3.94263 4.05332 4.16435 4.21513 4.22956 4.27970 4.40743 4.55740 4.58581 4.67243 4.73876 4.76707 4.87683 4.94502 5.02152 5.04108 5.09919 5.21364 5.29214 5.34620 5.43868 5.51315 5.57460 5.64110 5.76228 5.81770 6.32003 6.35553 6.52694 6.65121 7.11478 7.12537 7.79506 8.43235 9.25574 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.003864 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.215806 B = 7245.032957 C = 8347.961393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C 0.080 3.920 4 N -0.583 5.583 5 C 0.581 3.419 6 O -0.559 6.559 7 C -0.097 4.097 8 C 0.036 3.964 9 N -0.509 5.509 10 C 0.400 3.600 11 O -0.440 6.440 12 N -0.433 5.433 13 C 0.069 3.931 14 C 0.156 3.844 15 H 0.128 0.872 16 C -0.145 4.145 17 C 0.161 3.839 18 N -0.618 5.618 19 C -0.235 4.235 20 H 0.074 0.926 21 C -0.067 4.067 22 N -0.948 5.948 23 Si 0.980 3.020 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.269 1.269 27 C 0.135 3.865 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.234 0.766 36 H 0.428 0.572 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.065 0.935 41 H 0.083 0.917 42 H -0.003 1.003 43 H 0.066 0.934 44 H 0.246 0.754 45 H 0.012 0.988 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.669 -0.738 -13.140 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C -0.041 4.041 4 N -0.314 5.314 5 C 0.370 3.630 6 O -0.439 6.439 7 C -0.213 4.213 8 C -0.117 4.117 9 N -0.239 5.239 10 C 0.100 3.900 11 O -0.244 6.244 12 N -0.126 5.126 13 C -0.073 4.073 14 C 0.053 3.947 15 H 0.146 0.854 16 C -0.184 4.184 17 C 0.036 3.964 18 N -0.344 5.344 19 C -0.364 4.364 20 H 0.091 0.909 21 C -0.259 4.259 22 N -0.598 5.598 23 Si 0.808 3.192 24 H -0.214 1.214 25 H -0.220 1.220 26 H -0.194 1.194 27 C 0.008 3.992 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.249 0.751 36 H 0.289 0.711 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.139 0.861 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.015 0.985 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.030 0.970 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -18.532 -0.217 -13.553 22.961 hybrid contribution 2.356 -0.810 0.385 2.521 sum -16.176 -1.027 -13.168 20.884 Atomic orbital electron populations 1.21750 0.92615 1.03127 1.03193 1.22167 0.98085 0.96172 1.02995 1.22647 0.76908 0.98403 1.06153 1.47585 1.07857 1.72135 1.03815 1.16992 0.86130 0.76883 0.82966 1.90892 1.14919 1.50755 1.87344 1.20613 0.96000 1.19607 0.85098 1.24344 0.92899 1.00153 0.94321 1.70413 1.25696 1.23042 1.04711 1.20437 0.82780 1.02187 0.84574 1.84782 1.91865 1.38914 1.08842 1.45783 1.10547 1.50746 1.05495 1.22310 0.77553 1.03620 1.03791 1.22027 0.92706 0.94584 0.85411 0.85447 1.23303 0.96957 0.97352 1.00785 1.21649 0.97572 0.84142 0.93051 1.44591 1.11185 1.06795 1.71852 1.19427 0.91555 0.92106 1.33343 0.90851 1.25602 1.00897 0.97661 1.01743 1.70065 1.28511 1.11900 1.49335 0.84992 0.79031 0.78040 0.77155 1.21370 1.21983 1.19380 1.21573 0.86827 0.95500 0.95262 0.91481 0.90798 0.91758 0.91264 0.92074 0.86923 0.87803 0.75094 0.71070 0.90018 0.89987 0.86107 0.91671 0.89801 0.98461 0.91585 0.94389 0.97036 0.95550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.74 71.98 0.70 -0.88 16 2 C -0.16 -2.49 5.24 30.59 0.16 -2.33 16 3 C 0.08 1.41 4.88 86.38 0.42 1.83 16 4 N -0.58 -16.46 2.54 -796.21 -2.02 -18.48 16 5 C 0.58 19.43 6.70 86.36 0.58 20.00 16 6 O -0.56 -23.83 11.40 -4.46 -0.05 -23.88 16 7 C -0.10 -2.73 6.75 39.80 0.27 -2.46 16 8 C 0.04 0.84 8.48 84.12 0.71 1.56 16 9 N -0.51 -12.64 11.22 -313.65 -3.52 -16.16 16 10 C 0.40 9.18 9.00 179.99 1.62 10.80 16 11 O -0.44 -7.06 13.43 -84.87 -1.14 -8.20 16 12 N -0.43 -11.01 3.20 -652.00 -2.09 -13.10 16 13 C 0.07 1.52 10.60 127.77 1.35 2.88 16 14 C 0.16 5.34 3.44 46.18 0.16 5.50 16 15 H 0.13 3.52 7.84 -2.38 -0.02 3.50 16 16 C -0.14 -5.86 6.41 32.06 0.21 -5.66 16 17 C 0.16 8.38 5.91 86.93 0.51 8.89 16 18 N -0.62 -33.91 3.39 -691.56 -2.35 -36.25 16 19 C -0.24 -14.00 10.27 84.03 0.86 -13.14 16 20 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 22 N -0.95 -58.67 10.08 21.65 0.22 -58.46 16 23 Si 0.98 47.58 29.55 68.60 2.03 49.61 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 27 C 0.13 5.96 6.51 86.73 0.56 6.52 16 28 H 0.07 0.63 7.26 -2.39 -0.02 0.61 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.16 6.31 -2.39 -0.02 1.14 16 33 H 0.11 1.46 7.91 -2.39 -0.02 1.44 16 34 H 0.10 1.67 4.81 -2.39 -0.01 1.66 16 35 H 0.23 4.11 2.06 -2.91 -0.01 4.11 16 36 H 0.43 2.16 9.06 -74.06 -0.67 1.49 16 37 H 0.08 2.31 6.71 -2.39 -0.02 2.29 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.12 1.72 8.01 -2.39 -0.02 1.70 16 40 H 0.06 2.97 5.64 -2.39 -0.01 2.96 16 41 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.07 3.99 5.86 -2.39 -0.01 3.97 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.93 16 45 H 0.01 0.56 6.42 -2.39 -0.02 0.55 16 46 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -81.47 356.60 0.02 -81.45 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.36 Total: 13.45 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 8.59 Total: 30.03 kcal Atomic # 7 Polarization: -132.69 SS G_CDS: -9.76 Total: -142.45 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.19 Total: -32.08 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -81.47 0.02 -81.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753318458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.528 kcal (2) G-P(sol) polarization free energy of solvation -81.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds