Wall clock time and date at job start Tue Mar 31 2020 13:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47138 * 2 1 4 4 N 1.46499 * 109.46721 * 177.39415 * 3 2 1 5 5 C 1.34777 * 120.00113 * 234.62441 * 4 3 2 6 6 O 1.21728 * 120.00410 * 173.53323 * 5 4 3 7 7 C 1.46385 * 119.99639 * 353.53283 * 5 4 3 8 8 C 1.36718 * 126.82498 * 229.37894 * 7 5 4 9 9 N 1.33225 * 107.96423 * 179.97438 * 8 7 5 10 10 C 1.31546 * 109.75927 * 0.02562 * 9 8 7 11 11 O 1.35202 * 125.49087 * 180.02562 * 10 9 8 12 12 N 1.34953 * 109.01222 * 359.76044 * 10 9 8 13 13 C 1.46493 * 126.53964 * 180.26833 * 12 10 9 14 14 C 1.46504 * 120.00433 * 54.62453 * 4 3 2 15 15 H 1.09009 * 110.63807 * 340.27609 * 14 4 3 16 16 C 1.55156 * 110.86970 * 103.51848 * 14 4 3 17 17 C 1.54908 * 101.58108 * 82.93843 * 16 14 4 18 18 N 1.47426 * 104.83332 * 37.00504 * 17 16 14 19 19 C 1.36938 * 125.64874 * 156.13627 * 18 17 16 20 20 H 1.08003 * 119.99488 * 126.87350 * 19 18 17 21 21 C 1.38806 * 120.00126 * 306.87779 * 19 18 17 22 22 N 1.31621 * 120.00175 * 183.88864 * 21 19 18 23 23 Si 1.86795 * 119.99941 * 3.89361 * 21 19 18 24 24 H 1.48508 * 109.47297 * 94.36588 * 23 21 19 25 25 H 1.48505 * 109.47055 * 214.35764 * 23 21 19 26 26 H 1.48498 * 109.47554 * 334.36132 * 23 21 19 27 27 C 1.47023 * 108.70219 * 335.87389 * 18 17 16 28 28 H 1.09001 * 109.46828 * 65.19523 * 1 2 3 29 29 H 1.08997 * 109.47141 * 185.20070 * 1 2 3 30 30 H 1.09002 * 109.46892 * 305.20214 * 1 2 3 31 31 H 1.09001 * 109.46920 * 239.99746 * 2 1 3 32 32 H 1.08999 * 109.46836 * 120.00521 * 2 1 3 33 33 H 1.08995 * 109.46734 * 57.39621 * 3 2 1 34 34 H 1.08993 * 109.47170 * 297.38984 * 3 2 1 35 35 H 1.07999 * 126.01862 * 359.97438 * 8 7 5 36 36 H 0.96703 * 113.99635 * 90.01899 * 11 10 9 37 37 H 1.09001 * 109.47107 * 192.09322 * 13 12 10 38 38 H 1.08997 * 109.47398 * 312.09434 * 13 12 10 39 39 H 1.09005 * 109.47334 * 72.09383 * 13 12 10 40 40 H 1.09000 * 111.00154 * 201.00657 * 16 14 4 41 41 H 1.08991 * 111.00712 * 324.86055 * 16 14 4 42 42 H 1.09004 * 110.36383 * 278.16710 * 17 16 14 43 43 H 1.08998 * 110.37324 * 155.84465 * 17 16 14 44 44 H 0.96999 * 120.00311 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.88065 * 120.47943 * 27 18 17 46 46 H 1.09002 * 109.88315 * 241.63894 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5037 1.4429 0.0628 5 6 4.1365 2.1331 1.0322 6 8 5.3437 2.0397 1.1570 7 6 3.3719 2.9952 1.9349 8 6 3.6482 4.2950 2.2566 9 7 2.7122 4.7160 3.1060 10 6 1.8549 3.7460 3.3396 11 8 0.7790 3.8286 4.1542 12 7 2.2193 2.6570 2.6307 13 6 1.5309 1.3642 2.6025 14 6 4.2797 0.6930 -0.9281 15 1 3.6604 -0.0655 -1.4071 16 6 4.8952 1.6472 -1.9854 17 6 6.1737 2.1337 -1.2584 18 7 6.6569 0.9555 -0.5155 19 6 7.9473 0.7417 -0.1102 20 1 8.1578 0.5162 0.9249 21 6 8.9847 0.8148 -1.0295 22 7 10.2155 0.5343 -0.6567 23 14 8.6341 1.3113 -2.7958 24 1 8.8483 2.7727 -2.9511 25 1 9.5488 0.5776 -3.7071 26 1 7.2269 0.9786 -3.1336 27 6 5.5226 0.0512 -0.2763 28 1 -0.3633 0.4311 -0.9329 29 1 -0.3633 -1.0234 0.0931 30 1 -0.3633 0.5924 0.8398 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6391 1.9696 0.8657 34 1 1.7155 1.9426 -0.9124 35 1 4.4791 4.8777 1.8872 36 1 -0.0279 4.1250 3.7111 37 1 2.1678 0.6240 2.1183 38 1 1.3140 1.0457 3.6221 39 1 0.5986 1.4610 2.0460 40 1 5.1465 1.1081 -2.8989 41 1 4.2251 2.4803 -2.1970 42 1 5.9335 2.9440 -0.5700 43 1 6.9213 2.4586 -1.9820 44 1 10.9405 0.5858 -1.2990 45 1 5.7202 -0.9195 -0.7311 46 1 5.3609 -0.0652 0.7953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753318459.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:39 Heat of formation + Delta-G solvation = 80.667934 kcal Electronic energy + Delta-G solvation = -29646.373420 eV Core-core repulsion = 25769.362512 eV Total energy + Delta-G solvation = -3877.010907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.53654 -40.11004 -37.63675 -36.84637 -36.48109 -34.15740 -33.08810 -31.99535 -29.80269 -29.09322 -28.03057 -27.38313 -26.16575 -24.38047 -23.18003 -22.08465 -21.75447 -20.58541 -20.27788 -18.88180 -18.63337 -17.53056 -16.97729 -16.83244 -16.46513 -15.62691 -15.35579 -15.15554 -14.98434 -14.34926 -14.27158 -13.74469 -13.57311 -13.49728 -13.29125 -13.08321 -13.01922 -12.72233 -12.45641 -12.24253 -12.18559 -12.09570 -11.61865 -11.39102 -11.25071 -11.04184 -10.91648 -10.78975 -10.53715 -10.35044 -10.21495 -9.94550 -9.78542 -9.39743 -9.29093 -8.49868 -8.42190 -8.31668 -6.23665 -5.76227 -3.43001 1.27389 2.04123 2.60346 2.93457 3.27179 3.42957 3.51522 3.57332 3.57999 4.24060 4.36094 4.48896 4.58678 4.59763 4.64839 4.85407 4.95443 5.03006 5.11623 5.15359 5.20008 5.26453 5.37280 5.42514 5.48654 5.54374 5.63243 5.64737 5.70513 5.76390 5.91364 6.01048 6.20430 6.23681 6.31832 6.35074 6.42762 6.71099 6.80978 6.99860 7.11153 7.28251 7.48500 7.71771 8.31774 8.43465 8.65934 9.08966 9.83947 10.56302 11.32939 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.004498 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.616527 B = 6223.174150 C = 7181.627978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.084 3.916 4 N -0.603 5.603 5 C 0.566 3.434 6 O -0.436 6.436 7 C -0.057 4.057 8 C 0.059 3.941 9 N -0.484 5.484 10 C 0.382 3.618 11 O -0.441 6.441 12 N -0.448 5.448 13 C 0.051 3.949 14 C 0.132 3.868 15 H 0.091 0.909 16 C -0.149 4.149 17 C 0.125 3.875 18 N -0.586 5.586 19 C -0.234 4.234 20 H 0.069 0.931 21 C 0.037 3.963 22 N -0.912 5.912 23 Si 0.899 3.101 24 H -0.290 1.290 25 H -0.306 1.306 26 H -0.260 1.260 27 C 0.145 3.855 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.187 0.813 36 H 0.400 0.600 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.261 0.739 45 H 0.030 0.970 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.700 1.250 1.235 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 C -0.040 4.040 4 N -0.339 5.339 5 C 0.349 3.651 6 O -0.304 6.304 7 C -0.171 4.171 8 C -0.093 4.093 9 N -0.213 5.213 10 C 0.083 3.917 11 O -0.241 6.241 12 N -0.146 5.146 13 C -0.091 4.091 14 C 0.029 3.971 15 H 0.109 0.891 16 C -0.189 4.189 17 C 0.001 3.999 18 N -0.313 5.313 19 C -0.363 4.363 20 H 0.087 0.913 21 C -0.164 4.164 22 N -0.554 5.554 23 Si 0.730 3.270 24 H -0.217 1.217 25 H -0.235 1.235 26 H -0.185 1.185 27 C 0.019 3.981 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.204 0.796 36 H 0.257 0.743 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -25.553 1.602 2.151 25.693 hybrid contribution -0.630 -0.255 -1.552 1.695 sum -26.183 1.347 0.598 26.225 Atomic orbital electron populations 1.21801 0.94962 1.02252 1.01928 1.22085 0.96139 0.96879 1.03546 1.22241 0.80747 0.97383 1.03592 1.47853 1.05648 1.50512 1.29893 1.16955 0.87247 0.80082 0.80783 1.91282 1.11550 1.58824 1.68706 1.21378 0.92264 0.98673 1.04826 1.22412 0.98851 0.91750 0.96275 1.70320 1.05679 1.27512 1.17763 1.20207 0.93170 0.83693 0.94638 1.84826 1.18227 1.88301 1.32747 1.46043 1.21596 1.12633 1.34338 1.22767 0.98438 0.83187 1.04663 1.22169 0.93076 0.93083 0.88770 0.89061 1.23264 0.98558 0.98983 0.98049 1.21912 0.92162 0.92535 0.93260 1.44047 1.04335 1.15854 1.67060 1.18349 0.79718 1.44643 0.93556 0.91317 1.25771 0.95640 0.96966 0.97978 1.69795 0.99606 1.50703 1.35305 0.86587 0.77695 0.77379 0.85344 1.21710 1.23452 1.18485 1.21502 0.86194 0.92865 0.97541 0.92266 0.91970 0.92802 0.90582 0.91054 0.89018 0.91618 0.79622 0.74338 0.87806 0.89506 0.89228 0.90571 0.91864 0.95011 0.95310 0.92889 0.95252 0.94942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.83 37.16 0.37 -0.34 16 2 C -0.15 -1.03 4.87 -26.73 -0.13 -1.16 16 3 C 0.08 0.76 4.68 -4.04 -0.02 0.74 16 4 N -0.60 -8.23 2.61 -165.66 -0.43 -8.66 16 5 C 0.57 9.44 6.07 -12.98 -0.08 9.36 16 6 O -0.44 -9.61 10.85 5.16 0.06 -9.56 16 7 C -0.06 -0.82 5.84 -81.97 -0.48 -1.30 16 8 C 0.06 0.88 11.85 -17.50 -0.21 0.68 16 9 N -0.48 -7.10 11.22 -14.62 -0.16 -7.26 16 10 C 0.38 4.60 9.01 -89.58 -0.81 3.79 16 11 O -0.44 -3.88 13.53 -17.30 -0.23 -4.12 16 12 N -0.45 -5.07 2.60 -122.12 -0.32 -5.38 16 13 C 0.05 0.38 8.38 59.84 0.50 0.88 16 14 C 0.13 2.06 3.42 -66.10 -0.23 1.84 16 15 H 0.09 1.14 6.34 -51.92 -0.33 0.81 16 16 C -0.15 -2.59 6.59 -24.58 -0.16 -2.75 16 17 C 0.13 2.85 5.03 -2.53 -0.01 2.83 16 18 N -0.59 -14.86 1.57 -170.07 -0.27 -15.13 16 19 C -0.23 -7.06 10.50 -15.06 -0.16 -7.21 16 20 H 0.07 2.31 8.06 -52.48 -0.42 1.89 16 21 C 0.04 1.12 5.50 -17.43 -0.10 1.02 16 22 N -0.91 -29.26 13.97 55.49 0.78 -28.48 16 23 Si 0.90 23.34 25.11 -169.99 -4.27 19.07 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.31 -8.01 7.11 56.52 0.40 -7.61 16 26 H -0.26 -6.27 5.19 56.52 0.29 -5.97 16 27 C 0.14 3.02 5.95 -3.07 -0.02 3.00 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.19 5.96 -51.93 -0.31 -0.12 16 31 H 0.08 0.57 6.63 -51.93 -0.34 0.23 16 32 H 0.07 0.52 6.35 -51.93 -0.33 0.19 16 33 H 0.09 0.77 2.49 -51.93 -0.13 0.64 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.19 2.62 8.06 -52.49 -0.42 2.20 16 36 H 0.40 1.26 9.06 45.56 0.41 1.67 16 37 H 0.10 0.88 4.20 -51.93 -0.22 0.66 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.41 4.77 -51.93 -0.25 0.16 16 40 H 0.08 1.32 7.23 -51.93 -0.38 0.95 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.03 0.75 6.06 -51.93 -0.31 0.44 16 43 H 0.03 0.70 3.79 -51.93 -0.20 0.51 16 44 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.03 0.72 6.71 -51.93 -0.35 0.37 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -38.26 341.26 -6.59 -44.85 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.36 Total: -1.84 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -1.53 Total: 11.37 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -0.41 Total: -64.92 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.18 Total: -13.67 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.27 Total: 19.07 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -38.26 -6.59 -44.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753318459.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.516 kcal (2) G-P(sol) polarization free energy of solvation -38.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds