Wall clock time and date at job start Tue Mar 31 2020 13:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46846 * 2 1 4 4 N 1.46502 * 109.46884 * 181.08999 * 3 2 1 5 5 C 1.34772 * 120.00277 * 84.36558 * 4 3 2 6 6 O 1.21280 * 120.00322 * 174.68261 * 5 4 3 7 7 C 1.50696 * 120.00034 * 354.95285 * 5 4 3 8 8 C 1.50702 * 109.47450 * 180.02562 * 7 5 4 9 9 N 1.29947 * 125.30590 * 90.02736 * 8 7 5 10 10 O 1.41874 * 107.41649 * 180.02562 * 9 8 7 11 11 N 1.41875 * 106.38616 * 359.97438 * 10 9 8 12 12 C 1.29952 * 107.41636 * 359.72683 * 11 10 9 13 13 C 1.50696 * 125.30810 * 180.24721 * 12 11 10 14 14 C 1.46503 * 119.99959 * 264.35985 * 4 3 2 15 15 H 1.08995 * 110.88971 * 181.01048 * 14 4 3 16 16 C 1.55163 * 111.00137 * 57.13483 * 14 4 3 17 17 C 1.54325 * 102.94366 * 277.42774 * 16 14 4 18 18 N 1.47025 * 107.26794 * 337.80713 * 17 16 14 19 19 C 1.36942 * 125.64655 * 178.89460 * 18 17 16 20 20 H 1.07993 * 120.00040 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99995 * 0.02562 * 19 18 17 22 22 N 1.31617 * 119.99955 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99897 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47020 * 90.00237 * 23 21 19 25 25 H 1.48497 * 109.47135 * 209.99772 * 23 21 19 26 26 H 1.48501 * 109.47418 * 330.00115 * 23 21 19 27 27 C 1.47422 * 108.70593 * 358.93985 * 18 17 16 28 28 H 1.08992 * 109.47252 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47147 * 300.00484 * 1 2 3 30 30 H 1.08998 * 109.46997 * 59.99891 * 1 2 3 31 31 H 1.08990 * 109.47117 * 239.99801 * 2 1 3 32 32 H 1.08998 * 109.46723 * 119.99376 * 2 1 3 33 33 H 1.09002 * 109.47516 * 61.09254 * 3 2 1 34 34 H 1.09003 * 109.47664 * 301.08554 * 3 2 1 35 35 H 1.09000 * 109.47116 * 300.00466 * 7 5 4 36 36 H 1.09002 * 109.47248 * 59.99739 * 7 5 4 37 37 H 1.09009 * 109.46880 * 270.22105 * 13 12 11 38 38 H 1.08996 * 109.47601 * 30.22031 * 13 12 11 39 39 H 1.09000 * 109.47230 * 150.22693 * 13 12 11 40 40 H 1.08994 * 110.72092 * 35.79102 * 16 14 4 41 41 H 1.09002 * 110.71875 * 158.88376 * 16 14 4 42 42 H 1.09000 * 109.88293 * 97.22256 * 17 16 14 43 43 H 1.09000 * 109.88297 * 218.39123 * 17 16 14 44 44 H 0.96997 * 119.99961 * 179.97438 * 22 21 19 45 45 H 1.08995 * 110.36972 * 265.29048 * 27 18 17 46 46 H 1.09000 * 110.36944 * 142.96623 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5048 1.4426 -0.0263 5 6 4.1577 1.3354 -1.2004 6 8 5.3662 1.4322 -1.2332 7 6 3.3858 1.1014 -2.4732 8 6 4.3435 1.0196 -3.6339 9 7 4.9035 -0.0688 -4.0703 10 8 5.7280 0.2887 -5.1681 11 7 5.5937 1.6918 -5.3295 12 6 4.7666 2.1106 -4.4188 13 6 4.3317 3.5409 -4.2287 14 6 4.2598 1.5593 1.2238 15 1 5.3326 1.5614 1.0311 16 6 3.8748 0.4282 2.2136 17 6 2.5883 0.9686 2.8727 18 7 2.5973 2.4302 2.7137 19 6 1.6184 3.2858 3.1437 20 1 1.7187 4.3482 2.9778 21 6 0.4971 2.7875 3.7929 22 7 0.3750 1.4928 3.9955 23 14 -0.8379 3.9547 4.3800 24 1 -1.8465 4.1342 3.3049 25 1 -1.4950 3.3889 5.5856 26 1 -0.2337 5.2689 4.7163 27 6 3.8342 2.8220 2.0138 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6927 1.9507 0.8996 34 1 1.6608 1.9620 -0.8801 35 1 2.8301 0.1669 -2.3946 36 1 2.6901 1.9252 -2.6330 37 1 5.0155 4.0404 -3.5423 38 1 4.3420 4.0547 -5.1899 39 1 3.3230 3.5621 -3.8161 40 1 3.6736 -0.5001 1.6791 41 1 4.6595 0.2818 2.9559 42 1 1.7132 0.5473 2.3780 43 1 2.5779 0.7110 3.9318 44 1 -0.4083 1.1446 4.4494 45 1 4.6058 3.0978 2.7325 46 1 3.6380 3.6485 1.3307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753319140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:42 Heat of formation + Delta-G solvation = 87.030117 kcal Electronic energy + Delta-G solvation = -28911.638540 eV Core-core repulsion = 25034.903518 eV Total energy + Delta-G solvation = -3876.735022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.67010 -40.12765 -37.76162 -35.12256 -34.67268 -33.54407 -32.96106 -31.87355 -29.89242 -29.16151 -28.87007 -27.48130 -25.72714 -24.47719 -22.99057 -21.59859 -21.28138 -20.37991 -20.16112 -18.69656 -17.50804 -17.12632 -16.92608 -16.23092 -15.68908 -15.33995 -14.81676 -14.66367 -14.45970 -14.40143 -13.89991 -13.65487 -13.63715 -13.32051 -13.26957 -12.95137 -12.60949 -12.28802 -12.09393 -11.97337 -11.88798 -11.78933 -11.60755 -11.38888 -11.17676 -11.04458 -11.01918 -10.93905 -10.76062 -10.66113 -10.39166 -10.23925 -10.20253 -9.99824 -9.75787 -9.54662 -8.76511 -8.35380 -6.92781 -5.84427 -3.19102 0.41616 1.78728 2.51308 2.60754 2.94273 3.22751 3.30288 3.37804 3.38729 3.70543 4.35651 4.38329 4.53409 4.59286 4.91184 5.02717 5.06619 5.14634 5.22915 5.32268 5.35849 5.38486 5.40788 5.46887 5.58821 5.61873 5.64774 5.79064 5.82509 6.03205 6.10188 6.21571 6.26828 6.38847 6.43263 6.51353 6.59810 6.64325 6.73294 6.79912 6.99299 7.45126 7.50191 7.65124 7.71938 8.11258 8.22787 9.08531 9.67743 10.32792 11.25904 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.003497 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.228228 B = 8005.645171 C = 8035.515085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.080 3.920 4 N -0.577 5.577 5 C 0.518 3.482 6 O -0.547 6.547 7 C -0.083 4.083 8 C 0.101 3.899 9 N -0.263 5.263 10 O 0.023 5.977 11 N -0.282 5.282 12 C 0.089 3.911 13 C -0.094 4.094 14 C 0.123 3.877 15 H 0.100 0.900 16 C -0.159 4.159 17 C 0.167 3.833 18 N -0.602 5.602 19 C -0.234 4.234 20 H 0.078 0.922 21 C -0.001 4.001 22 N -0.916 5.916 23 Si 0.908 3.092 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.125 3.875 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.061 0.939 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.253 0.747 45 H 0.031 0.969 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 0.376 -12.240 12.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C -0.043 4.043 4 N -0.308 5.308 5 C 0.304 3.696 6 O -0.425 6.425 7 C -0.124 4.124 8 C -0.083 4.083 9 N -0.006 5.006 10 O -0.117 6.117 11 N -0.028 5.028 12 C -0.094 4.094 13 C -0.152 4.152 14 C 0.019 3.981 15 H 0.118 0.882 16 C -0.198 4.198 17 C 0.043 3.957 18 N -0.329 5.329 19 C -0.362 4.362 20 H 0.095 0.905 21 C -0.198 4.198 22 N -0.563 5.563 23 Si 0.739 3.261 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.002 4.002 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.162 0.838 34 H 0.079 0.921 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.897 -0.488 -12.913 13.243 hybrid contribution -1.196 0.864 0.857 1.706 sum 1.701 0.376 -12.056 12.182 Atomic orbital electron populations 1.21663 0.94989 1.01397 1.02504 1.22063 0.96650 0.97226 1.01909 1.22366 0.77761 0.97615 1.06522 1.47787 1.07619 1.70067 1.05292 1.19946 0.87713 0.77348 0.84576 1.90717 1.14064 1.51169 1.86560 1.20506 0.96089 1.07379 0.88400 1.23844 0.97433 0.89518 0.97496 1.79910 1.02754 1.19785 0.98186 1.93370 1.59081 1.16160 1.43120 1.79881 1.14005 0.91011 1.17887 1.24512 0.93673 0.99617 0.91562 1.20601 1.03228 0.86615 1.04733 1.22292 0.95845 0.97334 0.82611 0.88245 1.23314 1.01025 0.97460 0.97978 1.21406 0.92369 0.83300 0.98663 1.44610 1.18415 1.02826 1.67031 1.19021 0.96355 0.89209 1.31613 0.90461 1.24753 0.98412 0.96051 1.00615 1.69951 1.29260 1.10327 1.46785 0.86188 0.81908 0.79882 0.78172 1.21549 1.21721 1.20779 1.21897 0.90245 0.94267 0.93745 0.93170 0.90836 0.93501 0.93548 0.90359 0.83834 0.92087 0.85679 0.85555 0.88210 0.89127 0.88799 0.91706 0.91394 0.91893 0.94073 0.93662 0.95103 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.14 -1.90 5.31 -26.73 -0.14 -2.05 16 3 C 0.08 1.15 4.16 -4.04 -0.02 1.13 16 4 N -0.58 -8.64 2.53 -163.67 -0.41 -9.05 16 5 C 0.52 7.52 7.62 -10.99 -0.08 7.43 16 6 O -0.55 -9.80 15.42 5.56 0.09 -9.72 16 7 C -0.08 -0.89 4.72 -29.04 -0.14 -1.03 16 8 C 0.10 1.28 5.68 -82.38 -0.47 0.81 16 9 N -0.26 -3.98 12.98 33.74 0.44 -3.54 16 10 O 0.02 0.37 13.71 12.03 0.16 0.53 16 11 N -0.28 -3.94 12.98 33.74 0.44 -3.50 16 12 C 0.09 1.04 7.19 -82.38 -0.59 0.45 16 13 C -0.09 -0.69 10.23 36.00 0.37 -0.32 16 14 C 0.12 2.06 3.67 -65.78 -0.24 1.82 16 15 H 0.10 1.69 7.02 -51.93 -0.36 1.32 16 16 C -0.16 -2.73 6.00 -24.89 -0.15 -2.88 16 17 C 0.17 3.51 4.16 -3.06 -0.01 3.50 16 18 N -0.60 -13.22 1.90 -170.07 -0.32 -13.55 16 19 C -0.23 -5.73 9.88 -15.06 -0.15 -5.88 16 20 H 0.08 1.86 7.83 -52.49 -0.41 1.45 16 21 C 0.00 -0.03 5.49 -17.43 -0.10 -0.13 16 22 N -0.92 -23.76 10.31 55.49 0.57 -23.19 16 23 Si 0.91 20.15 29.55 -169.99 -5.02 15.13 16 24 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 C 0.13 2.34 6.52 -2.53 -0.02 2.32 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.54 6.27 -51.93 -0.33 0.22 16 32 H 0.08 1.22 4.73 -51.93 -0.25 0.98 16 33 H 0.14 2.67 4.31 -51.93 -0.22 2.45 16 34 H 0.06 0.71 6.73 -51.93 -0.35 0.36 16 35 H 0.13 1.21 6.32 -51.93 -0.33 0.88 16 36 H 0.13 0.92 6.28 -51.93 -0.33 0.59 16 37 H 0.10 0.75 8.14 -51.92 -0.42 0.32 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.48 7.13 -51.93 -0.37 0.11 16 40 H 0.06 1.06 6.82 -51.93 -0.35 0.70 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.38 4.44 -51.93 -0.23 1.15 16 43 H 0.04 1.01 7.51 -51.93 -0.39 0.62 16 44 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -29.69 360.07 -6.44 -36.13 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.44 Total: 1.75 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.37 Total: 3.59 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.71 Total: -52.83 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.25 Total: -9.18 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.69 -6.44 -36.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753319140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.156 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds