Wall clock time and date at job start Tue Mar 31 2020 13:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46846 * 2 1 4 4 N 1.46502 * 109.46884 * 181.08999 * 3 2 1 5 5 C 1.34772 * 120.00277 * 84.36558 * 4 3 2 6 6 O 1.21280 * 120.00322 * 174.68261 * 5 4 3 7 7 C 1.50696 * 120.00034 * 354.95285 * 5 4 3 8 8 C 1.50702 * 109.47450 * 180.02562 * 7 5 4 9 9 N 1.29947 * 125.30590 * 90.02736 * 8 7 5 10 10 O 1.41874 * 107.41649 * 180.02562 * 9 8 7 11 11 N 1.41875 * 106.38616 * 359.97438 * 10 9 8 12 12 C 1.29952 * 107.41636 * 359.72683 * 11 10 9 13 13 C 1.50696 * 125.30810 * 180.24721 * 12 11 10 14 14 C 1.46503 * 119.99959 * 264.35985 * 4 3 2 15 15 H 1.08995 * 110.88971 * 181.01048 * 14 4 3 16 16 C 1.55163 * 111.00137 * 57.13483 * 14 4 3 17 17 C 1.54325 * 102.94366 * 277.42774 * 16 14 4 18 18 N 1.47025 * 107.26794 * 337.80713 * 17 16 14 19 19 C 1.36942 * 125.64655 * 178.89460 * 18 17 16 20 20 H 1.07993 * 120.00040 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99995 * 0.02562 * 19 18 17 22 22 N 1.31617 * 119.99955 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99897 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47020 * 90.00237 * 23 21 19 25 25 H 1.48497 * 109.47135 * 209.99772 * 23 21 19 26 26 H 1.48501 * 109.47418 * 330.00115 * 23 21 19 27 27 C 1.47422 * 108.70593 * 358.93985 * 18 17 16 28 28 H 1.08992 * 109.47252 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47147 * 300.00484 * 1 2 3 30 30 H 1.08998 * 109.46997 * 59.99891 * 1 2 3 31 31 H 1.08990 * 109.47117 * 239.99801 * 2 1 3 32 32 H 1.08998 * 109.46723 * 119.99376 * 2 1 3 33 33 H 1.09002 * 109.47516 * 61.09254 * 3 2 1 34 34 H 1.09003 * 109.47664 * 301.08554 * 3 2 1 35 35 H 1.09000 * 109.47116 * 300.00466 * 7 5 4 36 36 H 1.09002 * 109.47248 * 59.99739 * 7 5 4 37 37 H 1.09009 * 109.46880 * 270.22105 * 13 12 11 38 38 H 1.08996 * 109.47601 * 30.22031 * 13 12 11 39 39 H 1.09000 * 109.47230 * 150.22693 * 13 12 11 40 40 H 1.08994 * 110.72092 * 35.79102 * 16 14 4 41 41 H 1.09002 * 110.71875 * 158.88376 * 16 14 4 42 42 H 1.09000 * 109.88293 * 97.22256 * 17 16 14 43 43 H 1.09000 * 109.88297 * 218.39123 * 17 16 14 44 44 H 0.96997 * 119.99961 * 179.97438 * 22 21 19 45 45 H 1.08995 * 110.36972 * 265.29048 * 27 18 17 46 46 H 1.09000 * 110.36944 * 142.96623 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5048 1.4426 -0.0263 5 6 4.1577 1.3354 -1.2004 6 8 5.3662 1.4322 -1.2332 7 6 3.3858 1.1014 -2.4732 8 6 4.3435 1.0196 -3.6339 9 7 4.9035 -0.0688 -4.0703 10 8 5.7280 0.2887 -5.1681 11 7 5.5937 1.6918 -5.3295 12 6 4.7666 2.1106 -4.4188 13 6 4.3317 3.5409 -4.2287 14 6 4.2598 1.5593 1.2238 15 1 5.3326 1.5614 1.0311 16 6 3.8748 0.4282 2.2136 17 6 2.5883 0.9686 2.8727 18 7 2.5973 2.4302 2.7137 19 6 1.6184 3.2858 3.1437 20 1 1.7187 4.3482 2.9778 21 6 0.4971 2.7875 3.7929 22 7 0.3750 1.4928 3.9955 23 14 -0.8379 3.9547 4.3800 24 1 -1.8465 4.1342 3.3049 25 1 -1.4950 3.3889 5.5856 26 1 -0.2337 5.2689 4.7163 27 6 3.8342 2.8220 2.0138 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6927 1.9507 0.8996 34 1 1.6608 1.9620 -0.8801 35 1 2.8301 0.1669 -2.3946 36 1 2.6901 1.9252 -2.6330 37 1 5.0155 4.0404 -3.5423 38 1 4.3420 4.0547 -5.1899 39 1 3.3230 3.5621 -3.8161 40 1 3.6736 -0.5001 1.6791 41 1 4.6595 0.2818 2.9559 42 1 1.7132 0.5473 2.3780 43 1 2.5779 0.7110 3.9318 44 1 -0.4083 1.1446 4.4494 45 1 4.6058 3.0978 2.7325 46 1 3.6380 3.6485 1.3307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753319140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:41 Heat of formation + Delta-G solvation = 69.459999 kcal Electronic energy + Delta-G solvation = -28912.400437 eV Core-core repulsion = 25034.903518 eV Total energy + Delta-G solvation = -3877.496920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.64635 -41.36804 -39.16468 -36.44210 -35.66264 -34.65402 -34.29735 -33.28927 -31.30706 -30.45301 -29.63200 -28.91068 -27.01277 -26.13669 -24.04397 -22.63420 -22.43244 -21.84070 -21.48117 -19.90965 -18.83734 -18.64937 -17.93430 -17.39076 -16.79018 -16.62840 -16.43067 -15.88574 -15.62814 -15.51359 -15.30716 -14.79002 -14.57638 -14.35493 -14.25541 -13.93454 -13.81549 -13.74843 -13.47097 -13.18435 -12.90958 -12.85015 -12.82127 -12.72242 -12.63835 -12.55032 -12.39418 -12.08664 -12.01876 -11.94611 -11.81262 -11.70866 -11.66676 -11.46259 -11.33718 -10.79565 -10.59333 -9.65431 -8.71648 -7.74695 -5.09067 -0.56433 0.87001 1.48353 1.50244 1.53111 1.56070 1.62109 1.95838 2.13125 2.56498 2.80272 3.38426 3.45376 3.58808 3.72642 3.83237 3.93262 4.07240 4.08208 4.18003 4.27510 4.33438 4.38820 4.44951 4.54316 4.63351 4.68871 4.72310 4.75964 4.78795 4.94154 5.00412 5.02421 5.06730 5.10710 5.17742 5.39850 5.46869 5.51078 5.58720 5.75226 5.77011 5.82711 5.93876 6.28731 6.48951 7.07292 7.20170 7.85419 8.49843 9.33896 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.003497 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.228228 B = 8005.645171 C = 8035.515085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.082 3.918 4 N -0.576 5.576 5 C 0.522 3.478 6 O -0.583 6.583 7 C -0.077 4.077 8 C 0.107 3.893 9 N -0.291 5.291 10 O -0.014 6.014 11 N -0.305 5.305 12 C 0.100 3.900 13 C -0.097 4.097 14 C 0.135 3.865 15 H 0.102 0.898 16 C -0.147 4.147 17 C 0.180 3.820 18 N -0.612 5.612 19 C -0.236 4.236 20 H 0.079 0.921 21 C -0.047 4.047 22 N -0.938 5.938 23 Si 0.963 3.037 24 H -0.282 1.282 25 H -0.304 1.304 26 H -0.278 1.278 27 C 0.126 3.874 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.143 0.857 36 H 0.173 0.827 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.054 0.946 43 H -0.003 1.003 44 H 0.245 0.755 45 H 0.030 0.970 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 1.591 -13.954 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C -0.040 4.040 4 N -0.306 5.306 5 C 0.310 3.690 6 O -0.463 6.463 7 C -0.117 4.117 8 C -0.077 4.077 9 N -0.036 5.036 10 O -0.148 6.148 11 N -0.054 5.054 12 C -0.083 4.083 13 C -0.154 4.154 14 C 0.030 3.970 15 H 0.120 0.880 16 C -0.186 4.186 17 C 0.055 3.945 18 N -0.339 5.339 19 C -0.364 4.364 20 H 0.097 0.903 21 C -0.242 4.242 22 N -0.586 5.586 23 Si 0.793 3.207 24 H -0.209 1.209 25 H -0.231 1.231 26 H -0.203 1.203 27 C 0.000 4.000 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.161 0.839 36 H 0.190 0.810 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.015 0.985 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.056 0.712 -14.666 14.827 hybrid contribution -0.918 0.556 1.438 1.794 sum 1.137 1.268 -13.228 13.338 Atomic orbital electron populations 1.21589 0.94774 1.01727 1.01801 1.21992 0.96720 0.96725 1.01914 1.22301 0.77177 0.98082 1.06409 1.47763 1.07794 1.70135 1.04903 1.20436 0.87360 0.76042 0.85173 1.90720 1.15884 1.52675 1.87071 1.20676 0.95635 1.10154 0.85237 1.24270 0.96706 0.89257 0.97513 1.79864 1.03682 1.21289 0.98753 1.93346 1.60088 1.17464 1.43921 1.79871 1.15766 0.90211 1.19551 1.25218 0.91949 1.01215 0.89944 1.20911 1.04791 0.83689 1.06022 1.22039 0.96109 0.95611 0.83227 0.88041 1.23177 0.99163 0.98048 0.98200 1.21143 0.94034 0.83200 0.96116 1.44724 1.18987 1.02992 1.67151 1.19270 0.96779 0.89678 1.30722 0.90293 1.25347 1.00242 0.97124 1.01455 1.70132 1.29266 1.11568 1.47669 0.85316 0.79851 0.78352 0.77174 1.20915 1.23070 1.20306 1.21964 0.88820 0.95446 0.93762 0.92416 0.94828 0.90752 0.90778 0.93022 0.87745 0.88226 0.83888 0.81004 0.87950 0.87482 0.85620 0.90553 0.90805 0.92847 0.98517 0.94586 0.95254 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.91 71.98 0.71 -2.74 16 2 C -0.14 -3.34 5.31 30.59 0.16 -3.17 16 3 C 0.08 2.14 4.16 86.38 0.36 2.50 16 4 N -0.58 -15.65 2.53 -790.12 -2.00 -17.65 16 5 C 0.52 13.38 7.62 87.66 0.67 14.05 16 6 O -0.58 -19.58 15.42 -3.03 -0.05 -19.63 16 7 C -0.08 -1.30 4.72 29.10 0.14 -1.16 16 8 C 0.11 2.41 5.68 43.49 0.25 2.66 16 9 N -0.29 -8.43 12.98 -47.16 -0.61 -9.04 16 10 O -0.01 -0.44 13.71 70.17 0.96 0.52 16 11 N -0.30 -8.20 12.98 -47.16 -0.61 -8.81 16 12 C 0.10 2.06 7.19 43.49 0.31 2.37 16 13 C -0.10 -1.02 10.23 71.23 0.73 -0.29 16 14 C 0.13 4.31 3.67 46.38 0.17 4.48 16 15 H 0.10 3.28 7.02 -2.39 -0.02 3.26 16 16 C -0.15 -4.99 6.00 31.79 0.19 -4.80 16 17 C 0.18 7.70 4.16 86.73 0.36 8.06 16 18 N -0.61 -26.92 1.90 -691.99 -1.32 -28.24 16 19 C -0.24 -11.53 9.88 84.03 0.83 -10.70 16 20 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 21 C -0.05 -2.39 5.49 84.86 0.47 -1.92 16 22 N -0.94 -49.98 10.31 21.65 0.22 -49.75 16 23 Si 0.96 41.57 29.55 68.60 2.03 43.60 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 26 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 27 C 0.13 4.59 6.52 86.86 0.57 5.15 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.43 6.27 -2.39 -0.02 1.41 16 32 H 0.05 1.56 4.73 -2.39 -0.01 1.55 16 33 H 0.10 3.73 4.31 -2.39 -0.01 3.72 16 34 H 0.10 1.80 6.73 -2.39 -0.02 1.79 16 35 H 0.14 2.02 6.32 -2.39 -0.02 2.00 16 36 H 0.17 1.33 6.28 -2.39 -0.01 1.31 16 37 H 0.10 1.14 8.14 -2.38 -0.02 1.13 16 38 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.13 0.53 7.13 -2.39 -0.02 0.52 16 40 H 0.08 2.42 6.82 -2.39 -0.02 2.40 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 42 H 0.05 2.40 4.44 -2.39 -0.01 2.39 16 43 H 0.00 -0.18 7.51 -2.39 -0.02 -0.20 16 44 H 0.24 12.99 8.31 -92.71 -0.77 12.21 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -68.05 360.07 5.55 -62.50 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.01 Total: 12.01 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 5.91 Total: 14.48 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -4.31 Total: -113.49 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.92 Total: -19.10 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -68.05 5.55 -62.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753319140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.963 kcal (2) G-P(sol) polarization free energy of solvation -68.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds