Wall clock time and date at job start Tue Mar 31 2020 13:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47238 * 2 1 4 4 N 1.46495 * 109.46943 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00655 * 90.00088 * 4 3 2 6 6 O 1.21280 * 120.00633 * 179.97438 * 5 4 3 7 7 C 1.50701 * 119.99874 * 359.97438 * 5 4 3 8 8 C 1.50700 * 109.47688 * 180.02562 * 7 5 4 9 9 N 1.29952 * 125.30379 * 270.23070 * 8 7 5 10 10 O 1.41882 * 107.41137 * 180.24309 * 9 8 7 11 11 N 1.41882 * 106.38826 * 359.71508 * 10 9 8 12 12 C 1.29956 * 107.41154 * 359.97438 * 11 10 9 13 13 C 1.50703 * 125.30113 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99746 * 269.99862 * 4 3 2 15 15 H 1.09004 * 110.63972 * 1.68564 * 14 4 3 16 16 C 1.55154 * 110.72174 * 125.02835 * 14 4 3 17 17 C 1.54905 * 101.58267 * 153.86650 * 16 14 4 18 18 N 1.47422 * 104.83130 * 322.98474 * 17 16 14 19 19 C 1.36935 * 125.64877 * 204.09197 * 18 17 16 20 20 H 1.07999 * 120.00427 * 180.02562 * 19 18 17 21 21 C 1.38815 * 120.00058 * 0.04570 * 19 18 17 22 22 N 1.31622 * 119.99982 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00154 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47064 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47224 * 119.99931 * 23 21 19 26 26 H 1.48506 * 109.46853 * 240.00366 * 23 21 19 27 27 C 1.47021 * 108.70287 * 24.13253 * 18 17 16 28 28 H 1.09009 * 109.46726 * 299.99721 * 1 2 3 29 29 H 1.09002 * 109.47323 * 59.99375 * 1 2 3 30 30 H 1.08995 * 109.46995 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46385 * 239.99878 * 2 1 3 32 32 H 1.08993 * 109.47135 * 120.00674 * 2 1 3 33 33 H 1.08995 * 109.47460 * 60.00134 * 3 2 1 34 34 H 1.09003 * 109.47140 * 300.00103 * 3 2 1 35 35 H 1.09007 * 109.47146 * 59.99591 * 7 5 4 36 36 H 1.09002 * 109.47114 * 300.00649 * 7 5 4 37 37 H 1.09002 * 109.47152 * 90.02565 * 13 12 11 38 38 H 1.09001 * 109.46980 * 330.02666 * 13 12 11 39 39 H 1.09004 * 109.47113 * 210.02646 * 13 12 11 40 40 H 1.09007 * 110.99969 * 271.93648 * 16 14 4 41 41 H 1.08999 * 111.00289 * 35.78527 * 16 14 4 42 42 H 1.09010 * 110.36590 * 204.15094 * 17 16 14 43 43 H 1.08997 * 110.36852 * 81.83035 * 17 16 14 44 44 H 0.97001 * 120.00013 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.88285 * 239.51887 * 27 18 17 46 46 H 1.09003 * 109.88345 * 118.35939 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1785 1.4425 -1.1680 6 8 5.3913 1.4429 -1.1685 7 6 3.4246 1.4422 -2.4729 8 6 4.4034 1.4418 -3.6187 9 7 4.8945 2.5022 -4.1873 10 8 5.7657 2.0660 -5.2186 11 7 5.7397 0.6476 -5.1914 12 6 4.9326 0.2917 -4.2371 13 6 4.6073 -1.1297 -3.8564 14 6 4.2380 1.4422 1.2679 15 1 3.5474 1.4121 2.1107 16 6 5.2338 0.2538 1.3263 17 6 6.3053 0.7938 2.3060 18 7 6.4179 2.2290 1.9884 19 6 7.5098 3.0177 2.2351 20 1 7.4933 4.0630 1.9640 21 6 8.6381 2.4736 2.8333 22 7 8.6583 1.1997 3.1638 23 14 10.1279 3.5493 3.1692 24 1 9.8535 4.9335 2.7063 25 1 10.4113 3.5614 4.6268 26 1 11.3035 3.0083 2.4407 27 6 5.1634 2.6735 1.3639 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 2.7975 2.3320 -2.5304 36 1 2.7981 0.5520 -2.5303 37 1 5.3137 -1.4743 -3.1012 38 1 4.6780 -1.7671 -4.7378 39 1 3.5949 -1.1757 -3.4549 40 1 4.7533 -0.6392 1.7263 41 1 5.6653 0.0570 0.3449 42 1 7.2589 0.2925 2.1393 43 1 5.9795 0.6578 3.3372 44 1 9.4469 0.8194 3.5815 45 1 5.3641 3.0651 0.3667 46 1 4.6951 3.4421 1.9788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753319141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:44 Heat of formation + Delta-G solvation = 62.174874 kcal Electronic energy + Delta-G solvation = -28565.894371 eV Core-core repulsion = 24688.081544 eV Total energy + Delta-G solvation = -3877.812827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.64539 -41.33549 -38.57306 -37.09852 -35.67461 -34.68462 -34.32984 -33.21653 -31.33881 -30.48130 -29.65069 -28.75503 -26.89684 -26.33413 -23.97757 -22.86312 -22.34673 -21.94159 -21.66889 -19.82872 -18.97979 -18.20602 -18.02745 -17.23840 -16.97034 -16.73599 -16.41600 -15.85400 -15.56622 -15.39550 -15.32212 -14.99027 -14.69517 -14.31519 -14.24133 -14.15790 -13.82941 -13.72025 -13.43345 -13.21501 -12.99852 -12.90367 -12.87780 -12.78840 -12.73574 -12.55703 -12.36361 -12.18582 -12.05577 -12.02248 -11.90803 -11.83236 -11.68642 -11.51274 -11.27799 -10.76673 -10.54199 -9.58312 -8.86601 -7.79352 -5.22054 -0.55971 0.87480 1.39884 1.42574 1.47464 1.52078 1.60393 1.94773 2.10917 2.47251 2.80275 3.29141 3.39629 3.59618 3.76358 3.85567 3.93575 4.04445 4.09112 4.16675 4.28039 4.30711 4.40575 4.43908 4.55408 4.62026 4.70679 4.71679 4.73900 4.80656 4.88246 5.00082 5.02183 5.08732 5.09769 5.15866 5.39444 5.41014 5.44413 5.62873 5.67918 5.79222 5.81475 5.81878 6.30748 6.46322 7.10143 7.22460 7.78324 8.40855 9.22189 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010495 B = 0.004432 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.396956 B = 6315.615759 C = 8105.364978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.095 3.905 4 N -0.592 5.592 5 C 0.507 3.493 6 O -0.564 6.564 7 C -0.071 4.071 8 C 0.105 3.895 9 N -0.295 5.295 10 O -0.021 6.021 11 N -0.310 5.310 12 C 0.099 3.901 13 C -0.095 4.095 14 C 0.157 3.843 15 H 0.121 0.879 16 C -0.137 4.137 17 C 0.158 3.842 18 N -0.619 5.619 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.066 4.066 22 N -0.947 5.947 23 Si 0.976 3.024 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.294 1.294 27 C 0.128 3.872 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.151 0.849 36 H 0.180 0.820 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.135 0.865 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.063 0.937 43 H -0.005 1.005 44 H 0.247 0.753 45 H 0.012 0.988 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.491 -7.607 -10.441 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C -0.026 4.026 4 N -0.323 5.323 5 C 0.294 3.706 6 O -0.442 6.442 7 C -0.111 4.111 8 C -0.079 4.079 9 N -0.040 5.040 10 O -0.154 6.154 11 N -0.059 5.059 12 C -0.085 4.085 13 C -0.152 4.152 14 C 0.053 3.947 15 H 0.138 0.862 16 C -0.176 4.176 17 C 0.033 3.967 18 N -0.345 5.345 19 C -0.366 4.366 20 H 0.087 0.913 21 C -0.258 4.258 22 N -0.597 5.597 23 Si 0.805 3.195 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.221 1.221 27 C 0.002 3.998 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.169 0.831 36 H 0.198 0.802 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.153 0.847 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.013 0.987 44 H 0.056 0.944 45 H 0.030 0.970 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -22.894 -6.695 -11.300 26.394 hybrid contribution 1.347 0.507 0.852 1.673 sum -21.547 -6.188 -10.448 24.733 Atomic orbital electron populations 1.21692 0.93779 1.02390 1.02675 1.21966 0.96982 0.95746 1.03207 1.22182 0.75976 0.98765 1.05643 1.47933 1.08095 1.72403 1.03917 1.20662 0.87540 0.76437 0.85912 1.90897 1.16251 1.49457 1.87623 1.20732 0.95025 1.11173 0.84202 1.24440 0.97039 0.88937 0.97518 1.79848 1.03017 1.21279 0.99902 1.93349 1.59131 1.15003 1.47902 1.79857 1.16838 0.90346 1.18865 1.25306 0.91344 1.01288 0.90515 1.20920 1.05960 0.83820 1.04501 1.21893 0.92874 0.93914 0.86068 0.86166 1.23165 0.96668 0.97390 1.00348 1.21624 0.97851 0.84062 0.93176 1.44575 1.12151 1.07309 1.70423 1.19402 0.92473 0.92314 1.32363 0.91265 1.25569 1.00831 0.97760 1.01656 1.70064 1.28994 1.12272 1.48355 0.85040 0.79138 0.78026 0.77335 1.19634 1.20977 1.22075 1.21647 0.87144 0.96033 0.94966 0.92763 0.91029 0.92271 0.90318 0.92525 0.89116 0.87246 0.83134 0.80245 0.88637 0.87502 0.84722 0.89404 0.91788 0.91905 0.98688 0.94363 0.97029 0.96139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 71.98 0.71 0.09 16 2 C -0.14 -0.99 6.26 30.59 0.19 -0.79 16 3 C 0.10 0.95 5.19 86.38 0.45 1.40 16 4 N -0.59 -12.92 2.54 -791.27 -2.01 -14.93 16 5 C 0.51 13.09 6.77 87.66 0.59 13.68 16 6 O -0.56 -22.69 12.38 -3.03 -0.04 -22.73 16 7 C -0.07 -1.03 4.60 29.10 0.13 -0.90 16 8 C 0.11 2.53 5.68 43.49 0.25 2.78 16 9 N -0.29 -9.50 12.98 -47.16 -0.61 -10.12 16 10 O -0.02 -0.74 13.71 70.14 0.96 0.22 16 11 N -0.31 -9.45 12.98 -47.15 -0.61 -10.06 16 12 C 0.10 2.26 7.19 43.49 0.31 2.57 16 13 C -0.09 -1.09 10.23 71.24 0.73 -0.37 16 14 C 0.16 4.93 3.44 46.18 0.16 5.09 16 15 H 0.12 3.12 7.88 -2.39 -0.02 3.10 16 16 C -0.14 -5.14 6.39 31.98 0.20 -4.94 16 17 C 0.16 8.15 5.89 86.85 0.51 8.66 16 18 N -0.62 -34.29 3.39 -691.99 -2.35 -36.64 16 19 C -0.24 -14.44 10.27 84.03 0.86 -13.57 16 20 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 21 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 22 N -0.95 -59.37 10.09 21.65 0.22 -59.15 16 23 Si 0.98 48.99 29.55 68.60 2.03 51.02 16 24 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.29 -14.77 7.11 99.48 0.71 -14.07 16 27 C 0.13 5.67 6.49 86.73 0.56 6.23 16 28 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 29 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.08 0.34 7.22 -2.38 -0.02 0.32 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.86 7.96 -2.39 -0.02 0.84 16 34 H 0.11 0.45 6.44 -2.39 -0.02 0.43 16 35 H 0.15 1.40 7.40 -2.38 -0.02 1.38 16 36 H 0.18 0.54 6.17 -2.39 -0.01 0.52 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.13 0.34 7.13 -2.38 -0.02 0.32 16 40 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 41 H 0.06 2.69 5.81 -2.39 -0.01 2.68 16 42 H 0.06 3.79 5.87 -2.38 -0.01 3.77 16 43 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 44 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 45 H 0.01 0.57 6.28 -2.39 -0.01 0.56 16 46 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -91.34 370.35 4.71 -86.62 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: 0.99 Total: -0.63 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 6.14 Total: 16.41 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -5.36 Total: -130.90 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.92 Total: -22.51 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.02 kcal Total: -91.34 4.71 -86.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753319141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.798 kcal (2) G-P(sol) polarization free energy of solvation -91.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds