Wall clock time and date at job start Tue Mar 31 2020 13:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47074 * 2 1 4 4 N 1.46498 * 109.47339 * 119.99612 * 2 1 3 5 5 C 1.34268 * 125.75514 * 275.31275 * 4 2 1 6 6 C 1.38043 * 107.41688 * 180.11003 * 5 4 2 7 7 C 1.47427 * 126.41626 * 179.87460 * 6 5 4 8 8 O 1.21612 * 119.99629 * 359.70411 * 7 6 5 9 9 N 1.34775 * 120.00043 * 179.71136 * 7 6 5 10 10 C 1.46504 * 119.99531 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46883 * 179.97438 * 10 9 7 12 12 O 1.42904 * 110.63717 * 66.68974 * 11 10 9 13 13 C 1.55157 * 110.72017 * 190.02618 * 11 10 9 14 14 C 1.54912 * 101.58222 * 153.86788 * 13 11 10 15 15 N 1.47428 * 104.82731 * 322.99247 * 14 13 11 16 16 C 1.36947 * 125.64382 * 204.16447 * 15 14 13 17 17 H 1.08002 * 119.99654 * 179.97438 * 16 15 14 18 18 C 1.38809 * 119.99944 * 359.95732 * 16 15 14 19 19 N 1.31618 * 120.00044 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99985 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46939 * 90.00244 * 20 18 16 22 22 H 1.48498 * 109.47429 * 209.99853 * 20 18 16 23 23 H 1.48499 * 109.47047 * 330.00311 * 20 18 16 24 24 C 1.47019 * 108.70697 * 24.12806 * 15 14 13 25 25 C 1.41296 * 107.16767 * 359.60609 * 6 5 4 26 26 N 1.30438 * 108.02666 * 0.24298 * 25 6 5 27 27 H 1.09000 * 109.47199 * 60.00373 * 1 2 3 28 28 H 1.09005 * 109.46674 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47281 * 300.00006 * 1 2 3 30 30 H 1.08996 * 109.47708 * 240.00040 * 2 1 3 31 31 H 1.09002 * 109.47288 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46803 * 299.99869 * 3 2 1 33 33 H 1.09002 * 109.47072 * 59.99865 * 3 2 1 34 34 H 1.07997 * 126.29169 * 359.95660 * 5 4 2 35 35 H 0.96992 * 120.00503 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.46891 * 60.00097 * 10 9 7 37 37 H 1.08993 * 109.47378 * 299.99469 * 10 9 7 38 38 H 0.96691 * 114.00106 * 300.69862 * 12 11 10 39 39 H 1.08999 * 110.99951 * 271.94153 * 13 11 10 40 40 H 1.08993 * 111.00563 * 35.79125 * 13 11 10 41 41 H 1.08988 * 110.36915 * 204.15285 * 14 13 11 42 42 H 1.08998 * 110.36600 * 81.82216 * 14 13 11 43 43 H 0.96996 * 119.99988 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.87875 * 239.52020 * 24 15 14 45 45 H 1.09006 * 109.88321 * 118.36181 * 24 15 14 46 46 H 1.08009 * 125.98092 * 180.24250 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1847 -0.1375 2.4083 6 6 2.6618 -1.1223 3.2498 7 6 2.9923 -0.9684 4.6783 8 8 2.8554 0.1112 5.2211 9 7 3.4461 -2.0241 5.3825 10 6 3.7749 -1.8709 6.8019 11 6 4.2628 -3.2096 7.3598 12 8 5.5109 -3.5768 6.7685 13 6 4.3796 -3.1502 8.9058 14 6 4.1957 -4.6399 9.2890 15 7 3.1884 -5.1515 8.3418 16 6 2.3705 -6.2297 8.5519 17 1 1.6619 -6.5259 7.7925 18 6 2.4524 -6.9419 9.7405 19 7 3.3166 -6.5813 10.6655 20 14 1.3363 -8.4120 10.0273 21 1 2.0028 -9.6435 9.5325 22 1 1.0604 -8.5482 11.4800 23 1 0.0586 -8.2133 9.2972 24 6 3.2068 -4.3122 7.1349 25 6 2.7683 -2.3070 2.4872 26 7 2.3838 -2.0393 1.2698 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.9847 0.8897 2.6752 35 1 3.5550 -2.8853 4.9497 36 1 2.8872 -1.5520 7.3482 37 1 4.5593 -1.1226 6.9145 38 1 5.4792 -3.6654 5.8062 39 1 5.3613 -2.7870 9.2097 40 1 3.5876 -2.5360 9.3341 41 1 3.8320 -4.7261 10.3128 42 1 5.1350 -5.1804 9.1723 43 1 3.3741 -7.0792 11.4959 44 1 2.2263 -3.8610 6.9823 45 1 3.4787 -4.9149 6.2683 46 1 3.1084 -3.2662 2.8489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754760481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:10 Heat of formation + Delta-G solvation = 17.742941 kcal Electronic energy + Delta-G solvation = -27240.573503 eV Core-core repulsion = 23360.833963 eV Total energy + Delta-G solvation = -3879.739540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.68435 -39.55555 -38.23494 -36.19578 -35.08632 -34.09488 -32.07721 -30.73892 -30.63220 -29.45602 -28.07516 -27.87281 -25.79944 -24.26942 -23.11933 -22.39924 -20.64116 -20.26794 -19.88127 -19.82849 -18.36259 -16.91727 -16.63881 -15.89179 -15.84256 -15.52513 -15.33054 -15.00145 -14.71475 -14.52665 -14.09437 -13.94677 -13.63722 -13.43591 -13.23299 -13.08659 -12.90620 -12.78434 -12.72884 -12.18959 -12.06128 -11.96006 -11.79667 -11.55249 -11.26981 -11.01916 -10.86794 -10.73441 -10.32352 -10.13686 -10.06726 -9.85862 -9.73556 -9.68694 -9.37625 -9.11226 -8.79070 -8.63787 -6.84203 -5.64973 -3.07193 1.34031 1.97382 2.00133 3.27950 3.40581 3.45242 3.45741 3.47446 3.93718 4.27090 4.42553 4.45777 4.46574 4.51235 4.53249 4.86491 4.89588 4.94481 5.01143 5.09955 5.17675 5.23905 5.25038 5.42995 5.48947 5.51271 5.52063 5.56760 5.67850 5.94114 6.04255 6.16904 6.26864 6.42952 6.44719 6.53187 6.55571 6.63443 6.67457 7.28903 7.56454 7.57984 7.62798 7.85985 7.98380 8.31046 8.35960 9.21648 9.82148 10.46588 11.38780 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.002587 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.010489 B =10820.233515 C =11751.126371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 C -0.168 4.168 4 N -0.357 5.357 5 C 0.128 3.872 6 C -0.292 4.292 7 C 0.595 3.405 8 O -0.553 6.553 9 N -0.723 5.723 10 C 0.107 3.893 11 C 0.105 3.895 12 O -0.544 6.544 13 C -0.128 4.128 14 C 0.156 3.844 15 N -0.600 5.600 16 C -0.224 4.224 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.920 5.920 20 Si 0.915 3.085 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.116 3.884 25 C 0.082 3.918 26 N -0.297 5.297 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.185 0.815 35 H 0.398 0.602 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.365 0.635 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.018 0.982 43 H 0.253 0.747 44 H 0.032 0.968 45 H 0.023 0.977 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 15.551 -21.000 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.136 5.136 5 C -0.023 4.023 6 C -0.307 4.307 7 C 0.383 3.617 8 O -0.432 6.432 9 N -0.374 5.374 10 C -0.017 4.017 11 C 0.064 3.936 12 O -0.348 6.348 13 C -0.167 4.167 14 C 0.031 3.969 15 N -0.326 5.326 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.746 3.254 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C -0.011 4.011 25 C -0.106 4.106 26 N -0.116 5.116 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.202 0.798 35 H 0.232 0.768 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.211 0.789 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.041 0.959 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.944 15.760 -21.113 26.418 hybrid contribution -0.570 -0.983 0.081 1.139 sum -2.514 14.777 -21.032 25.827 Atomic orbital electron populations 1.22264 0.93168 1.03651 1.03423 1.21407 0.95159 0.92904 0.85538 1.22250 1.02569 0.93739 1.04075 1.48789 1.48810 1.07595 1.08424 1.22848 0.95347 0.99590 0.84529 1.20269 1.19799 0.94774 0.95825 1.17203 0.76200 0.83724 0.84574 1.90764 1.54555 1.26462 1.71458 1.45760 1.67593 1.12643 1.11407 1.22074 1.01203 0.98249 0.80183 1.22560 0.84158 0.91175 0.95740 1.86620 1.32148 1.91951 1.24075 1.23049 1.01395 1.02159 0.90082 1.21943 0.91487 0.85903 0.97555 1.44416 1.42342 1.32314 1.13517 1.19058 1.12462 1.03095 1.00630 0.90534 1.24795 0.99397 0.99701 0.96715 1.69793 1.37912 1.41261 1.07918 0.86064 0.79878 0.82340 0.77145 1.21621 1.21618 1.20712 1.21925 0.95718 0.91661 0.91789 1.24105 0.97269 0.98863 0.90365 1.77180 1.20965 0.92724 1.20688 0.90164 0.91361 0.91625 0.87519 0.91232 0.89623 0.91197 0.79823 0.76804 0.90299 0.90694 0.78918 0.91079 0.90576 0.87453 0.96385 0.93662 0.95062 0.95939 0.79301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 9.52 37.15 0.35 -0.48 16 2 C 0.15 0.88 3.91 -67.93 -0.27 0.61 16 3 C -0.17 -0.65 8.83 37.16 0.33 -0.32 16 4 N -0.36 -3.30 3.50 -54.32 -0.19 -3.49 16 5 C 0.13 1.28 10.39 -16.56 -0.17 1.11 16 6 C -0.29 -3.42 6.13 -105.07 -0.64 -4.06 16 7 C 0.60 8.34 7.81 -12.52 -0.10 8.25 16 8 O -0.55 -9.53 16.90 5.27 0.09 -9.44 16 9 N -0.72 -9.30 5.12 -61.38 -0.31 -9.62 16 10 C 0.11 1.59 4.80 -4.04 -0.02 1.57 16 11 C 0.11 1.80 0.93 -88.78 -0.08 1.72 16 12 O -0.54 -9.03 13.10 -35.23 -0.46 -9.50 16 13 C -0.13 -2.47 6.26 -24.58 -0.15 -2.62 16 14 C 0.16 3.84 5.88 -2.53 -0.01 3.83 16 15 N -0.60 -15.33 3.39 -170.07 -0.58 -15.91 16 16 C -0.22 -6.25 10.27 -15.06 -0.15 -6.40 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 20 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.12 2.32 5.76 -3.07 -0.02 2.30 16 25 C 0.08 0.87 11.50 -16.98 -0.20 0.67 16 26 N -0.30 -3.34 12.50 30.86 0.39 -2.95 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.26 7.13 -51.93 -0.37 -0.11 16 34 H 0.18 1.49 7.24 -52.49 -0.38 1.11 16 35 H 0.40 4.28 6.42 -40.82 -0.26 4.02 16 36 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.36 4.49 8.44 45.56 0.38 4.88 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.08 1.39 7.96 -51.93 -0.41 0.98 16 41 H 0.11 2.94 5.87 -51.94 -0.31 2.64 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.03 0.63 7.82 -51.93 -0.41 0.22 16 45 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 46 H 0.19 1.48 7.50 -52.48 -0.39 1.09 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -35.44 376.88 -7.42 -42.86 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.33 Total: 5.87 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.23 Total: 5.79 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.14 Total: -58.34 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.37 Total: -18.94 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.44 -7.42 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.604 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds