Wall clock time and date at job start Tue Mar 31 2020 13:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47074 * 2 1 4 4 N 1.46498 * 109.47339 * 119.99612 * 2 1 3 5 5 C 1.34268 * 125.75514 * 275.31275 * 4 2 1 6 6 C 1.38043 * 107.41688 * 180.11003 * 5 4 2 7 7 C 1.47427 * 126.41626 * 179.87460 * 6 5 4 8 8 O 1.21612 * 119.99629 * 359.70411 * 7 6 5 9 9 N 1.34775 * 120.00043 * 179.71136 * 7 6 5 10 10 C 1.46504 * 119.99531 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46883 * 179.97438 * 10 9 7 12 12 O 1.42904 * 110.63717 * 66.68974 * 11 10 9 13 13 C 1.55157 * 110.72017 * 190.02618 * 11 10 9 14 14 C 1.54912 * 101.58222 * 153.86788 * 13 11 10 15 15 N 1.47428 * 104.82731 * 322.99247 * 14 13 11 16 16 C 1.36947 * 125.64382 * 204.16447 * 15 14 13 17 17 H 1.08002 * 119.99654 * 179.97438 * 16 15 14 18 18 C 1.38809 * 119.99944 * 359.95732 * 16 15 14 19 19 N 1.31618 * 120.00044 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99985 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46939 * 90.00244 * 20 18 16 22 22 H 1.48498 * 109.47429 * 209.99853 * 20 18 16 23 23 H 1.48499 * 109.47047 * 330.00311 * 20 18 16 24 24 C 1.47019 * 108.70697 * 24.12806 * 15 14 13 25 25 C 1.41296 * 107.16767 * 359.60609 * 6 5 4 26 26 N 1.30438 * 108.02666 * 0.24298 * 25 6 5 27 27 H 1.09000 * 109.47199 * 60.00373 * 1 2 3 28 28 H 1.09005 * 109.46674 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47281 * 300.00006 * 1 2 3 30 30 H 1.08996 * 109.47708 * 240.00040 * 2 1 3 31 31 H 1.09002 * 109.47288 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46803 * 299.99869 * 3 2 1 33 33 H 1.09002 * 109.47072 * 59.99865 * 3 2 1 34 34 H 1.07997 * 126.29169 * 359.95660 * 5 4 2 35 35 H 0.96992 * 120.00503 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.46891 * 60.00097 * 10 9 7 37 37 H 1.08993 * 109.47378 * 299.99469 * 10 9 7 38 38 H 0.96691 * 114.00106 * 300.69862 * 12 11 10 39 39 H 1.08999 * 110.99951 * 271.94153 * 13 11 10 40 40 H 1.08993 * 111.00563 * 35.79125 * 13 11 10 41 41 H 1.08988 * 110.36915 * 204.15285 * 14 13 11 42 42 H 1.08998 * 110.36600 * 81.82216 * 14 13 11 43 43 H 0.96996 * 119.99988 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.87875 * 239.52020 * 24 15 14 45 45 H 1.09006 * 109.88321 * 118.36181 * 24 15 14 46 46 H 1.08009 * 125.98092 * 180.24250 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1847 -0.1375 2.4083 6 6 2.6618 -1.1223 3.2498 7 6 2.9923 -0.9684 4.6783 8 8 2.8554 0.1112 5.2211 9 7 3.4461 -2.0241 5.3825 10 6 3.7749 -1.8709 6.8019 11 6 4.2628 -3.2096 7.3598 12 8 5.5109 -3.5768 6.7685 13 6 4.3796 -3.1502 8.9058 14 6 4.1957 -4.6399 9.2890 15 7 3.1884 -5.1515 8.3418 16 6 2.3705 -6.2297 8.5519 17 1 1.6619 -6.5259 7.7925 18 6 2.4524 -6.9419 9.7405 19 7 3.3166 -6.5813 10.6655 20 14 1.3363 -8.4120 10.0273 21 1 2.0028 -9.6435 9.5325 22 1 1.0604 -8.5482 11.4800 23 1 0.0586 -8.2133 9.2972 24 6 3.2068 -4.3122 7.1349 25 6 2.7683 -2.3070 2.4872 26 7 2.3838 -2.0393 1.2698 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.9847 0.8897 2.6752 35 1 3.5550 -2.8853 4.9497 36 1 2.8872 -1.5520 7.3482 37 1 4.5593 -1.1226 6.9145 38 1 5.4792 -3.6654 5.8062 39 1 5.3613 -2.7870 9.2097 40 1 3.5876 -2.5360 9.3341 41 1 3.8320 -4.7261 10.3128 42 1 5.1350 -5.1804 9.1723 43 1 3.3741 -7.0792 11.4959 44 1 2.2263 -3.8610 6.9823 45 1 3.4787 -4.9149 6.2683 46 1 3.1084 -3.2662 2.8489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754760481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:09 Heat of formation + Delta-G solvation = -9.240393 kcal Electronic energy + Delta-G solvation = -27241.743588 eV Core-core repulsion = 23360.833963 eV Total energy + Delta-G solvation = -3880.909625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.46142 -40.81286 -39.59071 -36.77110 -36.72876 -35.28571 -33.96159 -31.70819 -31.46427 -31.04247 -29.50748 -28.25291 -27.48535 -25.67400 -24.17860 -23.29233 -22.23622 -21.31048 -21.10251 -20.90439 -19.32048 -18.84546 -17.80672 -16.94959 -16.72983 -16.72859 -16.52086 -16.15859 -15.92652 -15.63550 -15.46440 -15.09878 -14.90247 -14.73576 -14.39614 -13.94333 -13.87753 -13.81308 -13.55193 -13.26582 -13.20944 -13.09890 -12.90411 -12.76247 -12.40852 -12.35176 -12.33300 -12.06999 -12.00030 -11.97900 -11.73854 -11.56643 -10.97778 -10.83953 -10.72683 -10.59838 -10.20614 -9.66053 -8.88840 -7.76393 -5.21166 0.52602 1.15300 1.33732 1.47638 1.49523 1.58205 2.22459 2.46363 2.50082 3.19834 3.33563 3.38578 3.49458 3.74408 3.74638 3.84632 3.90433 3.95245 3.98841 4.05547 4.11173 4.34589 4.53294 4.60815 4.62840 4.64572 4.70723 4.76669 4.79761 4.84977 4.87675 4.98693 5.02518 5.12124 5.14943 5.19462 5.35134 5.43732 5.47734 5.63589 5.81543 5.89298 6.30758 6.46789 6.60063 6.83291 7.10826 7.25676 7.78105 8.41873 9.25706 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.002587 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.010489 B =10820.233515 C =11751.126371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 C -0.163 4.163 4 N -0.351 5.351 5 C 0.134 3.866 6 C -0.315 4.315 7 C 0.598 3.402 8 O -0.590 6.590 9 N -0.714 5.714 10 C 0.122 3.878 11 C 0.126 3.874 12 O -0.554 6.554 13 C -0.120 4.120 14 C 0.159 3.841 15 N -0.623 5.623 16 C -0.238 4.238 17 H 0.083 0.917 18 C -0.069 4.069 19 N -0.949 5.949 20 Si 0.981 3.019 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.268 1.268 24 C 0.112 3.888 25 C 0.084 3.916 26 N -0.322 5.322 27 H 0.105 0.895 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.201 0.799 35 H 0.409 0.591 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.385 0.615 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.075 0.925 42 H -0.015 1.015 43 H 0.247 0.753 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.448 16.566 -23.305 28.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 C -0.221 4.221 4 N -0.130 5.130 5 C -0.019 4.019 6 C -0.330 4.330 7 C 0.387 3.613 8 O -0.471 6.471 9 N -0.366 5.366 10 C -0.003 4.003 11 C 0.084 3.916 12 O -0.362 6.362 13 C -0.159 4.159 14 C 0.034 3.966 15 N -0.349 5.349 16 C -0.367 4.367 17 H 0.101 0.899 18 C -0.261 4.261 19 N -0.599 5.599 20 Si 0.809 3.191 21 H -0.215 1.215 22 H -0.220 1.220 23 H -0.193 1.193 24 C -0.013 4.013 25 C -0.104 4.104 26 N -0.141 5.141 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.218 0.782 35 H 0.245 0.755 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.235 0.765 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.003 0.997 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.638 16.767 -23.502 28.990 hybrid contribution -0.353 -1.272 0.679 1.484 sum -2.991 15.495 -22.823 27.748 Atomic orbital electron populations 1.22244 0.92399 1.02814 1.04543 1.21777 0.95746 0.93832 0.84414 1.22255 1.02080 0.92399 1.05390 1.49128 1.47721 1.07049 1.09079 1.23142 0.94095 1.00076 0.84554 1.20175 1.21899 0.95999 0.94904 1.17457 0.75398 0.83134 0.85298 1.90743 1.56274 1.27800 1.72332 1.45603 1.67269 1.13164 1.10532 1.21768 1.00894 0.96512 0.81108 1.22196 0.83655 0.91272 0.94463 1.86586 1.31518 1.91961 1.26096 1.22905 1.02688 0.98317 0.92002 1.21659 0.89640 0.89081 0.96188 1.44704 1.42037 1.32536 1.15609 1.19460 1.12696 1.03786 1.00755 0.89922 1.25657 1.01107 1.02633 0.96737 1.70051 1.39487 1.42273 1.08098 0.85037 0.78498 0.78899 0.76635 1.21457 1.22025 1.19312 1.22132 0.97017 0.91979 0.90215 1.24438 0.96597 0.99398 0.89938 1.77142 1.21808 0.94014 1.21136 0.87618 0.93113 0.91936 0.87116 0.91943 0.87263 0.90947 0.78190 0.75457 0.91111 0.90166 0.76526 0.89565 0.89513 0.90719 0.99726 0.94322 0.94516 0.94522 0.77279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.52 71.98 0.69 -0.62 16 2 C 0.14 1.37 3.91 44.99 0.18 1.55 16 3 C -0.16 -0.86 8.83 71.98 0.64 -0.22 16 4 N -0.35 -5.94 3.50 -325.76 -1.14 -7.08 16 5 C 0.13 2.48 10.39 84.27 0.88 3.36 16 6 C -0.31 -6.92 6.13 -20.15 -0.12 -7.04 16 7 C 0.60 15.90 7.81 86.66 0.68 16.57 16 8 O -0.59 -19.71 16.90 -4.07 -0.07 -19.78 16 9 N -0.71 -16.99 5.12 -466.35 -2.39 -19.38 16 10 C 0.12 3.39 4.80 86.38 0.41 3.81 16 11 C 0.13 4.12 0.93 -9.60 -0.01 4.11 16 12 O -0.55 -17.30 13.10 -148.98 -1.95 -19.26 16 13 C -0.12 -4.57 6.26 31.99 0.20 -4.37 16 14 C 0.16 8.05 5.88 86.86 0.51 8.57 16 15 N -0.62 -32.00 3.39 -691.99 -2.35 -34.35 16 16 C -0.24 -13.33 10.27 84.03 0.86 -12.47 16 17 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 18 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 19 N -0.95 -57.24 10.09 21.65 0.22 -57.02 16 20 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 C 0.11 4.36 5.76 86.73 0.50 4.86 16 25 C 0.08 1.63 11.50 85.65 0.99 2.62 16 26 N -0.32 -6.78 12.50 -56.27 -0.70 -7.48 16 27 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.07 0.36 7.13 -2.39 -0.02 0.35 16 34 H 0.20 2.89 7.24 -2.91 -0.02 2.87 16 35 H 0.41 7.83 6.42 -92.71 -0.60 7.23 16 36 H 0.07 2.14 8.03 -2.39 -0.02 2.12 16 37 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.39 8.44 8.44 -74.06 -0.62 7.82 16 39 H 0.09 3.00 8.14 -2.39 -0.02 2.99 16 40 H 0.09 3.10 7.96 -2.39 -0.02 3.08 16 41 H 0.07 4.27 5.87 -2.39 -0.01 4.26 16 42 H -0.02 -0.86 8.14 -2.39 -0.02 -0.87 16 43 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 44 H 0.04 1.41 7.82 -2.38 -0.02 1.39 16 45 H 0.04 1.34 8.07 -2.38 -0.02 1.32 16 46 H 0.21 2.84 7.50 -2.91 -0.02 2.82 16 Total: -1.00 -77.77 376.88 0.28 -77.49 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.22 Total: 21.71 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 6.86 Total: 17.25 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -6.36 Total: -125.31 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -2.02 Total: -39.03 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -77.77 0.28 -77.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.250 kcal (2) G-P(sol) polarization free energy of solvation -77.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds