Wall clock time and date at job start Tue Mar 31 2020 13:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47224 * 2 1 4 4 N 1.46493 * 109.47073 * 120.00195 * 2 1 3 5 5 C 1.34259 * 125.75503 * 275.26941 * 4 2 1 6 6 C 1.38050 * 107.41792 * 180.14534 * 5 4 2 7 7 C 1.47425 * 126.41273 * 179.86742 * 6 5 4 8 8 O 1.21601 * 120.00472 * 359.71265 * 7 6 5 9 9 N 1.34778 * 120.00053 * 179.71252 * 7 6 5 10 10 C 1.46498 * 120.00405 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47139 * 180.02562 * 10 9 7 12 12 O 1.42898 * 110.88633 * 303.87721 * 11 10 9 13 13 C 1.55152 * 111.00408 * 179.97438 * 11 10 9 14 14 C 1.54318 * 102.94511 * 206.38522 * 13 11 10 15 15 N 1.47022 * 107.27253 * 22.18990 * 14 13 11 16 16 C 1.36933 * 125.65341 * 181.02674 * 15 14 13 17 17 H 1.08006 * 120.00444 * 153.90406 * 16 15 14 18 18 C 1.38817 * 119.99751 * 333.90252 * 16 15 14 19 19 N 1.31616 * 120.00100 * 145.63931 * 18 16 15 20 20 Si 1.86797 * 119.99742 * 325.63468 * 18 16 15 21 21 H 1.48495 * 109.47312 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46991 * 120.00404 * 20 18 16 23 23 H 1.48502 * 109.47132 * 239.99993 * 20 18 16 24 24 C 1.47424 * 108.69946 * 1.29134 * 15 14 13 25 25 C 1.41292 * 107.16998 * 359.60662 * 6 5 4 26 26 N 1.30454 * 108.02082 * 0.24267 * 25 6 5 27 27 H 1.09001 * 109.47312 * 60.00213 * 1 2 3 28 28 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47285 * 300.00203 * 1 2 3 30 30 H 1.09005 * 109.47164 * 240.00199 * 2 1 3 31 31 H 1.08996 * 109.47440 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47291 * 299.99903 * 3 2 1 33 33 H 1.09005 * 109.46888 * 60.00030 * 3 2 1 34 34 H 1.08003 * 126.29258 * 359.97438 * 5 4 2 35 35 H 0.97005 * 119.99678 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.47372 * 59.99647 * 10 9 7 37 37 H 1.09001 * 109.46705 * 299.99729 * 10 9 7 38 38 H 0.96701 * 113.99994 * 56.12246 * 12 11 10 39 39 H 1.09001 * 110.72609 * 88.01809 * 13 11 10 40 40 H 1.09005 * 110.72274 * 324.74668 * 13 11 10 41 41 H 1.09006 * 109.88476 * 262.77823 * 14 13 11 42 42 H 1.08998 * 109.88900 * 141.61115 * 14 13 11 43 43 H 0.97006 * 120.00091 * 5.05677 * 19 18 16 44 44 H 1.09000 * 110.36988 * 94.48149 * 24 15 14 45 45 H 1.09005 * 110.36594 * 216.80532 * 24 15 14 46 46 H 1.07997 * 125.98651 * 180.27663 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1854 -0.1376 2.4080 6 6 2.6630 -1.1224 3.2494 7 6 2.9943 -0.9683 4.6776 8 8 2.8579 0.1113 5.2204 9 7 3.4485 -2.0239 5.3817 10 6 3.7772 -1.8710 6.8012 11 6 4.2667 -3.2093 7.3584 12 8 3.2957 -4.2357 7.1450 13 6 4.6261 -3.0872 8.8627 14 6 5.6757 -4.2014 9.0589 15 7 6.2531 -4.4944 7.7389 16 6 7.2091 -5.4394 7.4779 17 1 7.2770 -5.8818 6.4949 18 6 8.0910 -5.8289 8.4767 19 7 8.5138 -7.0740 8.5324 20 14 8.6776 -4.5857 9.7415 21 1 8.0594 -3.2650 9.4611 22 1 8.2833 -5.0380 11.0999 23 1 10.1560 -4.4661 9.6693 24 6 5.6371 -3.5978 6.7439 25 6 2.7689 -2.3072 2.4868 26 7 2.3837 -2.0394 1.2695 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.9859 0.8898 2.6749 35 1 3.5577 -2.8850 4.9486 36 1 2.8895 -1.5524 7.3475 37 1 4.5614 -1.1223 6.9138 38 1 3.0400 -4.3489 6.2193 39 1 3.7497 -3.2692 9.4847 40 1 5.0569 -2.1094 9.0783 41 1 5.1975 -5.0947 9.4608 42 1 6.4570 -3.8594 9.7376 43 1 8.2682 -7.7014 7.8345 44 1 6.2548 -2.7117 6.5977 45 1 5.4937 -4.1215 5.7987 46 1 3.1087 -3.2664 2.8485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754760482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:13 Heat of formation + Delta-G solvation = 19.169740 kcal Electronic energy + Delta-G solvation = -27258.040598 eV Core-core repulsion = 23378.362929 eV Total energy + Delta-G solvation = -3879.677669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.73662 -39.66434 -38.38977 -36.23784 -35.28886 -34.10488 -32.35806 -30.80075 -30.76815 -29.75645 -28.41278 -27.93939 -25.96272 -24.06953 -22.96423 -22.37436 -20.74413 -20.34713 -20.12012 -20.02905 -18.44751 -17.46626 -16.75962 -16.04811 -15.89816 -15.66536 -15.44545 -15.03831 -14.91713 -14.61647 -14.45271 -13.88998 -13.63970 -13.46097 -13.32130 -13.25077 -13.00676 -12.87905 -12.80823 -12.76652 -12.21576 -12.00063 -11.83733 -11.76843 -11.31971 -11.28237 -11.12104 -10.79441 -10.58344 -10.43484 -9.91336 -9.90536 -9.73019 -9.53518 -9.25553 -9.19877 -8.86438 -8.22403 -7.03600 -6.29058 -3.23055 1.28644 1.92954 1.94408 3.16849 3.38057 3.48597 3.54996 3.69712 3.89638 4.23468 4.35699 4.37821 4.42833 4.45973 4.61999 4.69370 4.84784 4.87731 4.93114 5.00778 5.05884 5.13465 5.16350 5.21693 5.28740 5.44193 5.45840 5.49452 5.51836 5.72633 5.80798 5.93780 6.10738 6.14202 6.20876 6.33896 6.44387 6.46946 6.50830 6.75753 6.91669 7.23799 7.45923 7.84239 7.93249 8.22128 8.39650 9.03258 9.62994 10.36471 11.07972 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024179 B = 0.002506 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.775517 B =11171.928727 C =11536.924215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.151 3.849 3 C -0.169 4.169 4 N -0.356 5.356 5 C 0.129 3.871 6 C -0.293 4.293 7 C 0.597 3.403 8 O -0.552 6.552 9 N -0.723 5.723 10 C 0.107 3.893 11 C 0.103 3.897 12 O -0.537 6.537 13 C -0.114 4.114 14 C 0.127 3.873 15 N -0.596 5.596 16 C -0.342 4.342 17 H 0.065 0.935 18 C -0.005 4.005 19 N -0.902 5.902 20 Si 1.049 2.951 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.298 1.298 24 C 0.110 3.890 25 C 0.082 3.918 26 N -0.296 5.296 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.185 0.815 35 H 0.397 0.603 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.365 0.635 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.039 0.961 42 H 0.031 0.969 43 H 0.266 0.734 44 H 0.029 0.971 45 H 0.042 0.958 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.827 16.716 -16.235 28.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 C -0.227 4.227 4 N -0.135 5.135 5 C -0.022 4.022 6 C -0.308 4.308 7 C 0.385 3.615 8 O -0.431 6.431 9 N -0.375 5.375 10 C -0.017 4.017 11 C 0.060 3.940 12 O -0.341 6.341 13 C -0.152 4.152 14 C 0.003 3.997 15 N -0.323 5.323 16 C -0.469 4.469 17 H 0.083 0.917 18 C -0.209 4.209 19 N -0.540 5.540 20 Si 0.880 3.120 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.226 1.226 24 C -0.017 4.017 25 C -0.106 4.106 26 N -0.115 5.115 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.202 0.798 35 H 0.231 0.769 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.211 0.789 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.060 0.940 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -16.112 17.089 -15.157 27.953 hybrid contribution -0.638 -0.230 -1.427 1.580 sum -16.751 16.860 -16.584 28.980 Atomic orbital electron populations 1.22259 0.93164 1.03596 1.03420 1.21419 0.95136 0.92946 0.85550 1.22252 1.02656 0.93690 1.04071 1.48795 1.48707 1.07604 1.08430 1.22852 0.95303 0.99554 0.84532 1.20242 1.19916 0.94834 0.95799 1.17182 0.76112 0.83626 0.84577 1.90764 1.54614 1.26344 1.71410 1.45692 1.67616 1.12845 1.11312 1.21980 1.01355 0.98167 0.80240 1.22714 0.88909 0.84993 0.97344 1.86623 1.60416 1.56714 1.30327 1.22567 0.99635 1.00150 0.92888 1.21586 0.93250 0.95301 0.89611 1.44533 1.45101 1.40317 1.02321 1.19738 1.10234 1.15605 1.01310 0.91727 1.26064 0.95251 0.98787 1.00820 1.70919 1.50456 1.01388 1.31231 0.84032 0.75808 0.76445 0.75703 1.20544 1.21884 1.22592 1.22292 0.91257 0.94095 0.94012 1.24106 0.97206 0.98905 0.90390 1.77197 1.20938 0.92739 1.20598 0.90142 0.91393 0.91657 0.87470 0.91176 0.89594 0.91207 0.79799 0.76861 0.90649 0.90246 0.78884 0.90252 0.90118 0.94260 0.95187 0.92387 0.95307 0.93972 0.79310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 9.52 37.16 0.35 -0.38 16 2 C 0.15 0.83 3.91 -67.94 -0.27 0.57 16 3 C -0.17 -0.62 8.83 37.16 0.33 -0.30 16 4 N -0.36 -3.17 3.49 -54.32 -0.19 -3.36 16 5 C 0.13 1.23 10.39 -16.56 -0.17 1.06 16 6 C -0.29 -3.28 6.13 -105.07 -0.64 -3.92 16 7 C 0.60 7.92 7.81 -12.52 -0.10 7.82 16 8 O -0.55 -9.06 16.90 5.28 0.09 -8.97 16 9 N -0.72 -8.68 5.19 -61.39 -0.32 -9.00 16 10 C 0.11 1.46 4.88 -4.04 -0.02 1.44 16 11 C 0.10 1.65 0.97 -88.35 -0.09 1.56 16 12 O -0.54 -8.63 13.21 -35.23 -0.47 -9.09 16 13 C -0.11 -1.95 6.15 -24.90 -0.15 -2.10 16 14 C 0.13 2.84 6.04 -3.07 -0.02 2.82 16 15 N -0.60 -14.69 3.05 -169.93 -0.52 -15.21 16 16 C -0.34 -9.81 10.24 -15.06 -0.15 -9.97 16 17 H 0.07 1.96 8.06 -52.48 -0.42 1.54 16 18 C -0.01 -0.16 5.29 -17.43 -0.09 -0.25 16 19 N -0.90 -28.10 13.70 55.49 0.76 -27.34 16 20 Si 1.05 26.44 26.22 -169.99 -4.46 21.99 16 21 H -0.28 -6.60 6.18 56.52 0.35 -6.25 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 24 C 0.11 2.15 6.22 -2.41 -0.02 2.13 16 25 C 0.08 0.83 11.50 -16.98 -0.20 0.64 16 26 N -0.30 -3.24 12.50 30.86 0.39 -2.85 16 27 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.24 7.13 -51.93 -0.37 -0.13 16 34 H 0.19 1.40 7.24 -52.48 -0.38 1.02 16 35 H 0.40 3.95 6.23 -40.82 -0.25 3.69 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 38 H 0.36 4.39 7.69 45.56 0.35 4.74 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.03 0.69 3.85 -51.93 -0.20 0.49 16 43 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 44 H 0.03 0.57 7.99 -51.93 -0.41 0.16 16 45 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.19 1.41 7.50 -52.49 -0.39 1.01 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -36.95 374.52 -6.66 -43.60 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.35 Total: 3.47 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.23 Total: 1.11 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.12 Total: -57.75 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.38 Total: -18.06 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -4.46 Total: 21.99 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.95 -6.66 -43.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.772 kcal (2) G-P(sol) polarization free energy of solvation -36.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds