Wall clock time and date at job start Tue Mar 31 2020 13:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47224 * 2 1 4 4 N 1.46493 * 109.47073 * 120.00195 * 2 1 3 5 5 C 1.34259 * 125.75503 * 275.26941 * 4 2 1 6 6 C 1.38050 * 107.41792 * 180.14534 * 5 4 2 7 7 C 1.47425 * 126.41273 * 179.86742 * 6 5 4 8 8 O 1.21601 * 120.00472 * 359.71265 * 7 6 5 9 9 N 1.34778 * 120.00053 * 179.71252 * 7 6 5 10 10 C 1.46498 * 120.00405 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47139 * 180.02562 * 10 9 7 12 12 O 1.42898 * 110.88633 * 303.87721 * 11 10 9 13 13 C 1.55152 * 111.00408 * 179.97438 * 11 10 9 14 14 C 1.54318 * 102.94511 * 206.38522 * 13 11 10 15 15 N 1.47022 * 107.27253 * 22.18990 * 14 13 11 16 16 C 1.36933 * 125.65341 * 181.02674 * 15 14 13 17 17 H 1.08006 * 120.00444 * 153.90406 * 16 15 14 18 18 C 1.38817 * 119.99751 * 333.90252 * 16 15 14 19 19 N 1.31616 * 120.00100 * 145.63931 * 18 16 15 20 20 Si 1.86797 * 119.99742 * 325.63468 * 18 16 15 21 21 H 1.48495 * 109.47312 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46991 * 120.00404 * 20 18 16 23 23 H 1.48502 * 109.47132 * 239.99993 * 20 18 16 24 24 C 1.47424 * 108.69946 * 1.29134 * 15 14 13 25 25 C 1.41292 * 107.16998 * 359.60662 * 6 5 4 26 26 N 1.30454 * 108.02082 * 0.24267 * 25 6 5 27 27 H 1.09001 * 109.47312 * 60.00213 * 1 2 3 28 28 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47285 * 300.00203 * 1 2 3 30 30 H 1.09005 * 109.47164 * 240.00199 * 2 1 3 31 31 H 1.08996 * 109.47440 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47291 * 299.99903 * 3 2 1 33 33 H 1.09005 * 109.46888 * 60.00030 * 3 2 1 34 34 H 1.08003 * 126.29258 * 359.97438 * 5 4 2 35 35 H 0.97005 * 119.99678 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.47372 * 59.99647 * 10 9 7 37 37 H 1.09001 * 109.46705 * 299.99729 * 10 9 7 38 38 H 0.96701 * 113.99994 * 56.12246 * 12 11 10 39 39 H 1.09001 * 110.72609 * 88.01809 * 13 11 10 40 40 H 1.09005 * 110.72274 * 324.74668 * 13 11 10 41 41 H 1.09006 * 109.88476 * 262.77823 * 14 13 11 42 42 H 1.08998 * 109.88900 * 141.61115 * 14 13 11 43 43 H 0.97006 * 120.00091 * 5.05677 * 19 18 16 44 44 H 1.09000 * 110.36988 * 94.48149 * 24 15 14 45 45 H 1.09005 * 110.36594 * 216.80532 * 24 15 14 46 46 H 1.07997 * 125.98651 * 180.27663 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1854 -0.1376 2.4080 6 6 2.6630 -1.1224 3.2494 7 6 2.9943 -0.9683 4.6776 8 8 2.8579 0.1113 5.2204 9 7 3.4485 -2.0239 5.3817 10 6 3.7772 -1.8710 6.8012 11 6 4.2667 -3.2093 7.3584 12 8 3.2957 -4.2357 7.1450 13 6 4.6261 -3.0872 8.8627 14 6 5.6757 -4.2014 9.0589 15 7 6.2531 -4.4944 7.7389 16 6 7.2091 -5.4394 7.4779 17 1 7.2770 -5.8818 6.4949 18 6 8.0910 -5.8289 8.4767 19 7 8.5138 -7.0740 8.5324 20 14 8.6776 -4.5857 9.7415 21 1 8.0594 -3.2650 9.4611 22 1 8.2833 -5.0380 11.0999 23 1 10.1560 -4.4661 9.6693 24 6 5.6371 -3.5978 6.7439 25 6 2.7689 -2.3072 2.4868 26 7 2.3837 -2.0394 1.2695 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.9859 0.8898 2.6749 35 1 3.5577 -2.8850 4.9486 36 1 2.8895 -1.5524 7.3475 37 1 4.5614 -1.1223 6.9138 38 1 3.0400 -4.3489 6.2193 39 1 3.7497 -3.2692 9.4847 40 1 5.0569 -2.1094 9.0783 41 1 5.1975 -5.0947 9.4608 42 1 6.4570 -3.8594 9.7376 43 1 8.2682 -7.7014 7.8345 44 1 6.2548 -2.7117 6.5977 45 1 5.4937 -4.1215 5.7987 46 1 3.1087 -3.2664 2.8485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754760482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:12 Heat of formation + Delta-G solvation = -10.104156 kcal Electronic energy + Delta-G solvation = -27259.310009 eV Core-core repulsion = 23378.362929 eV Total energy + Delta-G solvation = -3880.947081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.47917 -40.84902 -39.66344 -36.88087 -36.74399 -35.22354 -34.37338 -31.93252 -31.48882 -31.12119 -29.80876 -28.26800 -27.45637 -25.36026 -24.05125 -23.27822 -22.42969 -21.43915 -21.18487 -20.92850 -19.58381 -19.27272 -17.87720 -17.09353 -16.97756 -16.61182 -16.41096 -16.25133 -16.09632 -15.80215 -15.42573 -15.11086 -15.02529 -14.88719 -14.64436 -14.31254 -13.91816 -13.87351 -13.53751 -13.41031 -13.22540 -13.11115 -12.98266 -12.84429 -12.49341 -12.41835 -12.35753 -12.32203 -11.99477 -11.79127 -11.65125 -11.27907 -11.03288 -10.90520 -10.61893 -10.40784 -10.21546 -9.67695 -9.14711 -8.53889 -5.46923 0.51386 1.13260 1.32095 1.44888 1.53909 1.72744 2.19643 2.44707 2.53533 2.95211 3.14127 3.34903 3.39596 3.60759 3.72822 3.79291 3.83770 3.88598 3.89594 4.03689 4.09325 4.33045 4.39341 4.45340 4.59756 4.61543 4.68654 4.71567 4.77530 4.80949 4.83201 4.86404 4.88922 4.96357 5.12206 5.13619 5.18478 5.25261 5.33414 5.41966 5.73098 5.87916 6.17268 6.43749 6.56929 6.75175 6.84274 7.23454 7.52136 8.22584 8.78025 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024179 B = 0.002506 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.775517 B =11171.928727 C =11536.924215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 C -0.164 4.164 4 N -0.351 5.351 5 C 0.135 3.865 6 C -0.315 4.315 7 C 0.600 3.400 8 O -0.587 6.587 9 N -0.716 5.716 10 C 0.120 3.880 11 C 0.122 3.878 12 O -0.551 6.551 13 C -0.108 4.108 14 C 0.118 3.882 15 N -0.617 5.617 16 C -0.334 4.334 17 H 0.032 0.968 18 C -0.061 4.061 19 N -0.937 5.937 20 Si 1.093 2.907 21 H -0.253 1.253 22 H -0.285 1.285 23 H -0.296 1.296 24 C 0.104 3.896 25 C 0.082 3.918 26 N -0.323 5.323 27 H 0.105 0.895 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.203 0.797 35 H 0.407 0.593 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.382 0.618 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.016 0.984 42 H 0.028 0.972 43 H 0.251 0.749 44 H 0.036 0.964 45 H 0.044 0.956 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.414 19.479 -16.688 31.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 C -0.222 4.222 4 N -0.130 5.130 5 C -0.018 4.018 6 C -0.330 4.330 7 C 0.389 3.611 8 O -0.468 6.468 9 N -0.368 5.368 10 C -0.005 4.005 11 C 0.079 3.921 12 O -0.358 6.358 13 C -0.146 4.146 14 C -0.007 4.007 15 N -0.344 5.344 16 C -0.463 4.463 17 H 0.049 0.951 18 C -0.258 4.258 19 N -0.578 5.578 20 Si 0.918 3.082 21 H -0.178 1.178 22 H -0.212 1.212 23 H -0.224 1.224 24 C -0.021 4.021 25 C -0.105 4.105 26 N -0.143 5.143 27 H 0.123 0.877 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.219 0.781 35 H 0.243 0.757 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.231 0.769 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -17.739 19.851 -15.670 30.892 hybrid contribution -0.236 -1.126 -1.468 1.865 sum -17.975 18.725 -17.138 31.104 Atomic orbital electron populations 1.22232 0.92141 1.02871 1.04606 1.21781 0.95927 0.93758 0.84382 1.22256 1.01981 0.92468 1.05466 1.49127 1.47678 1.07027 1.09124 1.23162 0.94075 1.00076 0.84495 1.20187 1.21854 0.95897 0.95092 1.17388 0.75401 0.83114 0.85175 1.90742 1.56309 1.27584 1.72204 1.45585 1.67202 1.13246 1.10771 1.21757 1.01539 0.96189 0.80988 1.22448 0.87050 0.86047 0.96523 1.86594 1.60041 1.56957 1.32172 1.22606 0.98837 0.99356 0.93820 1.21720 0.94388 0.96294 0.88297 1.44616 1.44456 1.40698 1.04593 1.19621 1.10828 1.16001 0.99849 0.95054 1.27254 0.95624 0.99387 1.03581 1.71041 1.52649 1.02375 1.31697 0.83466 0.75499 0.75355 0.73836 1.17773 1.21168 1.22362 1.22498 0.93055 0.93317 0.93229 1.24426 0.96582 0.99486 0.90015 1.77156 1.21876 0.94117 1.21112 0.87682 0.93020 0.91735 0.87335 0.92173 0.87267 0.90763 0.78057 0.75685 0.89852 0.90298 0.76883 0.88261 0.87505 0.96604 0.95437 0.93945 0.94634 0.93747 0.77458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.52 71.98 0.69 -0.43 16 2 C 0.14 1.31 3.91 44.99 0.18 1.49 16 3 C -0.16 -0.84 8.83 71.98 0.64 -0.20 16 4 N -0.35 -5.77 3.49 -325.76 -1.14 -6.91 16 5 C 0.14 2.37 10.39 84.28 0.88 3.25 16 6 C -0.32 -6.61 6.13 -20.15 -0.12 -6.73 16 7 C 0.60 14.88 7.81 86.66 0.68 15.56 16 8 O -0.59 -18.29 16.90 -4.04 -0.07 -18.36 16 9 N -0.72 -15.60 5.19 -466.38 -2.42 -18.02 16 10 C 0.12 2.92 4.88 86.38 0.42 3.34 16 11 C 0.12 3.58 0.97 -9.33 -0.01 3.57 16 12 O -0.55 -16.42 13.21 -148.98 -1.97 -18.39 16 13 C -0.11 -3.36 6.15 31.78 0.20 -3.16 16 14 C 0.12 5.06 6.04 86.73 0.52 5.59 16 15 N -0.62 -30.06 3.05 -691.54 -2.11 -32.17 16 16 C -0.33 -19.59 10.24 84.04 0.86 -18.73 16 17 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 18 C -0.06 -3.67 5.29 84.86 0.45 -3.22 16 19 N -0.94 -60.23 13.70 21.65 0.30 -59.93 16 20 Si 1.09 53.35 26.22 68.60 1.80 55.15 16 21 H -0.25 -11.13 6.18 99.48 0.61 -10.52 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 24 C 0.10 3.92 6.22 86.93 0.54 4.46 16 25 C 0.08 1.57 11.50 85.65 0.99 2.56 16 26 N -0.32 -6.75 12.50 -56.27 -0.70 -7.45 16 27 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.11 0.98 8.14 -2.38 -0.02 0.97 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.07 0.33 7.13 -2.38 -0.02 0.32 16 34 H 0.20 2.68 7.24 -2.91 -0.02 2.65 16 35 H 0.41 7.21 6.23 -92.70 -0.58 6.63 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 2.00 8.07 -2.39 -0.02 1.98 16 38 H 0.38 8.30 7.69 -74.06 -0.57 7.73 16 39 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.11 2.79 8.04 -2.38 -0.02 2.77 16 41 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.03 1.21 3.85 -2.39 -0.01 1.20 16 43 H 0.25 16.24 8.73 -92.70 -0.81 15.43 16 44 H 0.04 1.33 7.99 -2.39 -0.02 1.31 16 45 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.21 2.79 7.50 -2.91 -0.02 2.77 16 Total: -1.00 -81.51 374.52 0.31 -81.20 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -0.27 Total: 17.55 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 6.89 Total: 7.32 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -6.08 Total: -124.47 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -2.04 Total: -36.75 kcal Atomic # 14 Polarization: 53.35 SS G_CDS: 1.80 Total: 55.15 kcal Total: -81.51 0.31 -81.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.099 kcal (2) G-P(sol) polarization free energy of solvation -81.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds