Wall clock time and date at job start Tue Mar 31 2020 13:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46694 * 2 1 4 4 N 1.46496 * 109.46726 * 240.00574 * 2 1 3 5 5 C 1.35843 * 126.14096 * 60.02550 * 4 2 1 6 6 N 1.30177 * 109.00483 * 179.97438 * 5 4 2 7 7 C 1.35761 * 108.86579 * 359.97438 * 6 5 4 8 8 C 1.47320 * 126.23417 * 180.02562 * 7 6 5 9 9 O 1.21627 * 120.00129 * 186.83812 * 8 7 6 10 10 N 1.34784 * 119.99941 * 6.83278 * 8 7 6 11 11 C 1.47146 * 120.98033 * 6.53981 * 10 8 7 12 12 C 1.53717 * 108.16083 * 129.43092 * 11 10 8 13 13 O 1.42962 * 109.14638 * 52.53388 * 12 11 10 14 14 C 1.42963 * 114.16929 * 297.29153 * 13 12 11 15 15 H 1.08998 * 109.55130 * 302.62902 * 14 13 12 16 16 C 1.53005 * 109.51048 * 182.50302 * 14 13 12 17 17 N 1.46494 * 109.47275 * 65.25391 * 16 14 13 18 18 C 1.36934 * 120.00193 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99752 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00108 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99780 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99908 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47029 * 89.99802 * 22 20 18 24 24 H 1.48497 * 109.47231 * 210.00027 * 22 20 18 25 25 H 1.48501 * 109.47436 * 330.00360 * 22 20 18 26 26 C 1.47149 * 120.97928 * 186.82140 * 10 8 7 27 27 C 1.35387 * 126.12990 * 239.70431 * 4 2 1 28 28 H 1.09000 * 109.47587 * 60.00061 * 1 2 3 29 29 H 1.08995 * 109.47125 * 299.99143 * 1 2 3 30 30 H 1.09008 * 109.46784 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47149 * 120.00221 * 2 1 3 32 32 H 1.09001 * 109.47061 * 60.00005 * 3 2 1 33 33 H 1.09001 * 109.47272 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47054 * 300.00266 * 3 2 1 35 35 H 1.08003 * 125.49806 * 359.97438 * 5 4 2 36 36 H 1.08998 * 109.68518 * 249.20407 * 11 10 8 37 37 H 1.08995 * 109.68321 * 9.76728 * 11 10 8 38 38 H 1.09000 * 109.65757 * 292.57068 * 12 11 10 39 39 H 1.08994 * 109.44530 * 172.37248 * 12 11 10 40 40 H 1.08997 * 109.46539 * 185.25605 * 16 14 13 41 41 H 1.09000 * 109.47256 * 305.25013 * 16 14 13 42 42 H 0.97006 * 120.00080 * 359.97438 * 17 16 14 43 43 H 0.97005 * 119.99667 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.68583 * 350.23596 * 26 10 8 45 45 H 1.08995 * 109.68447 * 110.75489 * 26 10 8 46 46 H 1.07999 * 126.56313 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.7685 -0.3364 -2.4837 6 7 2.3643 -1.1782 -3.2781 7 6 3.0179 -2.1021 -2.5282 8 6 3.8167 -3.2302 -3.0378 9 8 4.2528 -4.0638 -2.2670 10 7 4.0642 -3.3385 -4.3583 11 6 3.6713 -2.2717 -5.2925 12 6 4.8925 -1.9174 -6.1563 13 8 5.4155 -3.1123 -6.7414 14 6 5.8947 -4.0678 -5.7920 15 1 6.6638 -3.6099 -5.1701 16 6 6.4842 -5.2709 -6.5309 17 7 7.6701 -4.8502 -7.2810 18 6 8.3699 -5.7632 -8.0239 19 1 8.0473 -6.7933 -8.0571 20 6 9.4933 -5.3644 -8.7351 21 7 9.8856 -4.1086 -8.6958 22 14 10.4475 -6.6097 -9.7491 23 1 9.8960 -6.6526 -11.1273 24 1 11.8780 -6.2144 -9.8005 25 1 10.3270 -7.9522 -9.1258 26 6 4.7299 -4.5297 -4.9090 27 6 2.8044 -1.7925 -1.2168 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.1720 0.5074 -2.7976 36 1 2.8578 -2.6215 -5.9281 37 1 3.3491 -1.3937 -4.7328 38 1 5.6576 -1.4509 -5.5357 39 1 4.5915 -1.2275 -6.9446 40 1 6.7640 -6.0388 -5.8096 41 1 5.7420 -5.6733 -7.2203 42 1 7.9597 -3.9249 -7.2515 43 1 10.6709 -3.8301 -9.1926 44 1 5.1089 -5.1477 -4.0950 45 1 4.0210 -5.1033 -5.5059 46 1 3.1874 -2.3257 -0.3593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755006136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:06 Heat of formation + Delta-G solvation = 11.088108 kcal Electronic energy + Delta-G solvation = -27211.890328 eV Core-core repulsion = 23331.862213 eV Total energy + Delta-G solvation = -3880.028115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64632 -39.90031 -38.02339 -36.55512 -34.84002 -34.21867 -32.14317 -31.54860 -30.21838 -29.74651 -28.04646 -27.81644 -25.75353 -23.74337 -23.36385 -23.16795 -21.77667 -20.89936 -20.59232 -19.10802 -17.64776 -17.07709 -16.64845 -16.35266 -16.01816 -15.83564 -15.16595 -15.02170 -14.89545 -14.49331 -14.31194 -14.27815 -14.13852 -13.65962 -13.62737 -13.10832 -13.01939 -12.93093 -12.88185 -12.53236 -12.33007 -12.16942 -12.05559 -11.81968 -11.41953 -10.82837 -10.77207 -10.73317 -10.50776 -10.27052 -10.15357 -10.00639 -9.74116 -9.64105 -9.43342 -8.95784 -8.77887 -8.26302 -6.79489 -5.64274 -2.92407 1.35825 2.11807 2.15053 3.04731 3.44595 3.52102 3.56388 3.58527 3.83026 4.05342 4.14910 4.21553 4.24800 4.35474 4.67374 4.72408 4.78034 4.89820 4.96632 5.00511 5.04139 5.14113 5.28329 5.31357 5.38574 5.40327 5.50921 5.55791 5.68375 5.71101 5.75051 5.89085 6.00129 6.06659 6.15865 6.27316 6.39659 6.52966 6.68709 6.80666 6.83564 7.37729 7.56308 7.67835 7.80234 8.23803 8.53995 9.65374 10.23873 10.59903 11.58713 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.034633 B = 0.002218 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.275146 B =12620.701653 C =12846.434326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.124 3.876 3 C -0.165 4.165 4 N -0.451 5.451 5 C 0.187 3.813 6 N -0.460 5.460 7 C -0.056 4.056 8 C 0.602 3.398 9 O -0.548 6.548 10 N -0.598 5.598 11 C 0.054 3.946 12 C 0.046 3.954 13 O -0.362 6.362 14 C 0.075 3.925 15 H 0.062 0.938 16 C 0.163 3.837 17 N -0.727 5.727 18 C -0.236 4.236 19 H 0.071 0.929 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.085 3.915 27 C 0.036 3.964 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.208 0.792 36 H 0.069 0.931 37 H 0.140 0.860 38 H 0.049 0.951 39 H 0.100 0.900 40 H 0.036 0.964 41 H 0.029 0.971 42 H 0.387 0.613 43 H 0.254 0.746 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.040 14.111 20.678 34.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 C -0.222 4.222 4 N -0.134 5.134 5 C -0.096 4.096 6 N -0.179 5.179 7 C -0.184 4.184 8 C 0.390 3.610 9 O -0.426 6.426 10 N -0.330 5.330 11 C -0.069 4.069 12 C -0.032 4.032 13 O -0.280 6.280 14 C 0.017 3.983 15 H 0.080 0.920 16 C 0.035 3.965 17 N -0.371 5.371 18 C -0.367 4.367 19 H 0.089 0.911 20 C -0.212 4.212 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.038 4.038 27 C -0.103 4.103 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.225 0.775 36 H 0.088 0.912 37 H 0.157 0.843 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.221 0.779 43 H 0.064 0.936 44 H 0.119 0.881 45 H 0.095 0.905 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -22.805 13.551 20.059 33.258 hybrid contribution 0.543 -0.165 0.437 0.717 sum -22.262 13.386 20.497 33.089 Atomic orbital electron populations 1.22194 0.92744 1.03547 1.03700 1.21603 0.95810 0.94269 0.86126 1.22199 1.02494 0.93841 1.03711 1.45647 1.37447 1.22020 1.08262 1.25151 1.03564 1.02017 0.78818 1.70436 1.11523 1.04404 1.31584 1.20528 1.07200 1.00224 0.90490 1.16955 0.78850 0.83464 0.81707 1.90787 1.52993 1.42685 1.56129 1.47902 1.58430 1.20369 1.06308 1.23325 0.97284 0.93219 0.93060 1.23044 0.94460 0.88327 0.97403 1.88120 1.80244 1.27363 1.32270 1.22747 0.93553 0.91523 0.90521 0.92003 1.20623 0.90013 0.91821 0.94041 1.42241 1.28298 1.10272 1.56273 1.19242 1.05497 0.91245 1.20763 0.91136 1.24747 0.98991 0.96309 1.01147 1.69684 1.27167 1.14894 1.46402 0.86168 0.79220 0.80372 0.80308 1.21789 1.21873 1.20789 1.22352 0.95548 0.87375 0.98519 1.22591 0.97414 0.90660 0.99635 0.91368 0.90144 0.91503 0.87776 0.90137 0.91428 0.91355 0.77546 0.91243 0.84273 0.93306 0.88157 0.94684 0.95292 0.77916 0.93637 0.88136 0.90502 0.79584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.34 9.24 37.16 0.34 0.00 16 2 C 0.12 0.38 3.57 -67.93 -0.24 0.14 16 3 C -0.16 -0.36 9.24 37.16 0.34 -0.02 16 4 N -0.45 -2.95 2.59 -111.24 -0.29 -3.24 16 5 C 0.19 1.38 11.52 -89.91 -1.04 0.34 16 6 N -0.46 -5.07 7.80 -11.03 -0.09 -5.16 16 7 C -0.06 -0.71 6.66 -83.09 -0.55 -1.26 16 8 C 0.60 9.56 7.69 -12.56 -0.10 9.46 16 9 O -0.55 -10.00 16.36 5.25 0.09 -9.91 16 10 N -0.60 -9.41 3.01 -173.33 -0.52 -9.93 16 11 C 0.05 0.75 6.27 -3.32 -0.02 0.73 16 12 C 0.05 0.70 7.00 37.53 0.26 0.96 16 13 O -0.36 -7.10 10.33 -35.23 -0.36 -7.47 16 14 C 0.08 1.45 2.81 -26.58 -0.07 1.37 16 15 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 16 C 0.16 3.61 5.93 -4.04 -0.02 3.58 16 17 N -0.73 -19.95 5.55 -59.91 -0.33 -20.28 16 18 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 19 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 21 N -0.93 -29.58 13.06 55.49 0.72 -28.86 16 22 Si 0.91 23.33 29.55 -169.99 -5.02 18.31 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.08 1.41 5.94 -3.53 -0.02 1.39 16 27 C 0.04 0.34 11.22 -16.64 -0.19 0.15 16 28 H 0.07 0.13 7.94 -51.93 -0.41 -0.28 16 29 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.07 0.22 8.14 -51.92 -0.42 -0.20 16 31 H 0.10 0.24 8.07 -51.93 -0.42 -0.18 16 32 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.14 7.94 -51.93 -0.41 -0.28 16 35 H 0.21 0.75 8.06 -52.48 -0.42 0.32 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.14 1.79 4.30 -55.17 -0.24 1.55 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.39 11.29 7.67 -40.82 -0.31 10.98 16 43 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.10 1.69 7.06 -51.93 -0.37 1.33 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -37.33 376.97 -8.88 -46.21 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.20 Total: 5.53 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -1.55 Total: 9.12 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -0.50 Total: -67.47 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.28 Total: -17.38 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.33 -8.88 -46.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755006136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.294 kcal (2) G-P(sol) polarization free energy of solvation -37.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds