Wall clock time and date at job start Tue Mar 31 2020 13:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46694 * 2 1 4 4 N 1.46496 * 109.46726 * 240.00574 * 2 1 3 5 5 C 1.35843 * 126.14096 * 60.02550 * 4 2 1 6 6 N 1.30177 * 109.00483 * 179.97438 * 5 4 2 7 7 C 1.35761 * 108.86579 * 359.97438 * 6 5 4 8 8 C 1.47320 * 126.23417 * 180.02562 * 7 6 5 9 9 O 1.21627 * 120.00129 * 186.83812 * 8 7 6 10 10 N 1.34784 * 119.99941 * 6.83278 * 8 7 6 11 11 C 1.47146 * 120.98033 * 6.53981 * 10 8 7 12 12 C 1.53717 * 108.16083 * 129.43092 * 11 10 8 13 13 O 1.42962 * 109.14638 * 52.53388 * 12 11 10 14 14 C 1.42963 * 114.16929 * 297.29153 * 13 12 11 15 15 H 1.08998 * 109.55130 * 302.62902 * 14 13 12 16 16 C 1.53005 * 109.51048 * 182.50302 * 14 13 12 17 17 N 1.46494 * 109.47275 * 65.25391 * 16 14 13 18 18 C 1.36934 * 120.00193 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99752 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00108 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99780 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99908 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47029 * 89.99802 * 22 20 18 24 24 H 1.48497 * 109.47231 * 210.00027 * 22 20 18 25 25 H 1.48501 * 109.47436 * 330.00360 * 22 20 18 26 26 C 1.47149 * 120.97928 * 186.82140 * 10 8 7 27 27 C 1.35387 * 126.12990 * 239.70431 * 4 2 1 28 28 H 1.09000 * 109.47587 * 60.00061 * 1 2 3 29 29 H 1.08995 * 109.47125 * 299.99143 * 1 2 3 30 30 H 1.09008 * 109.46784 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47149 * 120.00221 * 2 1 3 32 32 H 1.09001 * 109.47061 * 60.00005 * 3 2 1 33 33 H 1.09001 * 109.47272 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47054 * 300.00266 * 3 2 1 35 35 H 1.08003 * 125.49806 * 359.97438 * 5 4 2 36 36 H 1.08998 * 109.68518 * 249.20407 * 11 10 8 37 37 H 1.08995 * 109.68321 * 9.76728 * 11 10 8 38 38 H 1.09000 * 109.65757 * 292.57068 * 12 11 10 39 39 H 1.08994 * 109.44530 * 172.37248 * 12 11 10 40 40 H 1.08997 * 109.46539 * 185.25605 * 16 14 13 41 41 H 1.09000 * 109.47256 * 305.25013 * 16 14 13 42 42 H 0.97006 * 120.00080 * 359.97438 * 17 16 14 43 43 H 0.97005 * 119.99667 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.68583 * 350.23596 * 26 10 8 45 45 H 1.08995 * 109.68447 * 110.75489 * 26 10 8 46 46 H 1.07999 * 126.56313 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.7685 -0.3364 -2.4837 6 7 2.3643 -1.1782 -3.2781 7 6 3.0179 -2.1021 -2.5282 8 6 3.8167 -3.2302 -3.0378 9 8 4.2528 -4.0638 -2.2670 10 7 4.0642 -3.3385 -4.3583 11 6 3.6713 -2.2717 -5.2925 12 6 4.8925 -1.9174 -6.1563 13 8 5.4155 -3.1123 -6.7414 14 6 5.8947 -4.0678 -5.7920 15 1 6.6638 -3.6099 -5.1701 16 6 6.4842 -5.2709 -6.5309 17 7 7.6701 -4.8502 -7.2810 18 6 8.3699 -5.7632 -8.0239 19 1 8.0473 -6.7933 -8.0571 20 6 9.4933 -5.3644 -8.7351 21 7 9.8856 -4.1086 -8.6958 22 14 10.4475 -6.6097 -9.7491 23 1 9.8960 -6.6526 -11.1273 24 1 11.8780 -6.2144 -9.8005 25 1 10.3270 -7.9522 -9.1258 26 6 4.7299 -4.5297 -4.9090 27 6 2.8044 -1.7925 -1.2168 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.1720 0.5074 -2.7976 36 1 2.8578 -2.6215 -5.9281 37 1 3.3491 -1.3937 -4.7328 38 1 5.6576 -1.4509 -5.5357 39 1 4.5915 -1.2275 -6.9446 40 1 6.7640 -6.0388 -5.8096 41 1 5.7420 -5.6733 -7.2203 42 1 7.9597 -3.9249 -7.2515 43 1 10.6709 -3.8301 -9.1926 44 1 5.1089 -5.1477 -4.0950 45 1 4.0210 -5.1033 -5.5059 46 1 3.1874 -2.3257 -0.3593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755006136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:05 Heat of formation + Delta-G solvation = -13.949141 kcal Electronic energy + Delta-G solvation = -27212.976025 eV Core-core repulsion = 23331.862213 eV Total energy + Delta-G solvation = -3881.113812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.32287 -41.16156 -39.37408 -37.01488 -36.61846 -35.69901 -33.92815 -32.28594 -31.77639 -30.71468 -29.19377 -28.18311 -27.38945 -25.14223 -24.49114 -24.03006 -23.26989 -22.09021 -21.43236 -20.11829 -19.22586 -18.26113 -17.80209 -17.61568 -17.08460 -16.85981 -16.66322 -16.16266 -15.94806 -15.65484 -15.53598 -15.07203 -15.02451 -15.00238 -14.81502 -14.38243 -14.26786 -14.01168 -13.87754 -13.38503 -13.17536 -13.11439 -13.01465 -12.76954 -12.63762 -12.36848 -12.25815 -12.11911 -12.05189 -11.88449 -11.71142 -11.38915 -11.21055 -10.96135 -10.81379 -10.49560 -9.81531 -9.47706 -9.01496 -7.93490 -5.23656 0.51097 1.38685 1.47443 1.50982 1.57948 1.59460 1.94371 2.42330 2.57082 2.76886 3.27074 3.39995 3.53861 3.58201 3.80605 3.90292 3.95106 3.95150 4.06015 4.12664 4.15243 4.21374 4.36468 4.37902 4.49916 4.59189 4.64677 4.69761 4.70737 4.76236 4.84500 4.85797 4.92602 4.97415 5.03721 5.08529 5.21621 5.26985 5.34038 5.48511 5.59012 6.11016 6.23556 6.27606 6.31755 6.74548 7.09144 7.33083 8.06337 8.32056 9.30468 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.034633 B = 0.002218 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.275146 B =12620.701653 C =12846.434326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 C -0.161 4.161 4 N -0.442 5.442 5 C 0.203 3.797 6 N -0.489 5.489 7 C -0.095 4.095 8 C 0.596 3.404 9 O -0.583 6.583 10 N -0.604 5.604 11 C 0.064 3.936 12 C 0.041 3.959 13 O -0.389 6.389 14 C 0.089 3.911 15 H 0.044 0.956 16 C 0.162 3.838 17 N -0.741 5.741 18 C -0.247 4.247 19 H 0.080 0.920 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.981 3.019 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.267 1.267 26 C 0.094 3.906 27 C 0.048 3.952 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.247 0.753 36 H 0.074 0.926 37 H 0.156 0.844 38 H 0.042 0.958 39 H 0.124 0.876 40 H 0.046 0.954 41 H 0.032 0.968 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.052 15.163 21.669 36.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 C -0.219 4.219 4 N -0.123 5.123 5 C -0.080 4.080 6 N -0.208 5.208 7 C -0.222 4.222 8 C 0.387 3.613 9 O -0.464 6.464 10 N -0.336 5.336 11 C -0.058 4.058 12 C -0.036 4.036 13 O -0.308 6.308 14 C 0.030 3.970 15 H 0.062 0.938 16 C 0.035 3.965 17 N -0.384 5.384 18 C -0.379 4.379 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.809 3.191 23 H -0.213 1.213 24 H -0.220 1.220 25 H -0.192 1.192 26 C -0.029 4.029 27 C -0.094 4.094 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.173 0.827 38 H 0.061 0.939 39 H 0.142 0.858 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -24.873 14.606 21.076 35.724 hybrid contribution 1.045 -0.375 0.241 1.136 sum -23.828 14.232 21.317 34.996 Atomic orbital electron populations 1.22188 0.91540 1.03064 1.04988 1.21931 0.96631 0.94587 0.84920 1.22195 1.01510 0.93176 1.05004 1.45902 1.36105 1.20950 1.09307 1.25851 1.02010 1.01528 0.78651 1.70233 1.12770 1.05117 1.32725 1.20210 1.09267 1.00822 0.91899 1.17466 0.78579 0.83997 0.81267 1.90745 1.54611 1.44245 1.56799 1.48007 1.58352 1.20363 1.06847 1.23371 0.96410 0.93385 0.92630 1.23296 0.94782 0.87127 0.98349 1.88062 1.80642 1.28737 1.33325 1.22451 0.94036 0.90503 0.90039 0.93773 1.20757 0.88432 0.93411 0.93923 1.42436 1.29714 1.09426 1.56782 1.19693 1.05696 0.91965 1.20545 0.90254 1.25681 1.00299 0.98383 1.02826 1.69859 1.27697 1.16989 1.47625 0.85029 0.77178 0.78375 0.78480 1.21288 1.22047 1.19190 1.22126 0.94897 0.87984 0.97918 1.22735 0.96754 0.91065 0.98832 0.90753 0.88244 0.92824 0.86868 0.88238 0.92920 0.90735 0.73731 0.90736 0.82743 0.93922 0.85804 0.93620 0.95036 0.79454 0.93993 0.88681 0.89491 0.78633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.15 9.24 71.98 0.67 0.51 16 2 C 0.12 0.39 3.57 44.99 0.16 0.55 16 3 C -0.16 -0.22 9.24 71.98 0.67 0.45 16 4 N -0.44 -4.75 2.59 -505.86 -1.31 -6.06 16 5 C 0.20 2.44 11.52 180.10 2.08 4.51 16 6 N -0.49 -10.06 7.80 -188.81 -1.47 -11.53 16 7 C -0.09 -2.36 6.66 40.50 0.27 -2.09 16 8 C 0.60 19.29 7.69 86.63 0.67 19.95 16 9 O -0.58 -21.96 16.36 -4.12 -0.07 -22.03 16 10 N -0.60 -19.23 3.01 -820.53 -2.47 -21.71 16 11 C 0.06 1.75 6.27 86.50 0.54 2.29 16 12 C 0.04 1.27 7.00 72.22 0.51 1.77 16 13 O -0.39 -15.53 10.33 -148.98 -1.54 -17.06 16 14 C 0.09 3.50 2.81 30.70 0.09 3.58 16 15 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 16 C 0.16 7.28 5.93 86.38 0.51 7.79 16 17 N -0.74 -41.62 5.55 -343.46 -1.91 -43.53 16 18 C -0.25 -14.77 9.99 84.03 0.84 -13.93 16 19 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 20 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 21 N -0.97 -62.79 13.06 21.65 0.28 -62.50 16 22 Si 0.98 48.28 29.55 68.60 2.03 50.31 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 26 C 0.09 3.19 5.94 86.35 0.51 3.70 16 27 C 0.05 0.85 11.22 83.72 0.94 1.79 16 28 H 0.07 0.00 7.94 -2.39 -0.02 -0.02 16 29 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.05 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.11 0.20 8.07 -2.39 -0.02 0.19 16 32 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.07 0.03 7.94 -2.39 -0.02 0.01 16 35 H 0.25 0.75 8.06 -2.91 -0.02 0.72 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.16 3.84 4.30 -8.79 -0.04 3.80 16 38 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 42 H 0.37 22.59 7.67 -92.70 -0.71 21.88 16 43 H 0.25 15.61 8.31 -92.70 -0.77 14.84 16 44 H 0.09 3.31 7.06 -2.39 -0.02 3.29 16 45 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 46 H 0.20 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -82.31 376.97 2.69 -79.62 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.24 Total: 27.98 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: 8.91 Total: 26.51 kcal Atomic # 7 Polarization: -138.45 SS G_CDS: -6.88 Total: -145.33 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.61 Total: -39.09 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -82.31 2.69 -79.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755006136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.674 kcal (2) G-P(sol) polarization free energy of solvation -82.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds