Wall clock time and date at job start Tue Mar 31 2020 13:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 N 1.46499 * 109.47252 * 120.00156 * 2 1 3 5 5 C 1.34248 * 125.75591 * 274.99880 * 4 2 1 6 6 C 1.38049 * 107.41748 * 179.97438 * 5 4 2 7 7 C 1.47429 * 126.41392 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00203 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99680 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99854 * 175.03939 * 9 7 6 11 11 C 1.52994 * 112.94193 * 301.00918 * 10 9 7 12 12 C 1.52997 * 109.47335 * 304.09263 * 11 10 9 13 13 O 1.42905 * 109.47450 * 184.88759 * 12 11 10 14 14 C 1.53945 * 113.73757 * 72.59902 * 10 9 7 15 15 N 1.47812 * 86.03694 * 90.88548 * 14 10 9 16 16 C 1.36940 * 134.45598 * 204.64814 * 15 14 10 17 17 H 1.07995 * 119.99886 * 179.86273 * 16 15 14 18 18 C 1.38813 * 119.99987 * 359.85347 * 16 15 14 19 19 N 1.31624 * 119.99691 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99905 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47530 * 60.00479 * 20 18 16 22 22 H 1.48506 * 109.47091 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47075 * 300.00303 * 20 18 16 24 24 C 1.47576 * 91.05091 * 24.54505 * 15 14 10 25 25 C 1.41283 * 107.16877 * 0.24399 * 6 5 4 26 26 N 1.30448 * 108.02467 * 359.58613 * 25 6 5 27 27 H 1.09003 * 109.47497 * 59.99374 * 1 2 3 28 28 H 1.08998 * 109.47364 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46652 * 299.99932 * 1 2 3 30 30 H 1.09005 * 109.46470 * 240.00465 * 2 1 3 31 31 H 1.09000 * 109.47421 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47317 * 300.00737 * 3 2 1 33 33 H 1.09006 * 109.47173 * 60.00008 * 3 2 1 34 34 H 1.08001 * 126.29627 * 0.02562 * 5 4 2 35 35 H 0.96994 * 119.99980 * 355.03665 * 9 7 6 36 36 H 1.09008 * 109.47657 * 64.09818 * 11 10 9 37 37 H 1.09006 * 109.47152 * 184.09437 * 11 10 9 38 38 H 1.09003 * 109.47090 * 304.89191 * 12 11 10 39 39 H 1.09003 * 109.46809 * 64.88717 * 12 11 10 40 40 H 0.96701 * 113.99847 * 180.02562 * 13 12 11 41 41 H 1.09007 * 113.76672 * 205.14937 * 14 10 9 42 42 H 1.08996 * 113.77495 * 336.54174 * 14 10 9 43 43 H 0.97006 * 119.99397 * 179.97438 * 19 18 16 44 44 H 1.09003 * 113.77043 * 221.15379 * 24 15 14 45 45 H 1.08999 * 113.77223 * 89.76042 * 24 15 14 46 46 H 1.07998 * 125.98738 * 179.73716 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1904 -0.1364 2.4067 6 6 2.6623 -1.1227 3.2495 7 6 2.9941 -0.9685 4.6776 8 8 2.8579 0.1111 5.2204 9 7 3.4483 -2.0243 5.3817 10 6 3.8808 -1.8474 6.7702 11 6 5.0211 -0.8378 6.9157 12 6 6.1936 -1.2614 6.0287 13 8 7.2996 -0.3839 6.2498 14 6 2.7208 -1.6186 7.7562 15 7 2.7103 -3.0870 7.9251 16 6 1.7652 -4.0019 8.3058 17 1 2.0160 -5.0514 8.3484 18 6 0.4848 -3.5802 8.6371 19 7 0.1792 -2.3010 8.5848 20 14 -0.8042 -4.8281 9.1571 21 1 -0.3376 -5.5454 10.3706 22 1 -2.0793 -4.1277 9.4551 23 1 -1.0206 -5.8033 8.0582 24 6 4.1259 -3.1713 7.5165 25 6 2.7738 -2.3059 2.4855 26 7 2.3836 -2.0395 1.2695 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 3.1301 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.9947 0.8919 2.6727 35 1 3.4889 -2.9011 4.9690 36 1 4.6735 0.1495 6.6115 37 1 5.3460 -0.8040 7.9557 38 1 6.4850 -2.2825 6.2749 39 1 5.8937 -1.2115 4.9819 40 1 8.0801 -0.5934 5.7188 41 1 3.0096 -1.0749 8.6557 42 1 1.8190 -1.2224 7.2894 43 1 -0.7157 -2.0064 8.8160 44 1 4.3439 -4.0126 6.8586 45 1 4.8284 -3.0849 8.3454 46 1 3.1190 -3.2637 2.8457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755337615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:07 Heat of formation + Delta-G solvation = 46.668348 kcal Electronic energy + Delta-G solvation = -28028.070105 eV Core-core repulsion = 24149.584865 eV Total energy + Delta-G solvation = -3878.485240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.39270 -39.61867 -37.39084 -36.48312 -35.94040 -33.33736 -31.90766 -30.65243 -30.45638 -29.70046 -27.71661 -26.98961 -24.97426 -24.18068 -23.18668 -22.25280 -21.17929 -20.24201 -19.82091 -18.57178 -17.79603 -17.17586 -16.60122 -15.76500 -15.59841 -15.18526 -15.03236 -14.94733 -14.59965 -14.26535 -14.10154 -13.76600 -13.55638 -13.46297 -13.11280 -12.94783 -12.71883 -12.56551 -12.45778 -12.35858 -11.78120 -11.58325 -11.55852 -11.41309 -11.11828 -10.97288 -10.91677 -10.78149 -10.54723 -9.99163 -9.83463 -9.72076 -9.58011 -9.48940 -9.13903 -8.76635 -8.63083 -8.23853 -6.83181 -5.69686 -3.03786 1.66037 2.23876 2.32169 3.42116 3.45983 3.48044 3.71451 3.93005 4.16441 4.39826 4.47294 4.52527 4.64825 4.71455 4.79422 5.06746 5.07921 5.16448 5.27102 5.34985 5.37316 5.39513 5.47157 5.47506 5.52179 5.59631 5.70398 5.76650 5.79063 5.91247 6.02927 6.24721 6.37146 6.41321 6.46219 6.56813 6.73237 6.83631 7.02283 7.32779 7.42923 7.57070 7.74974 7.78537 8.04467 8.16016 8.88055 9.08744 9.75853 10.63398 11.46064 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.004247 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.589965 B = 6590.831344 C = 8647.491861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.153 3.847 3 C -0.168 4.168 4 N -0.359 5.359 5 C 0.124 3.876 6 C -0.282 4.282 7 C 0.595 3.405 8 O -0.544 6.544 9 N -0.689 5.689 10 C 0.129 3.871 11 C -0.116 4.116 12 C 0.083 3.917 13 O -0.576 6.576 14 C 0.169 3.831 15 N -0.608 5.608 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.004 4.004 19 N -0.915 5.915 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.119 3.881 25 C 0.081 3.919 26 N -0.302 5.302 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.184 0.816 35 H 0.396 0.604 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.040 0.960 40 H 0.371 0.629 41 H 0.033 0.967 42 H 0.083 0.917 43 H 0.254 0.746 44 H 0.045 0.955 45 H 0.047 0.953 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 4.916 -18.116 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.052 3.948 3 C -0.226 4.226 4 N -0.140 5.140 5 C -0.027 4.027 6 C -0.297 4.297 7 C 0.382 3.618 8 O -0.422 6.422 9 N -0.338 5.338 10 C 0.041 3.959 11 C -0.156 4.156 12 C 0.005 3.995 13 O -0.381 6.381 14 C 0.043 3.957 15 N -0.334 5.334 16 C -0.355 4.355 17 H 0.096 0.904 18 C -0.201 4.201 19 N -0.561 5.561 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.007 4.007 25 C -0.107 4.107 26 N -0.122 5.122 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.201 0.799 35 H 0.230 0.770 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.217 0.783 41 H 0.051 0.949 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.867 5.444 -18.499 20.470 hybrid contribution -0.333 -1.177 0.673 1.396 sum 6.534 4.267 -17.826 19.459 Atomic orbital electron populations 1.22265 0.93323 1.03600 1.03350 1.21345 0.95081 0.92820 0.85591 1.22241 1.02464 0.93874 1.04015 1.48698 1.49296 1.07495 1.08473 1.22823 0.95716 0.99669 0.84480 1.20387 1.18766 0.94445 0.96052 1.17099 0.76332 0.84135 0.84197 1.90745 1.53600 1.26852 1.71048 1.45200 1.65658 1.10632 1.12341 1.22232 0.95371 0.96133 0.82132 1.21717 0.92642 1.01063 1.00169 1.22164 0.86625 0.92052 0.98648 1.86507 1.25104 1.57745 1.68752 1.22583 0.94890 0.85549 0.92656 1.45967 1.04615 1.03199 1.79664 1.18899 0.89330 0.87983 1.39242 0.90391 1.24778 0.97389 0.96090 1.01844 1.69837 1.19895 1.12828 1.53520 0.86252 0.81152 0.80171 0.78444 1.21226 1.21620 1.21174 1.22865 0.89284 0.93469 0.95129 1.24053 0.97363 0.98883 0.90366 1.77114 1.21273 0.92869 1.20913 0.90355 0.91425 0.91534 0.87771 0.91315 0.89800 0.91124 0.79930 0.77030 0.89727 0.90507 0.93945 0.94125 0.78299 0.94909 0.89911 0.93600 0.93697 0.93535 0.79527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.52 37.16 0.35 -0.89 16 2 C 0.15 1.23 3.91 -67.93 -0.27 0.97 16 3 C -0.17 -1.00 8.82 37.16 0.33 -0.67 16 4 N -0.36 -4.28 3.50 -54.32 -0.19 -4.47 16 5 C 0.12 1.64 10.39 -16.56 -0.17 1.47 16 6 C -0.28 -4.30 6.13 -105.07 -0.64 -4.95 16 7 C 0.60 10.87 7.43 -12.52 -0.09 10.78 16 8 O -0.54 -11.68 15.00 5.27 0.08 -11.60 16 9 N -0.69 -11.98 4.68 -50.14 -0.23 -12.22 16 10 C 0.13 2.47 0.61 -134.04 -0.08 2.39 16 11 C -0.12 -2.03 4.76 -26.74 -0.13 -2.16 16 12 C 0.08 1.18 6.78 37.16 0.25 1.43 16 13 O -0.58 -7.98 13.66 -35.23 -0.48 -8.46 16 14 C 0.17 4.18 6.52 -2.84 -0.02 4.16 16 15 N -0.61 -15.43 3.70 -177.51 -0.66 -16.08 16 16 C -0.23 -6.34 10.70 -15.06 -0.16 -6.50 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 19 N -0.91 -27.84 11.39 55.49 0.63 -27.20 16 20 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.12 2.34 7.93 -2.97 -0.02 2.31 16 25 C 0.08 1.09 11.50 -16.98 -0.20 0.90 16 26 N -0.30 -4.14 12.50 30.86 0.39 -3.76 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.44 7.13 -51.93 -0.37 0.06 16 34 H 0.18 2.11 7.23 -52.49 -0.38 1.73 16 35 H 0.40 5.99 7.60 -40.82 -0.31 5.68 16 36 H 0.08 1.65 6.68 -51.92 -0.35 1.31 16 37 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 38 H 0.04 0.54 7.88 -51.93 -0.41 0.13 16 39 H 0.04 0.57 7.84 -51.93 -0.41 0.16 16 40 H 0.37 3.21 9.12 45.56 0.42 3.62 16 41 H 0.03 0.84 8.10 -51.93 -0.42 0.42 16 42 H 0.08 2.37 6.96 -51.93 -0.36 2.01 16 43 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 45 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 46 H 0.19 2.00 7.51 -52.49 -0.39 1.61 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -36.56 381.12 -7.02 -43.57 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.33 Total: 8.07 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -0.95 Total: 9.03 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.06 Total: -63.73 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.40 Total: -20.06 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.56 -7.02 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755337615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.243 kcal (2) G-P(sol) polarization free energy of solvation -36.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds