Wall clock time and date at job start Tue Mar 31 2020 13:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 N 1.46499 * 109.47252 * 120.00156 * 2 1 3 5 5 C 1.34248 * 125.75591 * 274.99880 * 4 2 1 6 6 C 1.38049 * 107.41748 * 179.97438 * 5 4 2 7 7 C 1.47429 * 126.41392 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00203 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99680 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99854 * 175.03939 * 9 7 6 11 11 C 1.52994 * 112.94193 * 301.00918 * 10 9 7 12 12 C 1.52997 * 109.47335 * 304.09263 * 11 10 9 13 13 O 1.42905 * 109.47450 * 184.88759 * 12 11 10 14 14 C 1.53945 * 113.73757 * 72.59902 * 10 9 7 15 15 N 1.47812 * 86.03694 * 90.88548 * 14 10 9 16 16 C 1.36940 * 134.45598 * 204.64814 * 15 14 10 17 17 H 1.07995 * 119.99886 * 179.86273 * 16 15 14 18 18 C 1.38813 * 119.99987 * 359.85347 * 16 15 14 19 19 N 1.31624 * 119.99691 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99905 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47530 * 60.00479 * 20 18 16 22 22 H 1.48506 * 109.47091 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47075 * 300.00303 * 20 18 16 24 24 C 1.47576 * 91.05091 * 24.54505 * 15 14 10 25 25 C 1.41283 * 107.16877 * 0.24399 * 6 5 4 26 26 N 1.30448 * 108.02467 * 359.58613 * 25 6 5 27 27 H 1.09003 * 109.47497 * 59.99374 * 1 2 3 28 28 H 1.08998 * 109.47364 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46652 * 299.99932 * 1 2 3 30 30 H 1.09005 * 109.46470 * 240.00465 * 2 1 3 31 31 H 1.09000 * 109.47421 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47317 * 300.00737 * 3 2 1 33 33 H 1.09006 * 109.47173 * 60.00008 * 3 2 1 34 34 H 1.08001 * 126.29627 * 0.02562 * 5 4 2 35 35 H 0.96994 * 119.99980 * 355.03665 * 9 7 6 36 36 H 1.09008 * 109.47657 * 64.09818 * 11 10 9 37 37 H 1.09006 * 109.47152 * 184.09437 * 11 10 9 38 38 H 1.09003 * 109.47090 * 304.89191 * 12 11 10 39 39 H 1.09003 * 109.46809 * 64.88717 * 12 11 10 40 40 H 0.96701 * 113.99847 * 180.02562 * 13 12 11 41 41 H 1.09007 * 113.76672 * 205.14937 * 14 10 9 42 42 H 1.08996 * 113.77495 * 336.54174 * 14 10 9 43 43 H 0.97006 * 119.99397 * 179.97438 * 19 18 16 44 44 H 1.09003 * 113.77043 * 221.15379 * 24 15 14 45 45 H 1.08999 * 113.77223 * 89.76042 * 24 15 14 46 46 H 1.07998 * 125.98738 * 179.73716 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1904 -0.1364 2.4067 6 6 2.6623 -1.1227 3.2495 7 6 2.9941 -0.9685 4.6776 8 8 2.8579 0.1111 5.2204 9 7 3.4483 -2.0243 5.3817 10 6 3.8808 -1.8474 6.7702 11 6 5.0211 -0.8378 6.9157 12 6 6.1936 -1.2614 6.0287 13 8 7.2996 -0.3839 6.2498 14 6 2.7208 -1.6186 7.7562 15 7 2.7103 -3.0870 7.9251 16 6 1.7652 -4.0019 8.3058 17 1 2.0160 -5.0514 8.3484 18 6 0.4848 -3.5802 8.6371 19 7 0.1792 -2.3010 8.5848 20 14 -0.8042 -4.8281 9.1571 21 1 -0.3376 -5.5454 10.3706 22 1 -2.0793 -4.1277 9.4551 23 1 -1.0206 -5.8033 8.0582 24 6 4.1259 -3.1713 7.5165 25 6 2.7738 -2.3059 2.4855 26 7 2.3836 -2.0395 1.2695 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 3.1301 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.9947 0.8919 2.6727 35 1 3.4889 -2.9011 4.9690 36 1 4.6735 0.1495 6.6115 37 1 5.3460 -0.8040 7.9557 38 1 6.4850 -2.2825 6.2749 39 1 5.8937 -1.2115 4.9819 40 1 8.0801 -0.5934 5.7188 41 1 3.0096 -1.0749 8.6557 42 1 1.8190 -1.2224 7.2894 43 1 -0.7157 -2.0064 8.8160 44 1 4.3439 -4.0126 6.8586 45 1 4.8284 -3.0849 8.3454 46 1 3.1190 -3.2637 2.8457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755337615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:06 Heat of formation + Delta-G solvation = 17.826641 kcal Electronic energy + Delta-G solvation = -28029.320775 eV Core-core repulsion = 24149.584865 eV Total energy + Delta-G solvation = -3879.735910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.44027 -41.15943 -38.93929 -37.64599 -36.70919 -35.08442 -33.69936 -32.16811 -31.44169 -30.77471 -28.89690 -28.25664 -26.74830 -25.53002 -24.50827 -23.31344 -22.80867 -21.43139 -20.88751 -20.06816 -18.92540 -18.70247 -18.22364 -16.95633 -16.90197 -16.51442 -16.45947 -16.06038 -15.86166 -15.65772 -15.36003 -15.13022 -14.98736 -14.77165 -14.43112 -14.11415 -13.84305 -13.80067 -13.24542 -13.21370 -13.10786 -13.03623 -12.92117 -12.73287 -12.43137 -12.39542 -12.33335 -12.30261 -11.94814 -11.78491 -11.63296 -11.25633 -10.98367 -10.82933 -10.56658 -10.55621 -9.95887 -9.59391 -8.89160 -7.85548 -5.20707 0.56928 1.20025 1.36099 1.45018 1.48797 1.54764 2.34132 2.48255 2.58839 3.20019 3.33049 3.42200 3.51135 3.71385 3.77398 3.85748 3.91942 4.06123 4.12933 4.25764 4.36583 4.39781 4.45807 4.56955 4.60543 4.68995 4.72968 4.76953 4.78854 4.81478 4.86125 4.92266 5.05100 5.14765 5.18727 5.22034 5.28553 5.37748 5.43428 5.56157 5.84794 5.91280 5.97078 6.53059 6.79417 6.91784 6.98718 7.48035 7.64243 8.57989 9.30215 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.004247 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.589965 B = 6590.831344 C = 8647.491861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 C -0.163 4.163 4 N -0.351 5.351 5 C 0.129 3.871 6 C -0.310 4.310 7 C 0.593 3.407 8 O -0.586 6.586 9 N -0.683 5.683 10 C 0.155 3.845 11 C -0.111 4.111 12 C 0.094 3.906 13 O -0.593 6.593 14 C 0.161 3.839 15 N -0.633 5.633 16 C -0.229 4.229 17 H 0.092 0.908 18 C -0.069 4.069 19 N -0.955 5.955 20 Si 0.977 3.023 21 H -0.276 1.276 22 H -0.301 1.301 23 H -0.274 1.274 24 C 0.127 3.873 25 C 0.085 3.915 26 N -0.318 5.318 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.195 0.805 35 H 0.409 0.591 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.396 0.604 41 H 0.012 0.988 42 H 0.035 0.965 43 H 0.244 0.756 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.389 3.486 -20.202 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 C -0.221 4.221 4 N -0.130 5.130 5 C -0.024 4.024 6 C -0.325 4.325 7 C 0.382 3.618 8 O -0.467 6.467 9 N -0.333 5.333 10 C 0.067 3.933 11 C -0.150 4.150 12 C 0.016 3.984 13 O -0.402 6.402 14 C 0.035 3.965 15 N -0.359 5.359 16 C -0.358 4.358 17 H 0.110 0.890 18 C -0.262 4.262 19 N -0.604 5.604 20 Si 0.805 3.195 21 H -0.202 1.202 22 H -0.228 1.228 23 H -0.199 1.199 24 C 0.002 3.998 25 C -0.102 4.102 26 N -0.137 5.137 27 H 0.127 0.873 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.212 0.788 35 H 0.245 0.755 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.246 0.754 41 H 0.030 0.970 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 8.350 3.958 -20.646 22.620 hybrid contribution -0.742 -0.664 1.251 1.599 sum 7.608 3.294 -19.395 21.093 Atomic orbital electron populations 1.22255 0.92718 1.02765 1.04377 1.21780 0.95543 0.93877 0.84442 1.22250 1.02170 0.92438 1.05232 1.49083 1.47929 1.06992 1.08997 1.23031 0.94562 0.99956 0.84807 1.20247 1.21349 0.96190 0.94753 1.17530 0.75405 0.83517 0.85316 1.90723 1.55366 1.28431 1.72172 1.45110 1.65462 1.11293 1.11436 1.21766 0.93318 0.96271 0.81943 1.21569 0.93503 0.99080 1.00893 1.21953 0.85662 0.92979 0.97759 1.86438 1.26022 1.58010 1.69687 1.22426 0.95341 0.85400 0.93353 1.46274 1.07040 1.03005 1.79583 1.19402 0.89946 0.89103 1.37319 0.89050 1.25644 0.99775 0.97743 1.03002 1.70086 1.19623 1.15016 1.55631 0.85179 0.77943 0.77885 0.78480 1.20167 1.22777 1.19938 1.23046 0.86403 0.94544 0.95770 1.24381 0.96729 0.99219 0.89882 1.77080 1.21718 0.93915 1.21017 0.87327 0.93133 0.92522 0.86634 0.91732 0.87042 0.91459 0.78819 0.75477 0.92411 0.90784 0.91496 0.93725 0.75424 0.97047 0.94661 0.94717 0.90360 0.91811 0.77232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.52 71.98 0.69 -1.48 16 2 C 0.14 2.05 3.91 44.99 0.18 2.22 16 3 C -0.16 -1.59 8.82 71.98 0.64 -0.96 16 4 N -0.35 -7.94 3.50 -325.75 -1.14 -9.08 16 5 C 0.13 3.38 10.39 84.28 0.88 4.26 16 6 C -0.31 -9.43 6.13 -20.15 -0.12 -9.55 16 7 C 0.59 22.07 7.43 86.66 0.64 22.71 16 8 O -0.59 -26.33 15.00 -4.05 -0.06 -26.39 16 9 N -0.68 -23.52 4.68 -430.79 -2.02 -25.54 16 10 C 0.16 5.93 0.61 5.36 0.00 5.94 16 11 C -0.11 -3.84 4.76 30.59 0.15 -3.69 16 12 C 0.09 2.46 6.78 71.98 0.49 2.95 16 13 O -0.59 -15.03 13.66 -148.98 -2.04 -17.06 16 14 C 0.16 8.34 6.52 86.44 0.56 8.91 16 15 N -0.63 -32.22 3.70 -715.52 -2.65 -34.87 16 16 C -0.23 -12.79 10.70 84.03 0.90 -11.89 16 17 H 0.09 4.73 7.83 -2.91 -0.02 4.70 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 19 N -0.95 -60.64 11.39 21.65 0.25 -60.40 16 20 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 C 0.13 4.75 7.93 86.48 0.69 5.43 16 25 C 0.09 2.19 11.50 85.65 0.99 3.18 16 26 N -0.32 -8.28 12.50 -56.28 -0.70 -8.99 16 27 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.72 7.13 -2.38 -0.02 0.71 16 34 H 0.19 4.49 7.23 -2.91 -0.02 4.47 16 35 H 0.41 11.73 7.60 -92.71 -0.70 11.02 16 36 H 0.06 2.33 6.68 -2.38 -0.02 2.31 16 37 H 0.07 2.57 8.10 -2.38 -0.02 2.55 16 38 H 0.07 1.45 7.88 -2.39 -0.02 1.43 16 39 H 0.04 1.14 7.84 -2.39 -0.02 1.12 16 40 H 0.40 5.63 9.12 -74.06 -0.68 4.95 16 41 H 0.01 0.64 8.10 -2.38 -0.02 0.62 16 42 H 0.03 2.15 6.96 -2.39 -0.02 2.13 16 43 H 0.24 15.25 8.31 -92.70 -0.77 14.48 16 44 H 0.08 2.45 8.08 -2.39 -0.02 2.43 16 45 H 0.06 2.24 8.07 -2.39 -0.02 2.22 16 46 H 0.21 4.07 7.51 -2.91 -0.02 4.05 16 Total: -1.00 -83.01 381.12 0.42 -82.59 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.38 Total: 26.58 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 7.13 Total: 24.48 kcal Atomic # 7 Polarization: -132.61 SS G_CDS: -6.26 Total: -138.87 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -2.10 Total: -43.45 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -83.01 0.42 -82.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755337615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.412 kcal (2) G-P(sol) polarization free energy of solvation -83.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds