Wall clock time and date at job start Tue Mar 31 2020 14:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46510 * 109.46845 * 2 1 4 4 C 1.34777 * 119.99724 * 274.74764 * 3 2 1 5 5 O 1.21491 * 119.99635 * 183.05518 * 4 3 2 6 6 C 1.48333 * 120.00159 * 3.05150 * 4 3 2 7 7 C 1.42266 * 126.93594 * 185.19159 * 6 4 3 8 8 C 1.35310 * 103.92158 * 179.88796 * 7 6 4 9 9 C 1.50705 * 126.66884 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.46827 * 90.31891 * 9 8 7 11 11 C 1.46900 * 110.99755 * 170.00209 * 10 9 8 12 12 C 1.46900 * 111.00340 * 293.95644 * 10 9 8 13 13 O 1.34015 * 106.67036 * 0.36931 * 8 7 6 14 14 N 1.20911 * 111.84188 * 359.75073 * 13 8 7 15 15 C 1.46500 * 119.99848 * 94.74710 * 3 2 1 16 16 C 1.53490 * 114.20813 * 231.72520 * 15 3 2 17 17 N 1.47061 * 87.98679 * 220.15340 * 16 15 3 18 18 C 1.36941 * 136.05447 * 207.09112 * 17 16 15 19 19 H 1.08003 * 120.00175 * 354.69302 * 18 17 16 20 20 C 1.38819 * 119.99844 * 174.69775 * 18 17 16 21 21 N 1.31616 * 119.99540 * 183.79495 * 20 18 17 22 22 Si 1.86793 * 119.99853 * 3.79924 * 20 18 17 23 23 H 1.48506 * 109.47108 * 174.24911 * 22 20 18 24 24 H 1.48507 * 109.47313 * 294.24561 * 22 20 18 25 25 H 1.48504 * 109.47639 * 54.24716 * 22 20 18 26 26 C 1.47069 * 87.88673 * 27.34157 * 17 16 15 27 27 H 1.09002 * 109.47234 * 300.00431 * 1 2 3 28 28 H 1.09002 * 109.47423 * 60.00112 * 1 2 3 29 29 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47380 * 240.00265 * 2 1 3 31 31 H 1.08991 * 109.47020 * 119.99671 * 2 1 3 32 32 H 1.08003 * 128.03894 * 0.02562 * 7 6 4 33 33 H 1.08996 * 109.47377 * 210.32183 * 9 8 7 34 34 H 1.09004 * 109.47100 * 330.32097 * 9 8 7 35 35 H 1.09007 * 109.47346 * 59.99885 * 11 10 9 36 36 H 1.08999 * 109.47425 * 180.02562 * 11 10 9 37 37 H 1.09006 * 109.47161 * 300.00410 * 11 10 9 38 38 H 1.08997 * 109.47155 * 59.99796 * 12 10 9 39 39 H 1.08991 * 109.47086 * 180.02562 * 12 10 9 40 40 H 1.09003 * 109.46703 * 300.00093 * 12 10 9 41 41 H 1.09001 * 113.27959 * 4.79546 * 15 3 2 42 42 H 1.09004 * 113.46934 * 105.36748 * 16 15 3 43 43 H 1.09005 * 113.46521 * 334.93151 * 16 15 3 44 44 H 0.96995 * 120.00428 * 5.01572 * 21 20 18 45 45 H 1.09003 * 113.46455 * 87.43977 * 26 17 16 46 46 H 1.08995 * 113.46578 * 217.87761 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1518 2.0488 -1.1632 5 8 2.6089 3.1745 -1.1686 6 6 1.7407 1.4092 -2.4368 7 6 1.9093 1.9316 -3.7493 8 6 1.3778 0.9788 -4.5497 9 6 1.2900 1.0132 -6.0538 10 7 2.4948 0.4000 -6.6287 11 6 2.3440 0.1998 -8.0761 12 6 3.6881 1.2030 -6.3298 13 8 0.9377 0.0020 -3.7446 14 7 1.1441 0.2519 -2.5798 15 6 2.3614 2.0369 1.2644 16 6 1.6927 3.4036 1.4665 17 7 2.9610 3.8819 2.0369 18 6 3.3371 4.8436 2.9362 19 1 2.6008 5.5225 3.3405 20 6 4.6649 4.9462 3.3281 21 7 5.0139 5.8207 4.2477 22 14 5.9561 3.8431 2.5501 23 1 7.3029 4.2407 3.0333 24 1 5.6924 2.4308 2.9262 25 1 5.8997 3.9807 1.0726 26 6 3.6481 2.8770 1.2117 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 2.3592 2.8696 -4.0395 33 1 0.4096 0.4590 -6.3792 34 1 1.2130 2.0473 -6.3897 35 1 2.1763 1.1618 -8.5606 36 1 3.2498 -0.2559 -8.4762 37 1 1.4938 -0.4555 -8.2657 38 1 3.8150 1.2770 -5.2498 39 1 4.5654 0.7267 -6.7673 40 1 3.5690 2.2013 -6.7509 41 1 2.2919 1.3735 2.1264 42 1 0.8734 3.3840 2.1852 43 1 1.4232 3.8973 0.5327 44 1 4.3349 6.3422 4.7036 45 1 3.8941 3.2319 0.2108 46 1 4.4949 2.4088 1.7134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950690409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:03 Heat of formation + Delta-G solvation = 133.157040 kcal Electronic energy + Delta-G solvation = -28125.656904 eV Core-core repulsion = 24250.922095 eV Total energy + Delta-G solvation = -3874.734809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.23745 -40.37431 -38.06527 -37.43765 -35.74411 -33.98519 -32.63396 -32.19143 -30.28305 -28.11363 -27.79227 -27.76646 -25.37034 -25.09314 -23.31910 -23.03627 -22.85867 -21.87673 -20.00784 -18.66769 -17.99609 -17.59946 -17.44564 -16.77829 -16.08389 -15.79576 -15.76330 -15.42610 -15.12120 -14.83880 -14.29208 -13.92391 -13.84551 -13.52057 -13.48865 -13.10832 -13.07369 -12.88318 -12.49796 -12.35037 -12.24151 -12.07702 -12.00570 -11.71171 -11.52343 -11.48025 -11.20748 -10.98035 -10.63819 -10.46190 -10.25898 -9.78818 -9.71561 -9.23485 -9.02111 -8.93685 -8.81683 -8.29548 -7.01009 -6.23419 -3.14159 0.97572 1.46861 2.64872 2.88720 3.18378 3.45771 3.50798 3.55753 3.73575 3.81175 4.17170 4.54549 4.64776 4.67245 4.74468 4.83828 4.90685 4.92386 4.96328 5.09332 5.09669 5.11249 5.15324 5.26317 5.37540 5.39134 5.44265 5.48410 5.56569 5.60845 5.67574 5.75838 5.86748 6.05501 6.22443 6.34222 6.35041 6.40040 6.41578 6.42011 6.60895 7.16120 7.22897 7.45889 7.84367 8.21496 8.30402 9.05503 9.57769 10.45191 11.28660 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.003268 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.465116 B = 8565.114137 C = 9493.458678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.585 5.585 4 C 0.588 3.412 5 O -0.500 6.500 6 C -0.017 4.017 7 C -0.175 4.175 8 C -0.026 4.026 9 C 0.133 3.867 10 N -0.545 5.545 11 C 0.025 3.975 12 C 0.015 3.985 13 O 0.123 5.877 14 N -0.322 5.322 15 C 0.098 3.902 16 C 0.118 3.882 17 N -0.620 5.620 18 C -0.295 4.295 19 H 0.082 0.918 20 C -0.025 4.025 21 N -0.937 5.937 22 Si 1.074 2.926 23 H -0.296 1.296 24 H -0.293 1.293 25 H -0.288 1.288 26 C 0.077 3.923 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.178 0.822 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.119 0.881 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.260 0.740 45 H 0.079 0.921 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.577 -16.163 -24.431 30.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.318 5.318 4 C 0.373 3.627 5 O -0.373 6.373 6 C -0.176 4.176 7 C -0.198 4.198 8 C -0.090 4.090 9 C 0.005 3.995 10 N -0.269 5.269 11 C -0.123 4.123 12 C -0.133 4.133 13 O 0.049 5.951 14 N -0.024 5.024 15 C -0.006 4.006 16 C -0.010 4.010 17 N -0.348 5.348 18 C -0.421 4.421 19 H 0.100 0.900 20 C -0.223 4.223 21 N -0.580 5.580 22 Si 0.907 3.093 23 H -0.224 1.224 24 H -0.222 1.222 25 H -0.215 1.215 26 C -0.049 4.049 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.195 0.805 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.136 0.864 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.958 -17.015 -23.135 29.800 hybrid contribution -1.536 1.783 -0.682 2.450 sum -9.494 -15.233 -23.817 29.823 Atomic orbital electron populations 1.22100 0.95537 1.02050 1.02117 1.21790 0.95035 0.81941 1.03420 1.47915 1.63708 1.14136 1.06026 1.16985 0.79145 0.85211 0.81353 1.90834 1.43314 1.17668 1.85515 1.23610 1.03789 0.93331 0.96852 1.22449 1.04742 1.02532 0.90064 1.24093 1.00828 0.88766 0.95339 1.20502 0.94871 1.00081 0.84068 1.61922 1.02525 1.49121 1.13369 1.22409 1.03255 1.00504 0.86093 1.22550 0.92521 0.95430 1.02840 1.84799 1.59188 1.39698 1.11452 1.74409 1.15267 1.15977 0.96784 1.23752 0.99380 0.93610 0.83818 1.22666 0.91054 0.90425 0.96873 1.45771 1.02246 1.41079 1.45752 1.20141 0.96125 1.09514 1.16337 0.90018 1.25683 0.96654 1.00941 0.99070 1.70919 1.35487 1.25605 1.25955 0.83666 0.75740 0.74294 0.75577 1.22390 1.22220 1.21469 1.23496 0.94273 0.89704 0.97400 0.92512 0.92475 0.91651 0.89466 0.90115 0.80482 0.87963 0.90832 0.95156 0.90761 0.90867 0.90780 0.90808 0.94936 0.86355 0.93942 0.93176 0.93032 0.90331 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.68 37.16 0.36 -1.43 16 2 C 0.10 1.26 5.72 -4.04 -0.02 1.23 16 3 N -0.59 -9.47 2.77 -166.66 -0.46 -9.94 16 4 C 0.59 10.14 7.15 -12.11 -0.09 10.05 16 5 O -0.50 -10.43 12.49 5.37 0.07 -10.36 16 6 C -0.02 -0.24 6.65 -82.53 -0.55 -0.79 16 7 C -0.17 -1.97 9.60 -39.08 -0.38 -2.34 16 8 C -0.03 -0.24 6.33 -35.35 -0.22 -0.47 16 9 C 0.13 0.81 5.53 -4.97 -0.03 0.78 16 10 N -0.54 -3.68 5.01 -252.72 -1.27 -4.95 16 11 C 0.03 0.11 9.57 60.06 0.57 0.69 16 12 C 0.01 0.10 9.29 60.06 0.56 0.66 16 13 O 0.12 1.31 11.18 17.25 0.19 1.50 16 14 N -0.32 -3.97 7.16 33.29 0.24 -3.73 16 15 C 0.10 1.87 4.80 -67.68 -0.32 1.54 16 16 C 0.12 2.59 8.10 -8.51 -0.07 2.52 16 17 N -0.62 -16.62 3.69 -184.62 -0.68 -17.30 16 18 C -0.29 -9.01 11.09 -15.05 -0.17 -9.18 16 19 H 0.08 2.61 8.05 -52.48 -0.42 2.18 16 20 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 21 N -0.94 -30.70 13.70 55.49 0.76 -29.94 16 22 Si 1.07 28.64 25.09 -169.99 -4.27 24.38 16 23 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 24 H -0.29 -7.30 6.36 56.52 0.36 -6.94 16 25 H -0.29 -7.47 6.66 56.52 0.38 -7.10 16 26 C 0.08 1.82 5.29 -8.37 -0.04 1.78 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.70 6.58 -51.93 -0.34 0.36 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.07 5.73 -51.93 -0.30 0.77 16 31 H 0.08 0.88 7.90 -51.93 -0.41 0.47 16 32 H 0.18 1.83 8.06 -52.48 -0.42 1.41 16 33 H 0.10 0.45 8.06 -51.93 -0.42 0.03 16 34 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.03 0.12 8.14 -51.93 -0.42 -0.31 16 36 H 0.07 0.31 8.12 -51.93 -0.42 -0.12 16 37 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 38 H 0.07 0.63 6.35 -51.93 -0.33 0.30 16 39 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 40 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 41 H 0.12 2.04 7.94 -51.93 -0.41 1.63 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.05 1.16 6.36 -51.93 -0.33 0.83 16 44 H 0.26 8.38 8.73 -40.82 -0.36 8.02 16 45 H 0.08 1.97 5.27 -51.93 -0.27 1.70 16 46 H 0.05 1.15 4.01 -51.93 -0.21 0.95 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -36.22 361.74 -7.34 -43.57 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.89 Total: -2.84 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.49 Total: 4.16 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -1.41 Total: -65.85 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.26 Total: -8.86 kcal Atomic # 14 Polarization: 28.64 SS G_CDS: -4.27 Total: 24.38 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.22 -7.34 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950690409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.722 kcal (2) G-P(sol) polarization free energy of solvation -36.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds