Wall clock time and date at job start Tue Mar 31 2020 14:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46510 * 109.46845 * 2 1 4 4 C 1.34777 * 119.99724 * 274.74764 * 3 2 1 5 5 O 1.21491 * 119.99635 * 183.05518 * 4 3 2 6 6 C 1.48333 * 120.00159 * 3.05150 * 4 3 2 7 7 C 1.42266 * 126.93594 * 185.19159 * 6 4 3 8 8 C 1.35310 * 103.92158 * 179.88796 * 7 6 4 9 9 C 1.50705 * 126.66884 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.46827 * 90.31891 * 9 8 7 11 11 C 1.46900 * 110.99755 * 170.00209 * 10 9 8 12 12 C 1.46900 * 111.00340 * 293.95644 * 10 9 8 13 13 O 1.34015 * 106.67036 * 0.36931 * 8 7 6 14 14 N 1.20911 * 111.84188 * 359.75073 * 13 8 7 15 15 C 1.46500 * 119.99848 * 94.74710 * 3 2 1 16 16 C 1.53490 * 114.20813 * 231.72520 * 15 3 2 17 17 N 1.47061 * 87.98679 * 220.15340 * 16 15 3 18 18 C 1.36941 * 136.05447 * 207.09112 * 17 16 15 19 19 H 1.08003 * 120.00175 * 354.69302 * 18 17 16 20 20 C 1.38819 * 119.99844 * 174.69775 * 18 17 16 21 21 N 1.31616 * 119.99540 * 183.79495 * 20 18 17 22 22 Si 1.86793 * 119.99853 * 3.79924 * 20 18 17 23 23 H 1.48506 * 109.47108 * 174.24911 * 22 20 18 24 24 H 1.48507 * 109.47313 * 294.24561 * 22 20 18 25 25 H 1.48504 * 109.47639 * 54.24716 * 22 20 18 26 26 C 1.47069 * 87.88673 * 27.34157 * 17 16 15 27 27 H 1.09002 * 109.47234 * 300.00431 * 1 2 3 28 28 H 1.09002 * 109.47423 * 60.00112 * 1 2 3 29 29 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47380 * 240.00265 * 2 1 3 31 31 H 1.08991 * 109.47020 * 119.99671 * 2 1 3 32 32 H 1.08003 * 128.03894 * 0.02562 * 7 6 4 33 33 H 1.08996 * 109.47377 * 210.32183 * 9 8 7 34 34 H 1.09004 * 109.47100 * 330.32097 * 9 8 7 35 35 H 1.09007 * 109.47346 * 59.99885 * 11 10 9 36 36 H 1.08999 * 109.47425 * 180.02562 * 11 10 9 37 37 H 1.09006 * 109.47161 * 300.00410 * 11 10 9 38 38 H 1.08997 * 109.47155 * 59.99796 * 12 10 9 39 39 H 1.08991 * 109.47086 * 180.02562 * 12 10 9 40 40 H 1.09003 * 109.46703 * 300.00093 * 12 10 9 41 41 H 1.09001 * 113.27959 * 4.79546 * 15 3 2 42 42 H 1.09004 * 113.46934 * 105.36748 * 16 15 3 43 43 H 1.09005 * 113.46521 * 334.93151 * 16 15 3 44 44 H 0.96995 * 120.00428 * 5.01572 * 21 20 18 45 45 H 1.09003 * 113.46455 * 87.43977 * 26 17 16 46 46 H 1.08995 * 113.46578 * 217.87761 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1518 2.0488 -1.1632 5 8 2.6089 3.1745 -1.1686 6 6 1.7407 1.4092 -2.4368 7 6 1.9093 1.9316 -3.7493 8 6 1.3778 0.9788 -4.5497 9 6 1.2900 1.0132 -6.0538 10 7 2.4948 0.4000 -6.6287 11 6 2.3440 0.1998 -8.0761 12 6 3.6881 1.2030 -6.3298 13 8 0.9377 0.0020 -3.7446 14 7 1.1441 0.2519 -2.5798 15 6 2.3614 2.0369 1.2644 16 6 1.6927 3.4036 1.4665 17 7 2.9610 3.8819 2.0369 18 6 3.3371 4.8436 2.9362 19 1 2.6008 5.5225 3.3405 20 6 4.6649 4.9462 3.3281 21 7 5.0139 5.8207 4.2477 22 14 5.9561 3.8431 2.5501 23 1 7.3029 4.2407 3.0333 24 1 5.6924 2.4308 2.9262 25 1 5.8997 3.9807 1.0726 26 6 3.6481 2.8770 1.2117 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 2.3592 2.8696 -4.0395 33 1 0.4096 0.4590 -6.3792 34 1 1.2130 2.0473 -6.3897 35 1 2.1763 1.1618 -8.5606 36 1 3.2498 -0.2559 -8.4762 37 1 1.4938 -0.4555 -8.2657 38 1 3.8150 1.2770 -5.2498 39 1 4.5654 0.7267 -6.7673 40 1 3.5690 2.2013 -6.7509 41 1 2.2919 1.3735 2.1264 42 1 0.8734 3.3840 2.1852 43 1 1.4232 3.8973 0.5327 44 1 4.3349 6.3422 4.7036 45 1 3.8941 3.2319 0.2108 46 1 4.4949 2.4088 1.7134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950690409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:02 Heat of formation + Delta-G solvation = 106.315631 kcal Electronic energy + Delta-G solvation = -28126.820835 eV Core-core repulsion = 24250.922095 eV Total energy + Delta-G solvation = -3875.898740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.16260 -41.85904 -39.12522 -38.54819 -37.03272 -35.06057 -34.48087 -33.34571 -31.52465 -29.67471 -28.59997 -28.29298 -27.14523 -26.54518 -24.50564 -24.21460 -23.73461 -22.80103 -21.82128 -19.86303 -19.64510 -18.88912 -18.55519 -18.06723 -17.49302 -16.99206 -16.64638 -16.25084 -16.21771 -15.89025 -15.57726 -15.50173 -15.17770 -14.87365 -14.73825 -14.52271 -14.07265 -13.91577 -13.55937 -13.29823 -13.26691 -13.12796 -12.85151 -12.77417 -12.70386 -12.58644 -12.54598 -12.35154 -12.26121 -11.97919 -11.52747 -11.46518 -11.19541 -11.09299 -10.96375 -10.55615 -9.75757 -9.38798 -9.20889 -8.69568 -5.52783 0.01011 0.56290 1.31241 1.43885 1.55408 1.64008 1.94733 1.95407 2.47374 2.73004 2.99169 3.03550 3.18029 3.36618 3.46964 3.84960 3.88614 4.03594 4.05949 4.08911 4.24908 4.30914 4.35769 4.43491 4.48880 4.51538 4.53944 4.59020 4.63810 4.72501 4.75195 4.77137 4.77767 4.84729 4.98307 5.03607 5.03989 5.09892 5.12452 5.33833 5.60713 5.88278 5.90377 5.99710 6.16691 6.64326 6.81203 7.02824 7.25444 8.20657 8.85023 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.003268 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.465116 B = 8565.114137 C = 9493.458678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.098 3.902 3 N -0.583 5.583 4 C 0.585 3.415 5 O -0.546 6.546 6 C -0.041 4.041 7 C -0.187 4.187 8 C -0.003 4.003 9 C 0.132 3.868 10 N -0.559 5.559 11 C 0.025 3.975 12 C 0.015 3.985 13 O 0.134 5.866 14 N -0.319 5.319 15 C 0.132 3.868 16 C 0.116 3.884 17 N -0.649 5.649 18 C -0.289 4.289 19 H 0.052 0.948 20 C -0.080 4.080 21 N -0.967 5.967 22 Si 1.112 2.888 23 H -0.298 1.298 24 H -0.261 1.261 25 H -0.283 1.283 26 C 0.070 3.930 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.180 0.820 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.148 0.852 42 H 0.055 0.945 43 H 0.038 0.962 44 H 0.248 0.752 45 H 0.065 0.935 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.550 -19.474 -26.831 34.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 N -0.315 5.315 4 C 0.372 3.628 5 O -0.423 6.423 6 C -0.198 4.198 7 C -0.210 4.210 8 C -0.067 4.067 9 C 0.004 3.996 10 N -0.284 5.284 11 C -0.122 4.122 12 C -0.133 4.133 13 O 0.057 5.943 14 N -0.019 5.019 15 C 0.027 3.973 16 C -0.011 4.011 17 N -0.377 5.377 18 C -0.416 4.416 19 H 0.070 0.930 20 C -0.272 4.272 21 N -0.612 5.612 22 Si 0.939 3.061 23 H -0.226 1.226 24 H -0.187 1.187 25 H -0.210 1.210 26 C -0.056 4.056 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.198 0.802 33 H 0.144 0.856 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.166 0.834 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.990 -20.391 -25.546 33.900 hybrid contribution -1.375 2.804 -0.095 3.125 sum -10.365 -17.587 -25.641 32.775 Atomic orbital electron populations 1.22047 0.94436 1.03412 1.01250 1.22069 0.95855 0.79592 1.04789 1.47937 1.63400 1.15455 1.04712 1.17416 0.78139 0.84719 0.82521 1.90804 1.45367 1.19707 1.86385 1.23249 1.05879 0.94531 0.96172 1.22548 1.05649 1.03392 0.89450 1.24561 0.98573 0.87119 0.96419 1.20744 0.95599 1.01622 0.81612 1.61910 1.02427 1.49174 1.14917 1.22461 1.03906 1.01245 0.84566 1.22511 0.93130 0.96078 1.01582 1.84778 1.58547 1.39836 1.11159 1.74388 1.14749 1.15153 0.97624 1.23238 0.95180 0.92827 0.86026 1.22751 0.90073 0.92099 0.96160 1.45882 1.05125 1.40872 1.45869 1.20030 0.95623 1.09560 1.16408 0.92990 1.26962 0.99002 1.01925 0.99324 1.71006 1.35257 1.27233 1.27739 0.83197 0.73334 0.74569 0.74979 1.22574 1.18709 1.21007 1.23582 0.96323 0.89736 0.95921 0.92904 0.93800 0.89133 0.89006 0.87843 0.80242 0.85589 0.89184 0.94314 0.90624 0.89673 0.92748 0.90416 0.94218 0.83406 0.92701 0.94390 0.94323 0.91733 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.68 71.98 0.70 -2.28 16 2 C 0.10 2.14 5.72 86.38 0.49 2.63 16 3 N -0.58 -17.85 2.77 -799.49 -2.21 -20.06 16 4 C 0.58 19.88 7.15 86.93 0.62 20.50 16 5 O -0.55 -23.20 12.49 -3.69 -0.05 -23.24 16 6 C -0.04 -1.10 6.65 42.96 0.29 -0.82 16 7 C -0.19 -4.02 9.60 22.60 0.22 -3.80 16 8 C 0.00 -0.05 6.33 25.01 0.16 0.11 16 9 C 0.13 1.19 5.53 85.56 0.47 1.67 16 10 N -0.56 -6.06 5.01 -953.45 -4.78 -10.83 16 11 C 0.03 0.15 9.57 127.69 1.22 1.37 16 12 C 0.02 0.18 9.29 127.69 1.19 1.37 16 13 O 0.13 2.52 11.18 71.88 0.80 3.32 16 14 N -0.32 -7.20 7.16 -49.52 -0.35 -7.56 16 15 C 0.13 4.78 4.80 45.55 0.22 5.00 16 16 C 0.12 5.08 8.10 83.18 0.67 5.76 16 17 N -0.65 -34.95 3.69 -738.01 -2.72 -37.67 16 18 C -0.29 -18.12 11.09 84.03 0.93 -17.19 16 19 H 0.05 3.48 8.05 -2.91 -0.02 3.45 16 20 C -0.08 -5.10 5.50 84.86 0.47 -4.63 16 21 N -0.97 -65.19 13.70 21.65 0.30 -64.90 16 22 Si 1.11 58.06 25.09 68.60 1.72 59.79 16 23 H -0.30 -15.50 7.11 99.48 0.71 -14.80 16 24 H -0.26 -12.12 6.36 99.48 0.63 -11.49 16 25 H -0.28 -14.46 6.66 99.48 0.66 -13.79 16 26 C 0.07 3.24 5.29 83.27 0.44 3.68 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 0.97 6.58 -2.39 -0.02 0.96 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.97 5.73 -2.39 -0.01 1.96 16 31 H 0.10 1.82 7.90 -2.39 -0.02 1.80 16 32 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 33 H 0.13 0.59 8.06 -2.39 -0.02 0.57 16 34 H 0.09 0.58 8.12 -2.38 -0.02 0.56 16 35 H 0.04 0.18 8.14 -2.38 -0.02 0.16 16 36 H 0.07 0.44 8.12 -2.39 -0.02 0.42 16 37 H 0.08 0.31 8.12 -2.38 -0.02 0.29 16 38 H 0.05 0.88 6.35 -2.39 -0.02 0.86 16 39 H 0.08 0.85 8.12 -2.39 -0.02 0.84 16 40 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.15 4.56 7.94 -2.39 -0.02 4.54 16 42 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 43 H 0.04 1.79 6.36 -2.38 -0.02 1.77 16 44 H 0.25 16.68 8.73 -92.71 -0.81 15.87 16 45 H 0.07 3.27 5.27 -2.39 -0.01 3.25 16 46 H 0.05 2.23 4.01 -2.39 -0.01 2.22 16 Total: -1.00 -81.34 361.74 1.63 -79.71 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.83 Total: 8.07 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 8.08 Total: 13.37 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -9.77 Total: -141.02 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.76 Total: -19.92 kcal Atomic # 14 Polarization: 58.06 SS G_CDS: 1.72 Total: 59.79 kcal Total: -81.34 1.63 -79.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950690409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.027 kcal (2) G-P(sol) polarization free energy of solvation -81.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds