Wall clock time and date at job start Tue Mar 31 2020 13:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46984 * 2 1 4 4 C 1.34257 * 125.74922 * 125.00263 * 3 2 1 5 5 C 1.38045 * 107.41601 * 179.97438 * 4 3 2 6 6 C 1.47435 * 126.41433 * 179.73741 * 5 4 3 7 7 O 1.21600 * 119.99774 * 180.02562 * 6 5 4 8 8 N 1.34767 * 119.99916 * 0.02698 * 6 5 4 9 9 C 1.46503 * 119.99987 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47186 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.68276 * 59.16137 * 10 9 8 12 12 C 1.53301 * 109.68121 * 179.68040 * 10 9 8 13 13 O 1.42959 * 109.22314 * 172.02406 * 12 10 9 14 14 C 1.42969 * 114.16723 * 297.42135 * 13 12 10 15 15 C 1.53298 * 109.22429 * 62.57886 * 14 13 12 16 16 N 1.47154 * 109.68391 * 298.64393 * 10 9 8 17 17 C 1.36940 * 120.97830 * 9.71219 * 16 10 9 18 18 H 1.08005 * 120.00192 * 328.47032 * 17 16 10 19 19 C 1.38813 * 120.00009 * 148.46998 * 17 16 10 20 20 N 1.31616 * 119.99835 * 349.23134 * 19 17 16 21 21 Si 1.86792 * 120.00175 * 169.22757 * 19 17 16 22 22 H 1.48507 * 109.47050 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47282 * 120.00285 * 21 19 17 24 24 H 1.48503 * 109.47226 * 240.00450 * 21 19 17 25 25 C 1.41287 * 107.17194 * 0.02562 * 5 4 3 26 26 C 1.50699 * 125.99307 * 179.97438 * 25 5 4 27 27 N 1.30452 * 108.02354 * 359.97438 * 25 5 4 28 28 H 1.08999 * 109.47174 * 299.99687 * 1 2 3 29 29 H 1.08997 * 109.47409 * 59.99405 * 1 2 3 30 30 H 1.09000 * 109.47339 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46716 * 240.00559 * 2 1 3 32 32 H 1.08997 * 109.47409 * 120.00595 * 2 1 3 33 33 H 1.07995 * 126.29571 * 359.97438 * 4 3 2 34 34 H 0.97005 * 120.00483 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46803 * 299.99691 * 9 8 6 36 36 H 1.08997 * 109.47491 * 59.99702 * 9 8 6 37 37 H 1.08999 * 109.51391 * 291.94737 * 12 10 9 38 38 H 1.09002 * 109.50900 * 52.04898 * 12 10 9 39 39 H 1.08994 * 109.50968 * 182.50612 * 14 13 12 40 40 H 1.08995 * 109.51115 * 302.65453 * 14 13 12 41 41 H 1.09005 * 109.67859 * 67.41886 * 15 14 13 42 42 H 1.08995 * 109.67929 * 187.97665 * 15 14 13 43 43 H 0.96998 * 120.00432 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47167 * 89.99244 * 26 25 5 45 45 H 1.08995 * 109.47341 * 210.00045 * 26 25 5 46 46 H 1.09001 * 109.46543 * 329.99929 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0714 3.2308 0.5365 6 6 3.9289 4.2046 1.2365 7 8 4.0222 5.3429 0.8191 8 7 4.6093 3.8332 2.3390 9 6 5.4609 4.8011 3.0349 10 6 6.1147 4.1286 4.2437 11 1 6.7096 3.2773 3.9130 12 6 7.0134 5.1352 4.9711 13 8 7.4710 4.5581 6.1964 14 6 6.4275 4.2494 7.1236 15 6 5.4988 3.1975 6.5065 16 7 5.0748 3.6727 5.1798 17 6 3.7517 3.6916 4.8273 18 1 3.3841 4.4482 4.1499 19 6 2.8830 2.7383 5.3406 20 7 3.3580 1.6971 5.9906 21 14 1.0397 2.9333 5.1090 22 1 0.7654 4.1794 4.3491 23 1 0.5093 1.7682 4.3565 24 1 0.3791 3.0073 6.4370 25 6 2.2977 3.4739 -0.6204 26 6 2.2058 4.7804 -1.3659 27 7 1.6769 2.3693 -0.9303 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.3134 1.4023 1.7343 34 1 4.5346 2.9253 2.6722 35 1 6.2349 5.1583 2.3557 36 1 4.8552 5.6428 3.3705 37 1 7.8692 5.3802 4.3421 38 1 6.4467 6.0417 5.1840 39 1 6.8619 3.8571 8.0431 40 1 5.8585 5.1523 7.3452 41 1 6.0317 2.2521 6.4041 42 1 4.6252 3.0600 7.1437 43 1 2.7511 1.0308 6.3489 44 1 2.9772 4.8148 -2.1352 45 1 1.2240 4.8646 -1.8318 46 1 2.3497 5.6067 -0.6698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051143598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:33 Heat of formation + Delta-G solvation = 18.994724 kcal Electronic energy + Delta-G solvation = -28697.498218 eV Core-core repulsion = 24817.812960 eV Total energy + Delta-G solvation = -3879.685258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18352 -38.98912 -38.08598 -35.32885 -34.65958 -33.55963 -31.82789 -31.16088 -30.53223 -29.63849 -27.64492 -27.18665 -25.44081 -23.51268 -23.44007 -22.11531 -21.53444 -19.83159 -19.75578 -19.15037 -17.49493 -16.60997 -15.88694 -15.85306 -15.58644 -15.48805 -14.79054 -14.62775 -14.39930 -14.12680 -13.96425 -13.82892 -13.56408 -13.37050 -13.03579 -12.84732 -12.69934 -12.60327 -12.30997 -12.05486 -11.83158 -11.72036 -11.55478 -11.45268 -11.08795 -10.93731 -10.74798 -10.57872 -10.41785 -10.26559 -10.07504 -9.67818 -9.34106 -9.14586 -8.95830 -8.70816 -8.48390 -8.10736 -6.75816 -5.94888 -3.44445 1.79722 2.45348 2.48039 3.21572 3.32418 3.39205 3.89363 4.04923 4.31213 4.39705 4.53002 4.81719 4.89285 4.94544 5.07361 5.13390 5.22690 5.31674 5.48861 5.61325 5.63972 5.65812 5.73934 5.78112 5.87941 5.89362 5.95945 6.02537 6.10153 6.14717 6.16972 6.24497 6.27027 6.31883 6.51752 6.75701 6.79996 6.99520 7.04892 7.19964 7.45408 7.69302 7.79616 7.85363 8.25170 8.34235 8.95861 9.02664 9.62422 10.21854 11.11302 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.004856 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.234805 B = 5764.609046 C = 7062.539788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 N -0.362 5.362 4 C 0.107 3.893 5 C -0.282 4.282 6 C 0.589 3.411 7 O -0.565 6.565 8 N -0.695 5.695 9 C 0.138 3.862 10 C 0.125 3.875 11 H 0.041 0.959 12 C 0.056 3.944 13 O -0.393 6.393 14 C 0.035 3.965 15 C 0.144 3.856 16 N -0.591 5.591 17 C -0.249 4.249 18 H 0.075 0.925 19 C 0.009 3.991 20 N -0.901 5.901 21 Si 0.891 3.109 22 H -0.275 1.275 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.127 3.873 26 C -0.073 4.073 27 N -0.308 5.308 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.185 0.815 34 H 0.410 0.590 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.254 0.746 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -2.251 -8.014 8.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.141 5.141 4 C -0.044 4.044 5 C -0.297 4.297 6 C 0.376 3.624 7 O -0.446 6.446 8 N -0.346 5.346 9 C 0.014 3.986 10 C 0.018 3.982 11 H 0.059 0.941 12 C -0.023 4.023 13 O -0.311 6.311 14 C -0.043 4.043 15 C 0.019 3.981 16 N -0.317 5.317 17 C -0.378 4.378 18 H 0.093 0.907 19 C -0.190 4.190 20 N -0.545 5.545 21 Si 0.721 3.279 22 H -0.200 1.200 23 H -0.217 1.217 24 H -0.215 1.215 25 C -0.041 4.041 26 C -0.132 4.132 27 N -0.130 5.130 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.202 0.798 34 H 0.248 0.752 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.574 -2.359 -8.990 9.312 hybrid contribution -0.885 -0.320 0.935 1.326 sum -1.459 -2.678 -8.055 8.613 Atomic orbital electron populations 1.22051 0.93705 1.02839 1.03750 1.21776 0.96307 0.77209 1.04038 1.48423 1.34613 1.10325 1.20729 1.23274 0.92498 0.94183 0.94421 1.20304 1.11671 0.94473 1.03207 1.17177 0.78905 0.86420 0.79877 1.90662 1.66052 1.20186 1.67664 1.45801 1.46373 1.15988 1.26406 1.21130 0.93027 0.92238 0.92223 1.21438 0.91288 0.95473 0.90011 0.94138 1.22868 0.97829 0.95308 0.86326 1.87802 1.33353 1.82704 1.27261 1.23347 0.90129 0.99218 0.91629 1.21405 0.96902 0.92661 0.87154 1.44109 1.01723 1.76007 1.09857 1.19315 0.83210 1.08463 1.26833 0.90720 1.25104 0.97961 0.95173 1.00735 1.69994 1.33281 1.10859 1.40379 0.86376 0.86062 0.77823 0.77665 1.20007 1.21723 1.21501 1.22409 0.93011 0.94892 0.93755 1.20287 1.01915 0.91196 0.99762 1.77034 1.24972 0.96868 1.14146 0.91888 0.91078 0.90671 0.89587 0.88209 0.79791 0.75239 0.92315 0.91497 0.89885 0.93465 0.90276 0.94115 0.95270 0.89076 0.93608 0.90591 0.91563 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.09 37.16 0.37 -1.31 16 2 C 0.13 1.35 7.21 -4.04 -0.03 1.32 16 3 N -0.36 -5.34 3.65 -60.81 -0.22 -5.57 16 4 C 0.11 1.70 10.95 -16.56 -0.18 1.52 16 5 C -0.28 -5.03 6.13 -105.06 -0.64 -5.67 16 6 C 0.59 11.43 7.81 -12.52 -0.10 11.33 16 7 O -0.56 -11.99 14.92 5.28 0.08 -11.91 16 8 N -0.70 -13.06 3.81 -61.38 -0.23 -13.29 16 9 C 0.14 2.53 4.44 -4.04 -0.02 2.51 16 10 C 0.12 2.38 3.20 -67.42 -0.22 2.16 16 11 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 12 C 0.06 0.97 6.29 37.31 0.23 1.20 16 13 O -0.39 -7.49 10.74 -35.23 -0.38 -7.87 16 14 C 0.03 0.65 6.99 37.31 0.26 0.91 16 15 C 0.14 3.18 5.38 -3.53 -0.02 3.17 16 16 N -0.59 -13.20 3.03 -164.29 -0.50 -13.69 16 17 C -0.25 -5.99 7.09 -15.06 -0.11 -6.09 16 18 H 0.08 1.87 5.84 -52.48 -0.31 1.57 16 19 C 0.01 0.24 5.06 -17.43 -0.09 0.15 16 20 N -0.90 -23.30 11.17 55.49 0.62 -22.68 16 21 Si 0.89 20.56 29.57 -169.99 -5.03 15.54 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.13 2.16 7.26 -82.02 -0.60 1.56 16 26 C -0.07 -1.06 9.92 36.01 0.36 -0.70 16 27 N -0.31 -5.07 12.33 33.89 0.42 -4.65 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.89 8.06 -51.93 -0.42 0.47 16 33 H 0.19 2.63 7.46 -52.49 -0.39 2.24 16 34 H 0.41 7.84 6.30 -40.82 -0.26 7.58 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.34 7.52 -51.93 -0.39 0.95 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 2.22 6.36 -51.93 -0.33 1.89 16 43 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.10 1.53 6.55 -51.93 -0.34 1.19 16 LS Contribution 370.57 15.07 5.58 5.58 Total: -1.00 -30.04 370.57 -7.49 -37.53 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -7.07 Total: 8.97 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -0.77 Total: 12.05 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.08 Total: -59.89 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.30 Total: -19.78 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.04 -7.49 -37.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051143598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.522 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds