Wall clock time and date at job start Tue Mar 31 2020 13:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46984 * 2 1 4 4 C 1.34257 * 125.74922 * 125.00263 * 3 2 1 5 5 C 1.38045 * 107.41601 * 179.97438 * 4 3 2 6 6 C 1.47435 * 126.41433 * 179.73741 * 5 4 3 7 7 O 1.21600 * 119.99774 * 180.02562 * 6 5 4 8 8 N 1.34767 * 119.99916 * 0.02698 * 6 5 4 9 9 C 1.46503 * 119.99987 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47186 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.68276 * 59.16137 * 10 9 8 12 12 C 1.53301 * 109.68121 * 179.68040 * 10 9 8 13 13 O 1.42959 * 109.22314 * 172.02406 * 12 10 9 14 14 C 1.42969 * 114.16723 * 297.42135 * 13 12 10 15 15 C 1.53298 * 109.22429 * 62.57886 * 14 13 12 16 16 N 1.47154 * 109.68391 * 298.64393 * 10 9 8 17 17 C 1.36940 * 120.97830 * 9.71219 * 16 10 9 18 18 H 1.08005 * 120.00192 * 328.47032 * 17 16 10 19 19 C 1.38813 * 120.00009 * 148.46998 * 17 16 10 20 20 N 1.31616 * 119.99835 * 349.23134 * 19 17 16 21 21 Si 1.86792 * 120.00175 * 169.22757 * 19 17 16 22 22 H 1.48507 * 109.47050 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47282 * 120.00285 * 21 19 17 24 24 H 1.48503 * 109.47226 * 240.00450 * 21 19 17 25 25 C 1.41287 * 107.17194 * 0.02562 * 5 4 3 26 26 C 1.50699 * 125.99307 * 179.97438 * 25 5 4 27 27 N 1.30452 * 108.02354 * 359.97438 * 25 5 4 28 28 H 1.08999 * 109.47174 * 299.99687 * 1 2 3 29 29 H 1.08997 * 109.47409 * 59.99405 * 1 2 3 30 30 H 1.09000 * 109.47339 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46716 * 240.00559 * 2 1 3 32 32 H 1.08997 * 109.47409 * 120.00595 * 2 1 3 33 33 H 1.07995 * 126.29571 * 359.97438 * 4 3 2 34 34 H 0.97005 * 120.00483 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46803 * 299.99691 * 9 8 6 36 36 H 1.08997 * 109.47491 * 59.99702 * 9 8 6 37 37 H 1.08999 * 109.51391 * 291.94737 * 12 10 9 38 38 H 1.09002 * 109.50900 * 52.04898 * 12 10 9 39 39 H 1.08994 * 109.50968 * 182.50612 * 14 13 12 40 40 H 1.08995 * 109.51115 * 302.65453 * 14 13 12 41 41 H 1.09005 * 109.67859 * 67.41886 * 15 14 13 42 42 H 1.08995 * 109.67929 * 187.97665 * 15 14 13 43 43 H 0.96998 * 120.00432 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47167 * 89.99244 * 26 25 5 45 45 H 1.08995 * 109.47341 * 210.00045 * 26 25 5 46 46 H 1.09001 * 109.46543 * 329.99929 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0714 3.2308 0.5365 6 6 3.9289 4.2046 1.2365 7 8 4.0222 5.3429 0.8191 8 7 4.6093 3.8332 2.3390 9 6 5.4609 4.8011 3.0349 10 6 6.1147 4.1286 4.2437 11 1 6.7096 3.2773 3.9130 12 6 7.0134 5.1352 4.9711 13 8 7.4710 4.5581 6.1964 14 6 6.4275 4.2494 7.1236 15 6 5.4988 3.1975 6.5065 16 7 5.0748 3.6727 5.1798 17 6 3.7517 3.6916 4.8273 18 1 3.3841 4.4482 4.1499 19 6 2.8830 2.7383 5.3406 20 7 3.3580 1.6971 5.9906 21 14 1.0397 2.9333 5.1090 22 1 0.7654 4.1794 4.3491 23 1 0.5093 1.7682 4.3565 24 1 0.3791 3.0073 6.4370 25 6 2.2977 3.4739 -0.6204 26 6 2.2058 4.7804 -1.3659 27 7 1.6769 2.3693 -0.9303 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.3134 1.4023 1.7343 34 1 4.5346 2.9253 2.6722 35 1 6.2349 5.1583 2.3557 36 1 4.8552 5.6428 3.3705 37 1 7.8692 5.3802 4.3421 38 1 6.4467 6.0417 5.1840 39 1 6.8619 3.8571 8.0431 40 1 5.8585 5.1523 7.3452 41 1 6.0317 2.2521 6.4041 42 1 4.6252 3.0600 7.1437 43 1 2.7511 1.0308 6.3489 44 1 2.9772 4.8148 -2.1352 45 1 1.2240 4.8646 -1.8318 46 1 2.3497 5.6067 -0.6698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051143598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:32 Heat of formation + Delta-G solvation = -0.327171 kcal Electronic energy + Delta-G solvation = -28698.336078 eV Core-core repulsion = 24817.812960 eV Total energy + Delta-G solvation = -3880.523119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.42517 -40.52645 -39.60937 -36.89945 -35.74607 -35.23062 -33.40077 -32.45369 -32.06841 -30.94467 -28.99473 -28.70443 -26.90697 -25.21824 -24.60055 -23.47281 -22.91203 -21.39502 -21.17371 -20.50064 -18.93530 -18.15291 -17.54419 -17.28415 -16.94851 -16.66257 -16.28205 -16.21253 -16.00405 -15.46417 -15.39381 -15.12186 -14.97429 -14.88967 -14.61246 -14.23301 -14.00721 -13.85185 -13.48924 -13.21317 -13.08879 -13.03296 -12.90525 -12.85756 -12.74884 -12.45158 -12.37696 -12.14777 -11.96631 -11.83524 -11.79025 -11.27323 -10.87560 -10.58825 -10.52981 -10.35338 -9.92613 -9.51095 -8.58731 -7.85861 -5.35901 0.52706 1.13617 1.34844 1.39916 1.43282 1.51115 2.39147 2.47865 2.59981 3.07163 3.29700 3.34379 3.47908 3.70736 3.93691 4.01772 4.08291 4.15814 4.24555 4.28889 4.32899 4.43687 4.50396 4.53295 4.65238 4.68504 4.71052 4.71752 4.75104 4.78407 4.82415 4.99236 5.02363 5.04925 5.15528 5.15909 5.34403 5.55991 5.63099 5.69184 5.73862 5.88802 6.32733 6.40165 6.53732 6.82940 7.13743 7.45145 7.78419 8.34952 9.18358 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.004856 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.234805 B = 5764.609046 C = 7062.539788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.356 5.356 4 C 0.113 3.887 5 C -0.312 4.312 6 C 0.587 3.413 7 O -0.588 6.588 8 N -0.695 5.695 9 C 0.144 3.856 10 C 0.127 3.873 11 H 0.040 0.960 12 C 0.057 3.943 13 O -0.397 6.397 14 C 0.045 3.955 15 C 0.150 3.850 16 N -0.604 5.604 17 C -0.234 4.234 18 H 0.065 0.935 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 0.934 3.066 22 H -0.288 1.288 23 H -0.286 1.286 24 H -0.295 1.295 25 C 0.114 3.886 26 C -0.069 4.069 27 N -0.317 5.317 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.198 0.802 34 H 0.408 0.592 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.118 0.882 38 H 0.048 0.952 39 H 0.104 0.896 40 H 0.042 0.958 41 H 0.010 0.990 42 H 0.065 0.935 43 H 0.250 0.750 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.653 -2.789 -8.622 9.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.134 5.134 4 C -0.040 4.040 5 C -0.327 4.327 6 C 0.376 3.624 7 O -0.471 6.471 8 N -0.344 5.344 9 C 0.020 3.980 10 C 0.021 3.979 11 H 0.057 0.943 12 C -0.022 4.022 13 O -0.316 6.316 14 C -0.033 4.033 15 C 0.024 3.976 16 N -0.330 5.330 17 C -0.364 4.364 18 H 0.082 0.918 19 C -0.219 4.219 20 N -0.567 5.567 21 Si 0.764 3.236 22 H -0.214 1.214 23 H -0.212 1.212 24 H -0.223 1.223 25 C -0.053 4.053 26 C -0.127 4.127 27 N -0.140 5.140 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.215 0.785 34 H 0.245 0.755 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.136 0.864 38 H 0.067 0.933 39 H 0.122 0.878 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.040 -2.907 -9.610 10.040 hybrid contribution -1.050 -0.187 1.093 1.527 sum -1.090 -3.094 -8.517 9.127 Atomic orbital electron populations 1.22026 0.93346 1.04367 1.02082 1.22245 0.96623 0.75306 1.06225 1.48834 1.33599 1.11338 1.19646 1.23438 0.92238 0.93702 0.94596 1.20329 1.12858 0.95207 1.04259 1.17415 0.78784 0.86416 0.79791 1.90637 1.66950 1.21205 1.68349 1.45790 1.46455 1.15858 1.26323 1.21096 0.93126 0.91433 0.92362 1.21550 0.90656 0.95873 0.89821 0.94253 1.22990 0.98826 0.94375 0.85969 1.87808 1.33309 1.82712 1.27742 1.23222 0.89694 0.98117 0.92231 1.21236 0.96275 0.93080 0.86982 1.44283 1.01911 1.75985 1.10795 1.19253 0.84203 1.07409 1.25575 0.91773 1.25420 0.99735 0.95392 1.01399 1.70077 1.33613 1.11440 1.41600 0.85731 0.83927 0.77098 0.76813 1.21379 1.21227 1.22255 1.22760 0.92913 0.95820 0.93838 1.20283 1.03380 0.89585 0.99474 1.76993 1.25075 0.97104 1.14808 0.94055 0.92119 0.87579 0.87235 0.86223 0.78537 0.75475 0.90177 0.93335 0.86448 0.93344 0.87813 0.93964 0.97236 0.91678 0.94006 0.89305 0.89838 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.09 71.98 0.73 -2.23 16 2 C 0.11 2.15 7.21 86.38 0.62 2.78 16 3 N -0.36 -10.00 3.65 -346.30 -1.26 -11.26 16 4 C 0.11 3.48 10.95 84.28 0.92 4.40 16 5 C -0.31 -11.06 6.13 -20.15 -0.12 -11.18 16 6 C 0.59 22.83 7.81 86.67 0.68 23.51 16 7 O -0.59 -25.14 14.92 -4.03 -0.06 -25.20 16 8 N -0.69 -25.91 3.81 -466.38 -1.77 -27.68 16 9 C 0.14 5.15 4.44 86.38 0.38 5.53 16 10 C 0.13 4.68 3.20 44.97 0.14 4.82 16 11 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 12 C 0.06 1.83 6.29 72.08 0.45 2.29 16 13 O -0.40 -14.19 10.74 -148.98 -1.60 -15.79 16 14 C 0.05 1.63 6.99 72.08 0.50 2.13 16 15 C 0.15 6.57 5.38 86.35 0.46 7.04 16 16 N -0.60 -26.69 3.03 -673.69 -2.04 -28.73 16 17 C -0.23 -11.27 7.09 84.03 0.60 -10.68 16 18 H 0.06 3.24 5.84 -2.91 -0.02 3.22 16 19 C -0.02 -1.12 5.06 84.86 0.43 -0.70 16 20 N -0.92 -47.89 11.17 21.65 0.24 -47.65 16 21 Si 0.93 42.55 29.57 68.60 2.03 44.57 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 25 C 0.11 3.83 7.26 43.51 0.32 4.14 16 26 C -0.07 -1.97 9.92 71.24 0.71 -1.26 16 27 N -0.32 -10.13 12.33 -46.68 -0.58 -10.70 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.12 1.79 8.06 -2.39 -0.02 1.77 16 33 H 0.20 5.42 7.46 -2.91 -0.02 5.40 16 34 H 0.41 15.51 6.30 -92.70 -0.58 14.93 16 35 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.05 1.92 7.52 -2.39 -0.02 1.91 16 37 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.06 3.20 6.36 -2.39 -0.02 3.18 16 43 H 0.25 12.79 8.31 -92.71 -0.77 12.02 16 44 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.08 2.53 6.55 -2.39 -0.02 2.52 16 Total: -1.00 -64.09 370.57 2.18 -61.91 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.41 Total: 29.94 kcal Atomic # 6 Polarization: 23.78 SS G_CDS: 6.82 Total: 30.60 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -5.41 Total: -126.03 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -1.66 Total: -40.99 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -64.09 2.18 -61.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051143598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.584 kcal (2) G-P(sol) polarization free energy of solvation -64.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds